Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004309

Physical Location & Seq

Genomic Coordinates Forward (+)

4348498 .. 4350993

Gene Structure 2496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G12760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGTCAACGGAGACTACCACGGGAAATTCCTCGTTAATTCCAGCATCATCATCATCGTCATCCTCCGACGCAATCGATCCAGCTCCGTTGCTTTTTAACGGCGACGATAATGAAGGAAACAACGGAGGAGGAGGTGGGGAACGGAGATCTGTCAGGAGACAAGGGTTGAGAGAAGCTGCGAGGTTTCTTAGTCGTGCTAGTAGCGGACGCGTGATGCGTGAGCCATCTATGCTTGTGAGAGAAGCCGCGGCGGAGCAGCTCGAGGAGAGGCAGAGCGATTGGGCTTATTCGAAGCCTGTGGTGGTGCTTGATATCGTTTGGAATCTGGCTTTTGTTTCTGTTGCTACGGCTATTTTGGTGATGAGCAGGAAAGAACATCCGATTATGCCGCTTAGAGTTTGGCTTTTGGGGTATGCTTTGCAATGCGTGTTGCATATGGTTTGTGTCTGTGTTGAGTATCGGAGGAGGAACAGGAGGAGAACCAATAGGACGACGACGACGACTCCTCCACGGTCACGTTCTTCTTCTTCCTCTTCATCTTCTTCTTCCTTGGAGGAAGAAGCTTTGGGTTCCAGGAGGAATTCAGGTGTGCAGGACTTGTCGCTTGGCCACTTGGATACCGAAAGCAGCAGTGTTGCTAAGCATCTGGAATCTGCCAATACGATGTTTTCTTTTATATGGTGGATCATTGGATTCTACTGGGTATCTGCTGGTGGCCAAGAGTTGGCACAAGAATCCCCTCGGATTTACTGGCTGTCTATTGTCTTTCTTGGTTTCGATGTGTTCTTTGTTGTCTTCTGTGTTGCGTTGGCCTGCGTTATTGGAATTGCGGTTTGCTGTTGCCTGCCATGCATCATTGCAGTTTTGTACGCTGTTGCTGATCAGGAAGGGGCTTCAAAAGAAGACATTGAGCAGCTCACCAAATTCAAGTTTCGCAAACTAGGTGATGCCAACAAACACACTAATGATGAAGCCCAAGGAACTACCGAGGGAATAATGACTGAGTGTGGTACAGATTCACCCATTGAACATACTCTTTTGCAAGAAGATGCAGAATGTTGCATCTGTCTCTCTGCATATGAAGACGGAACAGAGCTAAGGGAACTACCTTGTGGACACCATTTCCACTGTTCATGCGTAGACAAATGGCTATACATCAACGCGACTTGCCCACTCTGCAAATACAACATCCTCAAGAGTAGCAACTTGGATCGAGAGGAAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031090 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

408

Amino Acids

45.09

Weight (kDa)

5.41

Isoelectric Point (pI)

