Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8322589.1

Orthogroup ID

OG0002032

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 577

Gene Structure 577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8322589.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 305 bp

tctgcaggatgtattgggcaaaaaagatccttgagtggacaagaggacccgaagaagcccttgaaatatccatatatttaaataacaagtatgaaatggatggaagggatcccaatggatatgttggttgcatgtggtcaatatgtggtgttcacgaccagggttggaaggaacgaccaatttttgggaaaatacgttacatgaactatgcaggctgcaaaaggaaatttgacgttgatggatacgttgcctatgtgcagaggcttggtgcaaccaagaagagaaaactcctactcagtgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000719 GO:0003674 GO:0003824 GO:0003904 GO:0003913 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0016829 GO:0016830 GO:0033554 GO:0034641 GO:0036094 GO:0043167 GO:0043168 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0048037 GO:0050660 GO:0050662 GO:0050896 GO:0051716 GO:0071704 GO:0071949 GO:0090304 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_photolyase

Protein Analysis

100

Amino Acids

11.81

Weight (kDa)

9.21

Isoelectric Point (pI)

28.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12370 AT1G12370 AT1G12370
fragaria_vesca	FvH4_5g00790 FvH4_5g00790 FvH4_5g00790 FvH4_5g00790 FvH4_5g00790 FvH4_5g00790 FvH4_5g00790
malus_domestica	MD04G1078900.v1.1
prunus_persica	Prupe.5G080300_v2.0.a1 Prupe.5G080300_v2.0.a1 Prupe.5G080300_v2.0.a1 Prupe.5G080300_v2.0.a1
pyrus_communis	pycom04g07070
rosa_chinensis	RchiOBHm_Chr7g0201341 RchiOBHm_Chr7g0201371 RchiOBHm_Chr7g0201391
rosa_laevigata	RLG00000003679
rosa_multiflora	Rmu_co8093880.1_g000001 Rmu_co8322589.1_g000001 Rmu_sc0001469.1_g000010 Rmu_sc0001469.1_g000012 Rmu_sc0013971.1_g000001 Rmu_sc0013971.1_g000004 Rmu_sc0024878.1_g000001 Rmu_sc0024878.1_g000004 Rmu_sc0026181.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226330 Rroxscaffold_3G00255330 Rroxscaffold_3G00255340 Rroxscaffold_3G00255350
rosa_rugosa	Rorug07G0062600 Rorug07G0062700
rosa_samantha	Rh7AG190200 Rh7BG192600 Rh7CG200900 Rh7CG201300 Rh7CG201400 Rh7CG201500 Rh7DG195000 Rh7DG195200
rosa_wichuraiana	Rw7G016680 Rw7G016690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	184
AclWI	GGATC	3 cut(s)	21, 103, 116
AcsI	RAATTY	1 cut(s)	226
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	158
AlwI	GGATC	3 cut(s)	21, 103, 116
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	46
BamHI	GGATCC	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	2 cut(s)	94, 232
BciT130I	CCWGG	1 cut(s)	160
BciVI	GTATCC	1 cut(s)	235
BfmI	CTRYAG	1 cut(s)	3
BfuI	GTATCC	1 cut(s)	235
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme1390I	CCNGG	1 cut(s)	160
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	2 cut(s)	48, 110
BmrFI	CCNGG	1 cut(s)	160
BpuEI	CTTGAG	1 cut(s)	52
BsaJI	CCNNGG	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	2 cut(s)	14, 105
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	202
BsgI	GTGCAG	1 cut(s)	277
BslI	CCNNNNNNNGG	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	26, 108
BspLI	GGNNCC	2 cut(s)	48, 110
BspMAI	CTGCAG	1 cut(s)	7
BspPI	GGATC	3 cut(s)	21, 103, 116
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	2 cut(s)	26, 108
