Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007328.1

Orthogroup ID

OG0004309

Physical Location & Seq

Genomic Coordinates Forward (+)

36228 .. 36815

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007328.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atgggttttctacctctgccctcattattttcgtatgacatgttattaaagcaggatggcgcatctaaggaagatattgaacaattatcaaaattcaaattccgacgagttagtagtgagaaagttgcaggcgatgcacaaggacctcatggaggagtaatgactgaatgcggaacagattcacccattgagcatgttctttcaccagaagatgcggagtgttgcatctgcctctcttcttatgatgatggtgtggagctgaggcaacttccttgtggtcaccattttcactgttcctgcatcgataagtggcttttcattaatgctacttgtcctctctgcaagtacaatattttgaagagtagcagcaatgatcaaggcgaagtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031090 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

129

Amino Acids

14.25

Weight (kDa)

4.93

Isoelectric Point (pI)

70.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12760 AT1G12760 AT1G63170
fragaria_vesca	FvH4_5g01740 FvH4_5g01740 FvH4_5g01740 FvH4_5g01740
malus_domestica	MD00G1110500.v1.1 MD04G1044500.v1.1 MD04G1064900.v1.1 MD10G1187400.v1.1 MD11G1252000.v1.1 MD13G1133300.v1.1
prunus_persica	Prupe.5G092900_v2.0.a1 Prupe.5G092900_v2.0.a1 Prupe.5G092900_v2.0.a1
pyrus_communis	pycom04g05870 pycom06g07380
rosa_chinensis	RchiOBHm_Chr7g0198981
rosa_laevigata	RLG00000003827
rosa_multiflora	Rmu_co8298497.1_g000001 Rmu_sc0006266.1_g000024 Rmu_sc0007328.1_g000010
rosa_roxburghii	Rroxscaffold_3G00257250
rosa_rugosa	Rorug07G0051800 Rorug07G0051900 Rorug07G0051900
rosa_samantha	Rh7AG174900 Rh7BG178100 Rh7CG184100 Rh7DG177500
rosa_wichuraiana	Rw7G015340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	171, 215
AcsI	RAATTY	2 cut(s)	92, 98
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	152
AflIII	ACRYGT	1 cut(s)	39
AgsI	TTSAA	3 cut(s)	80, 97, 358
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
ApeKI	GCWGC	1 cut(s)	366
ApoI	RAATTY	2 cut(s)	92, 98
AseI	ATTAAT	1 cut(s)	321
Asp700I	GAANNNNTTC	1 cut(s)	178
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	143
AsuHPI	GGTGA	3 cut(s)	174, 195, 272
AvaII	GGWCC	1 cut(s)	143
BbvCI	CCTCAGC	1 cut(s)	260
BbvI	GCAGC	1 cut(s)	378
BccI	CCATC	2 cut(s)	50, 242
BclI	TGATCA	1 cut(s)	373
BisI	GCNGC	1 cut(s)	367
BlsI	GCNGC	1 cut(s)	368
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	143
BmsI	GCATC	5 cut(s)	71, 124, 202, 234, 309
Bpu10I	CCTNAGC	1 cut(s)	260
Bsa29I	ATCGAT	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse3DI	GCAATG	1 cut(s)	376
BseCI	ATCGAT	1 cut(s)	303
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseMI	GCAATG	1 cut(s)	376
BseMII	CTCAG	1 cut(s)	251
BseRI	GAGGAG	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	378
BshVI	ATCGAT	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	173
Bsp143I	GATC	1 cut(s)	373
BspACI	CCGC	2 cut(s)	171, 215
BspCNI	CTCAG	1 cut(s)	252
BspDI	ATCGAT	1 cut(s)	303
BsrDI	GCAATG	1 cut(s)	376
BssMI	GATC	1 cut(s)	373
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	2 cut(s)	241, 353
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	2 cut(s)	66, 260
BstEII	GGTNACC	1 cut(s)	278
BstENI	CCTNNNNNAGG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	1 cut(s)	376
BstMBI	GATC	1 cut(s)	373
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNSI	RCATGY	2 cut(s)	43, 197
BstPI	GGTNACC	1 cut(s)	278
BstV1I	GCAGC	1 cut(s)	378
Bsu15I	ATCGAT	1 cut(s)	303
BsuTUI	ATCGAT	1 cut(s)	303