65.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	281 - 323	2e-14	Ring finger domain
zf-RING_11	PF17123	281 - 309	8.7e-09	RING-like zinc finger
zf-rbx1	PF12678	281 - 323	6.3e-07	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	281 - 322	8e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	282 - 322	9.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12760 AT1G12760 AT1G63170
fragaria_vesca	FvH4_5g01740 FvH4_5g01740 FvH4_5g01740 FvH4_5g01740
malus_domestica	MD00G1110500.v1.1 MD04G1044500.v1.1 MD04G1064900.v1.1 MD10G1187400.v1.1 MD11G1252000.v1.1 MD13G1133300.v1.1
prunus_persica	Prupe.5G092900_v2.0.a1 Prupe.5G092900_v2.0.a1 Prupe.5G092900_v2.0.a1
pyrus_communis	pycom04g05870 pycom06g07380
rosa_chinensis	RchiOBHm_Chr7g0198981
rosa_laevigata	RLG00000003827
rosa_multiflora	Rmu_co8298497.1_g000001 Rmu_sc0006266.1_g000024 Rmu_sc0007328.1_g000010
rosa_roxburghii	Rroxscaffold_3G00257250
rosa_rugosa	Rorug07G0051800 Rorug07G0051900 Rorug07G0051900
rosa_samantha	Rh7AG174900 Rh7BG178100 Rh7CG184100 Rh7DG177500
rosa_wichuraiana	Rw7G015340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	724
AccI	GTMKAC	1 cut(s)	1140
AccII	CGCG	3 cut(s)	210, 248, 1163
AciI	CCGC	6 cut(s)	204, 246, 248, 251, 389, 830
AclWI	GGATC	3 cut(s)	71, 692, 1218
AcoI	YGGCCR	2 cut(s)	607, 715
AcsI	RAATTY	3 cut(s)	25, 580, 923
AfaI	GTAC	2 cut(s)	869, 1012
AfiI	CCNNNNNNNGG	1 cut(s)	724
AflIII	ACRYGT	1 cut(s)	208
AgsI	TTSAA	3 cut(s)	897, 928, 1028
AjnI	CCWGG	1 cut(s)	572
AluBI	AGCT	6 cut(s)	83, 176, 259, 563, 916, 1096
AluI	AGCT	6 cut(s)	83, 176, 259, 563, 916, 1096
Alw26I	GTCTC	3 cut(s)	5, 151, 1073
AlwI	GGATC	3 cut(s)	71, 692, 1218
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	3 cut(s)	607, 715, 810
ApeKI	GCWGC	4 cut(s)	176, 256, 627, 913
ApoI	RAATTY	3 cut(s)	25, 580, 923
AsuHPI	GGTGA	4 cut(s)	370, 910, 956, 1011
AsuII	TTCGAA	1 cut(s)	290
AvaI	CYCGRG	1 cut(s)	260
BalI	TGGCCA	2 cut(s)	609, 717
BbsI	GAAGAC	3 cut(s)	787, 909, 1089
BbvI	GCAGC	4 cut(s)	163, 268, 639, 925
BccI	CCATC	1 cut(s)	232
BceAI	ACGGC	2 cut(s)	115, 363
BciT130I	CCWGG	1 cut(s)	574
BciVI	GTATCC	1 cut(s)	610
BclI	TGATCA	1 cut(s)	880
BcoDI	GTCTC	3 cut(s)	5, 151, 1073
BfaI	CTAG	3 cut(s)	198, 941, 1225
BfuI	GTATCC	1 cut(s)	610
BglII	AGATCT	1 cut(s)	146
BisI	GCNGC	7 cut(s)	177, 246, 249, 257, 389, 628, 914
BlpI	GCTNAGC	1 cut(s)	639
BlsI	GCNGC	7 cut(s)	178, 247, 250, 258, 390, 629, 915
Bme1390I	CCNGG	1 cut(s)	574
BmeT110I	CYCGRG	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	571
BmrFI	CCNGG	1 cut(s)	574
BmrI	ACTGGG	1 cut(s)	709
