Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8093880.1

Orthogroup ID

OG0002032

Physical Location & Seq

Genomic Coordinates Reverse (-)

32 .. 586

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8093880.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgtatgaagacattgctctagttggagagctaagaaacttagaagttcttagccttgtaaaatccaaggttaaacaattacccaaagaaattgggcagttaacccgtctgcggttggtggatttgtctgattgctatggacttgaagtgattccagctggtgtcatttcgaattggacaagacttgaagacttgagaatgagaaacagctttaagaattgggagagtcaacggtggccaagtaatgctagccttttggagctgatgaacttgcccaagctaaccgcattagaagtagtcattccagataccgacattcttccagcaaagtttttctctgacaggttggaaaaataccaaataattattaagccgaagcggtggctgcttcgtatgtatgaaacaaccgtcaacaagcttatactagggcccaataccagatatgaattggaccaaggtctaaaagcattgctgaagagatgtggagatttacactttattggggcgaaagatgttgatttttcatttatcatgaagacagaggtacgtttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

184

Amino Acids

21.41

Weight (kDa)

9.04

Isoelectric Point (pI)

30.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12370 AT1G12370 AT1G12370
fragaria_vesca	FvH4_5g00790 FvH4_5g00790 FvH4_5g00790 FvH4_5g00790 FvH4_5g00790 FvH4_5g00790 FvH4_5g00790
malus_domestica	MD04G1078900.v1.1
prunus_persica	Prupe.5G080300_v2.0.a1 Prupe.5G080300_v2.0.a1 Prupe.5G080300_v2.0.a1 Prupe.5G080300_v2.0.a1
pyrus_communis	pycom04g07070
rosa_chinensis	RchiOBHm_Chr7g0201341 RchiOBHm_Chr7g0201371 RchiOBHm_Chr7g0201391
rosa_laevigata	RLG00000003679
rosa_multiflora	Rmu_co8093880.1_g000001 Rmu_co8322589.1_g000001 Rmu_sc0001469.1_g000010 Rmu_sc0001469.1_g000012 Rmu_sc0013971.1_g000001 Rmu_sc0013971.1_g000004 Rmu_sc0024878.1_g000001 Rmu_sc0024878.1_g000004 Rmu_sc0026181.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226330 Rroxscaffold_3G00255330 Rroxscaffold_3G00255340 Rroxscaffold_3G00255350
rosa_rugosa	Rorug07G0062600 Rorug07G0062700
rosa_samantha	Rh7AG190200 Rh7BG192600 Rh7CG200900 Rh7CG201300 Rh7CG201400 Rh7CG201500 Rh7DG195000 Rh7DG195200
rosa_wichuraiana	Rw7G016680 Rw7G016690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	112, 285, 379
AcoI	YGGCCR	1 cut(s)	236
AcuI	CTGAAG	1 cut(s)	494
AfaI	GTAC	1 cut(s)	546
AfiI	CCNNNNNNNGG	1 cut(s)	111
AgsI	TTSAA	2 cut(s)	146, 188
AluBI	AGCT	6 cut(s)	31, 158, 210, 262, 280, 418
AluI	AGCT	6 cut(s)	31, 158, 210, 262, 280, 418
AoxI	GGCC	2 cut(s)	236, 428
ApaI	GGGCCC	1 cut(s)	432
ApeKI	GCWGC	1 cut(s)	385
Asp700I	GAANNNNTTC	1 cut(s)	150
AspS9I	GGNCC	3 cut(s)	428, 429, 451
AsuII	TTCGAA	1 cut(s)	170
AsuNHI	GCTAGC	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	451
BaeGI	GKGCMC	1 cut(s)	432
BalI	TGGCCA	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	432
BbsI	GAAGAC	3 cut(s)	15, 195, 542
BbvI	GCAGC	1 cut(s)	372
BfaI	CTAG	3 cut(s)	20, 249, 425
BisI	GCNGC	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	387
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	3 cut(s)	428, 429, 451
BmiI	GGNNCC	1 cut(s)	430
BmtI	GCTAGC	1 cut(s)	252
BoxI	GACNNNNGTC	1 cut(s)	456
BpiI	GAAGAC	3 cut(s)	15, 195, 542
Bpu14I	TTCGAA	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	214
BsaJI	CCNNGG	2 cut(s)	66, 454
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse3DI	GCAATG	2 cut(s)	12, 467
BseDI	CCNNGG	2 cut(s)	66, 454
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMI	GCAATG	2 cut(s)	12, 467
BseSI	GKGCMC	1 cut(s)	432
BseXI	GCAGC	1 cut(s)	372
BshFI	GGCC	2 cut(s)	238, 430
BslI	CCNNNNNNNGG	1 cut(s)	111
BsnI	GGCC	2 cut(s)	238, 430
Bsp119I	TTCGAA	1 cut(s)	170
Bsp120I	GGGCCC	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	432
BspACI	CCGC	3 cut(s)	112, 285, 379
BspANI	GGCC	2 cut(s)	238, 430
BspHI	TCATGA	1 cut(s)	531
BspLI	GGNNCC	1 cut(s)	430
BspOI	GCTAGC	1 cut(s)	252
BspT104I	TTCGAA	1 cut(s)	170
BsrDI	GCAATG	2 cut(s)	12, 467