Bst2UI	CCWGG	1 cut(s)	160
Bst6I	CTCTTC	1 cut(s)	274
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	295
BstF5I	GGATG	2 cut(s)	14, 105
BstKTI	GATC	2 cut(s)	29, 111
BstMBI	GATC	2 cut(s)	26, 108
BstNI	CCWGG	1 cut(s)	160
BstNSI	RCATGY	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	158
BstSFI	CTRYAG	1 cut(s)	3
BstV1I	GCAGC	1 cut(s)	202
BstX2I	RGATCY	2 cut(s)	26, 108
BstYI	RGATCY	2 cut(s)	26, 108
BsuI	GTATCC	1 cut(s)	235
BtsCI	GGATG	2 cut(s)	14, 105
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	213
Cfr13I	GGNCC	1 cut(s)	46
CviAII	CATG	2 cut(s)	132, 201
CviJI	RGCY	3 cut(s)	58, 215, 264
CviKI_1	RGCY	3 cut(s)	58, 215, 264
DdeI	CTNAG	1 cut(s)	295
DpnI	GATC	2 cut(s)	28, 110
DpnII	GATC	2 cut(s)	26, 108
DraI	TTTAAA	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	274
EarI	CTCTTC	1 cut(s)	274
Eco47I	GGWCC	1 cut(s)	46
EcoO109I	RGGNCCY	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	158
FaeI	CATG	2 cut(s)	135, 204
FaiI	YATR	9 cut(s)	73, 75, 92, 122, 133, 144, 202, 209, 254
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FatI	CATG	2 cut(s)	131, 200
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	2 cut(s)	21, 112
Fsp4HI	GCNGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	216
Hin1II	CATG	2 cut(s)	135, 204
Hpy166II	GTNNAC	2 cut(s)	38, 153
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	2 cut(s)	38, 153
HpyAV	CCTTC	2 cut(s)	98, 162
HpyCH4IV	ACGT	3 cut(s)	195, 233, 245
HpyCH4V	TGCA	6 cut(s)	5, 131, 211, 218, 258, 271
HpyF3I	CTNAG	1 cut(s)	295
HpySE526I	ACGT	3 cut(s)	195, 233, 245
Hsp92II	CATG	2 cut(s)	135, 204
Kzo9I	GATC	2 cut(s)	26, 108
LpnPI	CCDG	3 cut(s)	145, 172, 197
Lsp1109I	GCAGC	1 cut(s)	202
MaeII	ACGT	3 cut(s)	195, 233, 245
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	2 cut(s)	28, 110
MboI	GATC	2 cut(s)	26, 108
MboII	GAAGA	2 cut(s)	64, 291
MflI	RGATCY	2 cut(s)	26, 108
MluCI	AATT	2 cut(s)	179, 226
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	2 cut(s)	37, 254
MseI	TTAA	1 cut(s)	79
MspR9I	CCNGG	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	160
NdeII	GATC	2 cut(s)	26, 108
NlaIII	CATG	2 cut(s)	135, 204
NlaIV	GGNNCC	2 cut(s)	48, 110
NspI	RCATGY	1 cut(s)	135
PflMI	CCANNNNNTGG	1 cut(s)	184
PkrI	GCNGC	1 cut(s)	217
PpuMI	RGGWCCY	1 cut(s)	46
Psp5II	RGGWCCY	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	2 cut(s)	48, 110
PspPI	GGNCC	1 cut(s)	46
PspPPI	RGGWCCY	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	7
PsuI	RGATCY	2 cut(s)	26, 108
SaqAI	TTAA	1 cut(s)	79
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	2 cut(s)	26, 108
Sau96I	GGNCC	1 cut(s)	46
ScrFI	CCNGG	1 cut(s)	160
SetI	ASST	3 cut(s)	198, 236, 248
SfcI	CTRYAG	1 cut(s)	3
SinI	GGWCC	1 cut(s)	46
SmiI	ATTTAAAT	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
Sse9I	AATT	2 cut(s)	179, 226
StyD4I	CCNGG	1 cut(s)	158
SwaI	ATTTAAAT	1 cut(s)	80
TaiI	ACGT	3 cut(s)	198, 236, 248
TasI	AATT	2 cut(s)	179, 226
Tru1I	TTAA	1 cut(s)	79
Tru9I	TTAA	1 cut(s)	79
TscAI	CASTG	1 cut(s)	303
TseI	GCWGC	1 cut(s)	215
TspDTI	ATGAA	2 cut(s)	107, 217
TspRI	CASTG	1 cut(s)	303
Van91I	CCANNNNNTGG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	1 cut(s)	226
XceI	RCATGY	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.