BmsI	GCATC	7 cut(s)	53, 204, 652, 861, 937, 1039, 1071
BmuI	ACTGGG	1 cut(s)	709
BpiI	GAAGAC	3 cut(s)	787, 909, 1089
Bpu10I	CCTNAGC	1 cut(s)	1097
Bpu1102I	GCTNAGC	1 cut(s)	639
Bpu14I	TTCGAA	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	1178
Bsa29I	ATCGAT	1 cut(s)	75
BsaJI	CCNNGG	7 cut(s)	18, 246, 509, 549, 740, 976, 987
BsaXI	ACNNNNNCTCC	4 cut(s)	487, 490, 517, 520
Bsc4I	CCNNNNNNNGG	1 cut(s)	724
Bse1I	ACTGG	2 cut(s)	704, 755
Bse3DI	GCAATG	2 cut(s)	428, 855
BseBI	CCWGG	1 cut(s)	574
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	7 cut(s)	18, 246, 509, 549, 740, 976, 987
BseGI	GGATG	3 cut(s)	59, 376, 1188
BseLI	CCNNNNNNNGG	1 cut(s)	724
BseMI	GCAATG	2 cut(s)	428, 855
BseMII	CTCAG	1 cut(s)	993
BseNI	ACTGG	2 cut(s)	704, 755
BseRI	GAGGAG	6 cut(s)	141, 144, 278, 478, 490, 495
BseXI	GCAGC	4 cut(s)	163, 268, 639, 925
BsgI	GTGCAG	1 cut(s)	611
Bsh1236I	CGCG	3 cut(s)	210, 248, 1163
BshFI	GGCC	3 cut(s)	609, 717, 812
BshVI	ATCGAT	1 cut(s)	75
BsiHKCI	CYCGRG	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	724
BsmAI	GTCTC	3 cut(s)	5, 151, 1073
BsnI	GGCC	3 cut(s)	609, 717, 812
BsoBI	CYCGRG	1 cut(s)	260
Bsp119I	TTCGAA	1 cut(s)	290
Bsp143I	GATC	5 cut(s)	76, 146, 684, 880, 1210
Bsp1720I	GCTNAGC	1 cut(s)	639
BspACI	CCGC	6 cut(s)	204, 246, 248, 251, 389, 830
BspANI	GGCC	3 cut(s)	609, 717, 812
BspCNI	CTCAG	1 cut(s)	994
BspDI	ATCGAT	1 cut(s)	75
BspFNI	CGCG	3 cut(s)	210, 248, 1163
BspLI	GGNNCC	1 cut(s)	571
BspPI	GGATC	3 cut(s)	71, 692, 1218
BspT104I	TTCGAA	1 cut(s)	290
BsrDI	GCAATG	2 cut(s)	428, 855
BsrI	ACTGG	2 cut(s)	704, 755
BssECI	CCNNGG	7 cut(s)	18, 246, 509, 549, 740, 976, 987
BssMI	GATC	5 cut(s)	76, 146, 684, 880, 1210
BssT1I	CCWWGG	2 cut(s)	549, 976
Bst2UI	CCWGG	1 cut(s)	574
Bst4CI	ACNGT	2 cut(s)	513, 1130
Bst6I	CTCTTC	1 cut(s)	538
BstBI	TTCGAA	1 cut(s)	290
BstC8I	GCNNGC	2 cut(s)	814, 845
BstDEI	CTNAG	5 cut(s)	188, 392, 639, 1002, 1097
BstDSI	CCRYGG	3 cut(s)	18, 246, 509
BstF5I	GGATG	3 cut(s)	59, 376, 1188
BstFNI	CGCG	3 cut(s)	210, 248, 1163
BstKTI	GATC	5 cut(s)	79, 149, 687, 883, 1213
BstMAI	GTCTC	3 cut(s)	5, 151, 1073
BstMBI	GATC	5 cut(s)	76, 146, 684, 880, 1210
BstMWI	GCNNNNNNNGC	3 cut(s)	229, 849, 1176
BstNI	CCWGG	1 cut(s)	574
BstSCI	CCNGG	1 cut(s)	572
BstUI	CGCG	3 cut(s)	210, 248, 1163
BstV1I	GCAGC	4 cut(s)	163, 268, 639, 925
BstV2I	GAAGAC	3 cut(s)	787, 909, 1089
BstX2I	RGATCY	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	146
Bsu15I	ATCGAT	1 cut(s)	75
BsuI	GTATCC	1 cut(s)	610
BsuRI	GGCC	3 cut(s)	609, 717, 812
BsuTUI	ATCGAT	1 cut(s)	75