BssECI	CCNNGG	2 cut(s)	66, 454
BssT1I	CCWWGG	2 cut(s)	66, 454
Bst4CI	ACNGT	2 cut(s)	234, 409
Bst6I	CTCTTC	1 cut(s)	470
BstBI	TTCGAA	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	250
BstDEI	CTNAG	3 cut(s)	32, 40, 50
BstMWI	GCNNNNNNNGC	1 cut(s)	385
BstPAI	GACNNNNGTC	1 cut(s)	456
BstSLI	GKGCMC	1 cut(s)	432
BstV1I	GCAGC	1 cut(s)	372
BstV2I	GAAGAC	3 cut(s)	15, 195, 542
BsuRI	GGCC	2 cut(s)	238, 430
Cac8I	GCNNGC	1 cut(s)	250
CciI	TCATGA	1 cut(s)	531
Cfr13I	GGNCC	3 cut(s)	428, 429, 451
Csp6I	GTAC	1 cut(s)	545
CviAII	CATG	1 cut(s)	532
CviQI	GTAC	1 cut(s)	545
DdeI	CTNAG	3 cut(s)	32, 40, 50
EaeI	YGGCCR	1 cut(s)	236
Eam1104I	CTCTTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	470
Eco130I	CCWWGG	2 cut(s)	66, 454
Eco24I	GRGCYC	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	494
EcoO109I	RGGNCCY	1 cut(s)	428
EcoT14I	CCWWGG	2 cut(s)	66, 454
EcoT38I	GRGCYC	1 cut(s)	432
ErhI	CCWWGG	2 cut(s)	66, 454
FaeI	CATG	1 cut(s)	535
FaiI	YATR	7 cut(s)	6, 138, 395, 399, 422, 444, 533
FatI	CATG	1 cut(s)	531
Fnu4HI	GCNGC	1 cut(s)	386
FriOI	GRGCYC	1 cut(s)	432
Fsp4HI	GCNGC	1 cut(s)	386
FspBI	CTAG	3 cut(s)	20, 249, 425
GluI	GCNGC	1 cut(s)	386
HaeIII	GGCC	2 cut(s)	238, 430
Hin1II	CATG	1 cut(s)	535
HincII	GTYRAC	3 cut(s)	102, 230, 412
HindII	GTYRAC	3 cut(s)	102, 230, 412
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	2 cut(s)	151, 226
HpaI	GTTAAC	1 cut(s)	102
Hpy166II	GTNNAC	3 cut(s)	102, 230, 412
Hpy188I	TCNGA	2 cut(s)	130, 340
Hpy188III	TCNNGA	2 cut(s)	305, 532
Hpy8I	GTNNAC	3 cut(s)	102, 230, 412
HpyCH4III	ACNGT	2 cut(s)	234, 409
HpyCH4IV	ACGT	1 cut(s)	547
HpyF10VI	GCNNNNNNNGC	1 cut(s)	385
HpyF3I	CTNAG	3 cut(s)	32, 40, 50
HpySE526I	ACGT	1 cut(s)	547
Hsp92II	CATG	1 cut(s)	535
KspAI	GTTAAC	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	6 cut(s)	144, 168, 318, 328, 336, 451
Lsp1109I	GCAGC	1 cut(s)	372
MaeI	CTAG	3 cut(s)	20, 249, 425
MaeII	ACGT	1 cut(s)	547
MboII	GAAGA	5 cut(s)	20, 200, 311, 487, 547
MhlI	GDGCHC	1 cut(s)	432
MlsI	TGGCCA	1 cut(s)	238
MluCI	AATT	6 cut(s)	77, 90, 172, 217, 363, 446
MluNI	TGGCCA	1 cut(s)	238
MlyI	GAGTC	1 cut(s)	235
MmeI	TCCRAC	2 cut(s)	4, 327
MnlI	CCTC	1 cut(s)	535
Mox20I	TGGCCA	1 cut(s)	238
MroXI	GAANNNNTTC	1 cut(s)	150
MscI	TGGCCA	1 cut(s)	238
MseI	TTAA	4 cut(s)	72, 101, 213, 369
Msp20I	TGGCCA	1 cut(s)	238
MspA1I	CMGCKG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	385
NheI	GCTAGC	1 cut(s)	248
NlaIII	CATG	1 cut(s)	535
NlaIV	GGNNCC	1 cut(s)	430
NspV	TTCGAA	1 cut(s)	170
PagI	TCATGA	1 cut(s)	531
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	387
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
PshAI	GACNNNNGTC	1 cut(s)	456
PspN4I	GGNNCC	1 cut(s)	430
PspOMI	GGGCCC	1 cut(s)	428
PspPI	GGNCC	3 cut(s)	428, 429, 451
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	1 cut(s)	546
RsaNI	GTAC	1 cut(s)	545
SaqAI	TTAA	4 cut(s)	72, 101, 213, 369
SatI	GCNGC	1 cut(s)	386
Sau96I	GGNCC	3 cut(s)	428, 429, 451
SchI	GAGTC	1 cut(s)	235
SduI	GDGCHC	1 cut(s)	432
SfuI	TTCGAA	1 cut(s)	170
SinI	GGWCC	1 cut(s)	451
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
Sse9I	AATT	6 cut(s)	77, 90, 172, 217, 363, 446
SsiI	CCGC	3 cut(s)	112, 285, 379
SspMI	CTAG	3 cut(s)	20, 249, 425
StyI	CCWWGG	2 cut(s)	66, 454
TaaI	ACNGT	2 cut(s)	234, 409
TaiI	ACGT	1 cut(s)	550
TaqI	TCGA	1 cut(s)	170
TasI	AATT	6 cut(s)	77, 90, 172, 217, 363, 446
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	4 cut(s)	72, 101, 213, 369
Tru9I	TTAA	4 cut(s)	72, 101, 213, 369
TseI	GCWGC	1 cut(s)	385
TspDTI	ATGAA	6 cut(s)	21, 281, 414, 459, 513, 548
VpaK11BI	GGWCC	1 cut(s)	451
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XmnI	GAANNNNTTC	1 cut(s)	150
XspI	CTAG	3 cut(s)	20, 249, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.