BtgZI	GCGATG	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	130
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	143
ClaI	ATCGAT	1 cut(s)	303
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	3 cut(s)	40, 149, 194
CviJI	RGCY	2 cut(s)	259, 313
CviKI_1	RGCY	2 cut(s)	259, 313
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	2 cut(s)	66, 260
DpnI	GATC	1 cut(s)	375
DpnII	GATC	1 cut(s)	373
Eam1104I	CTCTTC	2 cut(s)	241, 353
EarI	CTCTTC	2 cut(s)	241, 353
Eco47I	GGWCC	1 cut(s)	143
Eco91I	GGTNACC	1 cut(s)	278
EcoNI	CCTNNNNNAGG	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	143
EcoO65I	GGTNACC	1 cut(s)	278
FaeI	CATG	3 cut(s)	43, 152, 197
FaiI	YATR	5 cut(s)	36, 41, 150, 195, 243
FatI	CATG	3 cut(s)	39, 148, 193
FbaI	TGATCA	1 cut(s)	373
Fnu4HI	GCNGC	1 cut(s)	367
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	1 cut(s)	367
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	1 cut(s)	367
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	3 cut(s)	43, 152, 197
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HinfI	GANTC	1 cut(s)	179
HphI	GGTGA	3 cut(s)	174, 195, 272
Hpy188I	TCNGA	1 cut(s)	104
Hpy99I	CGWCG	1 cut(s)	108
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4V	TGCA	5 cut(s)	128, 137, 225, 300, 342
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	2 cut(s)	66, 260
Hsp92II	CATG	3 cut(s)	43, 152, 197
HspAI	GCGC	1 cut(s)	60
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	1 cut(s)	373
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	4 cut(s)	38, 114, 219, 310
Lsp1109I	GCAGC	1 cut(s)	378
LweI	GCATC	5 cut(s)	71, 124, 202, 234, 309
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	1 cut(s)	375
MboI	GATC	1 cut(s)	373
MboII	GAAGA	4 cut(s)	83, 221, 228, 370
MluCI	AATT	3 cut(s)	83, 92, 98
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	7 cut(s)	24, 31, 146, 156, 242, 255, 345
MroXI	GAANNNNTTC	1 cut(s)	178
MseI	TTAA	2 cut(s)	47, 321
Mva1269I	GAATGC	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	1 cut(s)	373
NlaIII	CATG	3 cut(s)	43, 152, 197
NmuCI	GTSAC	1 cut(s)	278
NspI	RCATGY	2 cut(s)	43, 197
PciI	ACATGT	1 cut(s)	39
PctI	GAATGC	1 cut(s)	173
PdmI	GAANNNNTTC	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	368
PpuMI	RGGWCCY	1 cut(s)	143
PscI	ACATGT	1 cut(s)	39
PshBI	ATTAAT	1 cut(s)	321
Psp5II	RGGWCCY	1 cut(s)	143
PspEI	GGTNACC	1 cut(s)	278
PspPI	GGNCC	1 cut(s)	143
PspPPI	RGGWCCY	1 cut(s)	143
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SaqAI	TTAA	2 cut(s)	47, 321
SatI	GCNGC	1 cut(s)	367
Sau3AI	GATC	1 cut(s)	373
Sau96I	GGNCC	1 cut(s)	143
SetI	ASST	3 cut(s)	16, 148, 261
SfaNI	GCATC	5 cut(s)	71, 124, 202, 234, 309
SinI	GGWCC	1 cut(s)	143
Sse9I	AATT	3 cut(s)	83, 92, 98
SsiI	CCGC	2 cut(s)	171, 215
SspI	AATATT	1 cut(s)	352
TaaI	ACNGT	1 cut(s)	293
TaqI	TCGA	1 cut(s)	303
TasI	AATT	3 cut(s)	83, 92, 98
TatI	WGTACW	1 cut(s)	345
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	2 cut(s)	47, 321
Tru9I	TTAA	2 cut(s)	47, 321
TscAI	CASTG	1 cut(s)	296
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	1 cut(s)	366
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	1 cut(s)	307
TspRI	CASTG	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	143
VspI	ATTAAT	1 cut(s)	321
XagI	CCTNNNNNAGG	1 cut(s)	150
XapI	RAATTY	2 cut(s)	92, 98
XceI	RCATGY	2 cut(s)	43, 197
XmnI	GAANNNNTTC	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.