Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002032

Physical Location & Seq

Genomic Coordinates Reverse (-)

4756608 .. 4756980

Gene Structure 373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0062700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGTGGTTGGGCGTTCTACGACATGGGCCTACGTCCGAATCATCTCCGGCACCATTCTCGGTGGCGTTCTCGGCTTCTACGTCATGGACCGCCTCGAGAAAAGTTACAAGGAGAAGATGAACGAGAGACTGAGGAAGTATGAAAGTGATTTGAAGATGAAAGAGGAGAAGCTTAATGAATTTGCAGAAGAGTCTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000719 GO:0003674 GO:0003824 GO:0003904 GO:0003913 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006290 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0016829 GO:0016830 GO:0033554 GO:0034641 GO:0036094 GO:0043167 GO:0043168 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0048037 GO:0050660 GO:0050662 GO:0050896 GO:0051716 GO:0071704 GO:0071949 GO:0090304 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_photolyase

Protein Analysis

66

Amino Acids

7.77

Weight (kDa)

7.96

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12370 AT1G12370 AT1G12370
fragaria_vesca	FvH4_5g00790 FvH4_5g00790 FvH4_5g00790 FvH4_5g00790 FvH4_5g00790 FvH4_5g00790 FvH4_5g00790
malus_domestica	MD04G1078900.v1.1
prunus_persica	Prupe.5G080300_v2.0.a1 Prupe.5G080300_v2.0.a1 Prupe.5G080300_v2.0.a1 Prupe.5G080300_v2.0.a1
pyrus_communis	pycom04g07070
rosa_chinensis	RchiOBHm_Chr7g0201341 RchiOBHm_Chr7g0201371 RchiOBHm_Chr7g0201391
rosa_laevigata	RLG00000003679
rosa_multiflora	Rmu_co8093880.1_g000001 Rmu_co8322589.1_g000001 Rmu_sc0001469.1_g000010 Rmu_sc0001469.1_g000012 Rmu_sc0013971.1_g000001 Rmu_sc0013971.1_g000004 Rmu_sc0024878.1_g000001 Rmu_sc0024878.1_g000004 Rmu_sc0026181.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226330 Rroxscaffold_3G00255330 Rroxscaffold_3G00255340 Rroxscaffold_3G00255350
rosa_rugosa	Rorug07G0062600 Rorug07G0062700
rosa_samantha	Rh7AG190200 Rh7BG192600 Rh7CG200900 Rh7CG201300 Rh7CG201400 Rh7CG201500 Rh7DG195000 Rh7DG195200
rosa_wichuraiana	Rw7G016680 Rw7G016690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	50
AciI	CCGC	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	154
AluBI	AGCT	1 cut(s)	172
AluI	AGCT	1 cut(s)	172
Alw26I	GTCTC	1 cut(s)	121
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	1 cut(s)	27
ApoI	RAATTY	1 cut(s)	179
AspS9I	GGNCC	2 cut(s)	27, 88
AvaI	CYCGRG	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	88
BanI	GGYRCC	1 cut(s)	50
BcgI	CGANNNNNNTGC	2 cut(s)	40, 74
BcoDI	GTCTC	1 cut(s)	121
BfmI	CTRYAG	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	88
BmeT110I	CYCGRG	1 cut(s)	95
BmgT120I	GGNCC	2 cut(s)	27, 88
BmiI	GGNNCC	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	122
BseRI	GAGGAG	1 cut(s)	179
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	50
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	121
BsnI	GGCC	1 cut(s)	29
BsoBI	CYCGRG	1 cut(s)	95
BspACI	CCGC	1 cut(s)	91
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	52
BspT107I	GGYRCC	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	131
BstMAI	GTCTC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	1 cut(s)	72
BstSFI	CTRYAG	1 cut(s)	197
BsuRI	GGCC	1 cut(s)	29
Cfr13I	GGNCC	2 cut(s)	27, 88
CviAII	CATG	2 cut(s)	24, 85
CviJI	RGCY	3 cut(s)	29, 75, 172
CviKI_1	RGCY	3 cut(s)	29, 75, 172
DdeI	CTNAG	1 cut(s)	131
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	88
Eco88I	CYCGRG	1 cut(s)	95
FaeI	CATG	2 cut(s)	27, 88
FaiI	YATR	3 cut(s)	25, 86, 141
FatI	CATG	2 cut(s)	23, 84
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	1 cut(s)	48
Hin1II	CATG	2 cut(s)	27, 88
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	2 cut(s)	39, 191
HpaII	CCGG	1 cut(s)	48
Hpy188I	TCNGA	1 cut(s)	38
Hpy188III	TCNNGA	1 cut(s)	97
HpyCH4IV	ACGT	2 cut(s)	33, 81
HpyCH4V	TGCA	1 cut(s)	185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	72
HpyF3I	CTNAG	1 cut(s)	131
HpySE526I	ACGT	2 cut(s)	33, 81
Hsp92II	CATG	2 cut(s)	27, 88
LpnPI	CCDG	1 cut(s)	61
MaeII	ACGT	2 cut(s)	33, 81
MaeIII	GTNAC	1 cut(s)	104
MboII	GAAGA	3 cut(s)	127, 166, 200
MluCI	AATT	1 cut(s)	179
MlyI	GAGTC	1 cut(s)	200
MnlI	CCTC	3 cut(s)	104, 126, 157
MseI	TTAA	1 cut(s)	174
MspI	CCGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	72
NlaIII	CATG	2 cut(s)	27, 88
NlaIV	GGNNCC	1 cut(s)	52
NmeAIII	GCCGAG	1 cut(s)	51
PaeR7I	CTCGAG	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	39
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
PspN4I	GGNNCC	1 cut(s)	52
PspPI	GGNCC	2 cut(s)	27, 88
SaqAI	TTAA	1 cut(s)	174
Sau96I	GGNCC	2 cut(s)	27, 88
SchI	GAGTC	1 cut(s)	200
SetI	ASST	3 cut(s)	36, 84, 174
SfcI	CTRYAG	1 cut(s)	197
Sfr274I	CTCGAG	1 cut(s)	95
SgeI	CNNG	9 cut(s)	36, 60, 71, 83, 97, 107, 109, 121, 136
SinI	GGWCC	1 cut(s)	88
SlaI	CTCGAG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	179
SsiI	CCGC	1 cut(s)	91
TaiI	ACGT	2 cut(s)	36, 84
TaqI	TCGA	1 cut(s)	96
TasI	AATT	1 cut(s)	179
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TspDTI	ATGAA	4 cut(s)	134, 156, 173, 192
VpaK11BI	GGWCC	1 cut(s)	88
XapI	RAATTY	1 cut(s)	179
XhoI	CTCGAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.