BtgI	CCRYGG	3 cut(s)	18, 246, 509
BtsCI	GGATG	3 cut(s)	59, 376, 1188
BtsI	GCAGTG	1 cut(s)	637
BtsIMutI	CAGTG	2 cut(s)	637, 1126
Cac8I	GCNNGC	2 cut(s)	814, 845
Cfr42I	CCGCGG	1 cut(s)	249
ClaI	ATCGAT	1 cut(s)	75
CseI	GACGC	2 cut(s)	77, 216
Csp6I	GTAC	2 cut(s)	868, 1011
CviAII	CATG	2 cut(s)	849, 1134
CviQI	GTAC	2 cut(s)	868, 1011
DdeI	CTNAG	5 cut(s)	188, 392, 639, 1002, 1097
DpnI	GATC	5 cut(s)	78, 148, 686, 882, 1212
DpnII	GATC	5 cut(s)	76, 146, 684, 880, 1210
EaeI	YGGCCR	2 cut(s)	607, 715
Eam1104I	CTCTTC	1 cut(s)	538
EarI	CTCTTC	1 cut(s)	538
EciI	GGCGGA	1 cut(s)	266
Eco130I	CCWWGG	2 cut(s)	549, 976
Eco32I	GATATC	1 cut(s)	313
Eco88I	CYCGRG	1 cut(s)	260
EcoRI	GAATTC	1 cut(s)	580
EcoRII	CCWGG	1 cut(s)	572
EcoRV	GATATC	1 cut(s)	313
EcoT14I	CCWWGG	2 cut(s)	549, 976
EcoT22I	ATGCAT	1 cut(s)	854
ErhI	CCWWGG	2 cut(s)	549, 976
FaeI	CATG	2 cut(s)	852, 1137
FatI	CATG	2 cut(s)	848, 1133
FauNDI	CATATG	2 cut(s)	435, 1078
FbaI	TGATCA	1 cut(s)	880
FblI	GTMKAC	1 cut(s)	1140
Fnu4HI	GCNGC	7 cut(s)	177, 246, 249, 257, 389, 628, 914
FokI	GGATG	3 cut(s)	46, 363, 1175
Fsp4HI	GCNGC	7 cut(s)	177, 246, 249, 257, 389, 628, 914
FspBI	CTAG	3 cut(s)	198, 941, 1225
GluI	GCNGC	7 cut(s)	177, 246, 249, 257, 389, 628, 914
HaeIII	GGCC	3 cut(s)	609, 717, 812
HgaI	GACGC	2 cut(s)	77, 216
Hin1II	CATG	2 cut(s)	852, 1137
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	561
HinfI	GANTC	6 cut(s)	322, 502, 650, 693, 734, 1016
HphI	GGTGA	4 cut(s)	370, 910, 956, 1011
Hpy166II	GTNNAC	3 cut(s)	6, 1115, 1141
Hpy188I	TCNGA	4 cut(s)	67, 381, 462, 744
Hpy188III	TCNNGA	5 cut(s)	154, 647, 884, 1195, 1214
Hpy8I	GTNNAC	3 cut(s)	6, 1115, 1141
Hpy99I	CGWCG	5 cut(s)	71, 107, 496, 499, 502
HpyAV	CCTTC	2 cut(s)	107, 881
HpyCH4III	ACNGT	2 cut(s)	513, 1130
HpyCH4IV	ACGT	1 cut(s)	517
HpyF10VI	GCNNNNNNNGC	3 cut(s)	229, 849, 1176
HpyF3I	CTNAG	5 cut(s)	188, 392, 639, 1002, 1097
HpySE526I	ACGT	1 cut(s)	517
Hsp92II	CATG	2 cut(s)	852, 1137
Ksp22I	TGATCA	1 cut(s)	880
KspI	CCGCGG	1 cut(s)	249
Kzo9I	GATC	5 cut(s)	76, 146, 684, 880, 1210
LmnI	GCTCC	2 cut(s)	88, 253
Lsp1109I	GCAGC	4 cut(s)	163, 268, 639, 925
LweI	GCATC	7 cut(s)	53, 204, 652, 861, 937, 1039, 1071
MaeI	CTAG	3 cut(s)	198, 941, 1225
MaeII	ACGT	1 cut(s)	517
MaeIII	GTNAC	1 cut(s)	513
MalI	GATC	5 cut(s)	78, 148, 686, 882, 1212
MboI	GATC	5 cut(s)	76, 146, 684, 880, 1210
MflI	RGATCY	1 cut(s)	146
MlsI	TGGCCA	2 cut(s)	609, 717
MluCI	AATT	5 cut(s)	25, 36, 580, 825, 923
MluI	ACGCGT	1 cut(s)	208
MluNI	TGGCCA	2 cut(s)	609, 717
MlyI	GAGTC	1 cut(s)	496
MmeI	TCCRAC	1 cut(s)	90
Mox20I	TGGCCA	2 cut(s)	609, 717
Mph1103I	ATGCAT	1 cut(s)	854
MscI	TGGCCA	2 cut(s)	609, 717
MseI	TTAA	2 cut(s)	35, 96
MslI	CAYNNNNRTG	1 cut(s)	963
Msp20I	TGGCCA	2 cut(s)	609, 717
MspA1I	CMGCKG	1 cut(s)	248
MspR9I	CCNGG	1 cut(s)	574
MvaI	CCWGG	1 cut(s)	574
MvnI	CGCG	3 cut(s)	210, 248, 1163
MwoI	GCNNNNNNNGC	3 cut(s)	229, 849, 1176
NdeI	CATATG	2 cut(s)	435, 1078
NdeII	GATC	5 cut(s)	76, 146, 684, 880, 1210
NlaIII	CATG	2 cut(s)	852, 1137
NlaIV	GGNNCC	1 cut(s)	571
NmuCI	GTSAC	1 cut(s)	513
NsiI	ATGCAT	1 cut(s)	854
NspV	TTCGAA	1 cut(s)	290
PaeR7I	CTCGAG	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	2 cut(s)	214, 497
PfeI	GAWTC	5 cut(s)	322, 650, 693, 734, 1016
PflMI	CCANNNNNTGG	1 cut(s)	724
PfoI	TCCNGGA	1 cut(s)	572
PkrI	GCNGC	7 cut(s)	178, 247, 250, 258, 390, 629, 915
PleI	GAGTC	1 cut(s)	496
PpsI	GAGTC	1 cut(s)	496
Psp6I	CCWGG	1 cut(s)	572
PspGI	CCWGG	1 cut(s)	572
PspN4I	GGNNCC	1 cut(s)	571
PspXI	VCTCGAGB	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	146
RsaI	GTAC	2 cut(s)	869, 1012
RsaNI	GTAC	2 cut(s)	868, 1011
RseI	CAYNNNNRTG	1 cut(s)	963
SacII	CCGCGG	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	35, 96
SatI	GCNGC	7 cut(s)	177, 246, 249, 257, 389, 628, 914
Sau3AI	GATC	5 cut(s)	76, 146, 684, 880, 1210
SchI	GAGTC	1 cut(s)	496
ScrFI	CCNGG	1 cut(s)	574
SfaNI	GCATC	7 cut(s)	53, 204, 652, 861, 937, 1039, 1071
Sfr274I	CTCGAG	1 cut(s)	260
Sfr303I	CCGCGG	1 cut(s)	249
SfuI	TTCGAA	1 cut(s)	290
SgrBI	CCGCGG	1 cut(s)	249
SlaI	CTCGAG	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	963
SmlI	CTYRAG	2 cut(s)	260, 1193
SmoI	CTYRAG	2 cut(s)	260, 1193
Sse9I	AATT	5 cut(s)	25, 36, 580, 825, 923
SsiI	CCGC	6 cut(s)	204, 246, 248, 251, 389, 830
SspMI	CTAG	3 cut(s)	198, 941, 1225
StyD4I	CCNGG	1 cut(s)	572
StyI	CCWWGG	2 cut(s)	549, 976
TaaI	ACNGT	2 cut(s)	513, 1130
TaiI	ACGT	1 cut(s)	520
TaqI	TCGA	5 cut(s)	75, 261, 290, 777, 1213
TasI	AATT	5 cut(s)	25, 36, 580, 825, 923
TauI	GCSGC	3 cut(s)	248, 251, 391
TfiI	GAWTC	5 cut(s)	322, 650, 693, 734, 1016
Tru1I	TTAA	2 cut(s)	35, 96
Tru9I	TTAA	2 cut(s)	35, 96
TscAI	CASTG	2 cut(s)	637, 1133
TseFI	GTSAC	1 cut(s)	513
TseI	GCWGC	4 cut(s)	176, 256, 627, 913
Tsp45I	GTSAC	1 cut(s)	513
TspDTI	ATGAA	5 cut(s)	126, 525, 984, 1095, 1122
TspGWI	ACGGA	5 cut(s)	23, 75, 138, 157, 1101
TspRI	CASTG	2 cut(s)	637, 1133
Van91I	CCANNNNNTGG	1 cut(s)	724
XapI	RAATTY	3 cut(s)	25, 580, 923
XhoI	CTCGAG	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	1140
XspI	CTAG	3 cut(s)	198, 941, 1225
Zsp2I	ATGCAT	1 cut(s)	854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.