pycom06g07380

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
11970755 .. 11973647
2893 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g07380.2

Sequence Viewer

Length: 1158 bp
ATGGCCTCGCCGAACCGATCCTCGGAGGACATCGTCGACACGACGCCGTTGATTAGCAACTCGGGCGGGTCGTCCGACGAGTCGAACTCGGGGCGCCAGCAATTTGCGCGCCGACAGAGCCTGCGGCAGGCCGCGAGGTTTCTGCGCCAGGCCAGCAGCCGCCGCCTCATGCGCGAGCCGTCGATGCTGGTCCGGGAGACCGCGGCGGAGCAATTGGAGGAGAGGCAGAGCGATTGGGCGTACTCCAAGCCGGTGGTGGTTCTCGACATCATCTGGAACTTCGCCTTCGTTGTCGTGGCGGCGACTGTCCTGGTTCTTAGCCGGTACGAACTGCCGGATATGCCCCTGAGGCTGTGGATCGTGGGGTACGCGTTGCAGTGCGTGGTGCATATGGTTTGTGTTTGCGTCGAGTTTCGGAGGCGGCAGTGCCGGCAGAGAAGCCGGTTTTCGGGGGTGATTTCTGGGGAGGAAGGGGTGGGGAGTGTTGGGAATTTGAGTTCTGGGTTGAGAGAGGGGGGTTCGTCATCTCAGTACGTGTCGTTGGCTGATCATATGACTGAGGAGGGTACCAGCAGTGTTGCTAAGCACCTGGAATCTGCAAATACAATGTTTTCGTTTATCTGGTGGATCATTGGGTTTTATTGGGTATCGGCAGGTGGTCAATCTTTAGCGCGTGCCTCCCCTCAGCTTTACTGGTTATGTATAATTTTCCTGGGTTTTGATGTGTTTTTTGTCGTTTTCTGTGTTGCACTGGCATGTATCATTGGTATCGCAGTTTGTTGCTGTCTTCCGTGCATTATTGCACTTTTATATGCTGTCGCAGATCAGGATGGAGCATCTAAGGAAGACATCGAACAGCTTTCAAAATTCAAATTCAGAAAAGTTGCCAATGAGAAAGTTGCCGGCGATGTACTAGGTGGAGGAGTAATGACTGAATGTGGAACAGATTCACCGATTGATCATGTTCTTTCTCAGGAGGATGCGGAGTGCTGCATCTGCCTTTCTTCTTATGACGATGGAGTGGAACTAAGGCAACTTCCTTGTAGCCACCATTTTCACTGTTCCTGCATTGACAAGTGGCTTTTTATCAACGCTACCTGTCCTCTCTGCAAGTACAATATCTTGAAGAGTAGCAGCCACGATCAAGGGGAAGTGTAG

Protein Analysis

386

Amino Acids

42.62

Weight (kDa)

5.56

Isoelectric Point (pI)

58.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 644
Acc36I ACCTGC 1 cut(s) 644
Acc65I GGTACC 1 cut(s) 566
AccB1I GGYRCC 2 cut(s) 93, 566
AccI GTMKAC 1 cut(s) 36
AccII CGCG 6 cut(s) 109, 134, 174, 203, 371, 673
AclWI GGATC 3 cut(s) 12, 365, 635
AcsI RAATTY 3 cut(s) 490, 866, 872
AcyI GRCGYC 2 cut(s) 44, 94
AfaI GTAC 7 cut(s) 242, 326, 368, 533, 568, 912, 1115
AfiI CCNNNNNNNGG 3 cut(s) 22, 127, 448
AflIII ACRYGT 2 cut(s) 369, 534
AgsI TTSAA 3 cut(s) 864, 871, 1126
AjnI CCWGG 4 cut(s) 147, 309, 588, 711
AloI GAACNNNNNNTCC 2 cut(s) 481, 513
AluBI AGCT 2 cut(s) 688, 859
AluI AGCT 2 cut(s) 688, 859
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 3 cut(s) 12, 365, 635
AlwNI CAGNNNCTG 1 cut(s) 121
Ama87I CYCGRG 2 cut(s) 61, 88
AoxI GGCC 3 cut(s) 3, 129, 150
ApeKI GCWGC 3 cut(s) 156, 990, 1134
ApoI RAATTY 3 cut(s) 490, 866, 872
Asp700I GAANNNNTTC 1 cut(s) 946
Asp718I GGTACC 1 cut(s) 566
AspLEI GCGC 6 cut(s) 96, 109, 111, 147, 174, 673
AspS9I GGNCC 1 cut(s) 190
AsuC2I CCSGG 1 cut(s) 194
AsuHPI GGTGA 2 cut(s) 466, 942
AvaI CYCGRG 2 cut(s) 61, 88
AvaII GGWCC 1 cut(s) 190
AxyI CCTNAGG 1 cut(s) 347
BanI GGYRCC 2 cut(s) 93, 566
BbsI GAAGAC 2 cut(s) 779, 852
BbvCI CCTCAGC 1 cut(s) 684
BbvI GCAGC 3 cut(s) 168, 977, 1146
BccI CCATC 2 cut(s) 824, 1010
BceAI ACGGC 2 cut(s) 31, 163
BcgI CGANNNNNNTGC 2 cut(s) 124, 158
BciT130I CCWGG 4 cut(s) 149, 311, 590, 713
BclI TGATCA 2 cut(s) 547, 958
BcnI CCSGG 1 cut(s) 194
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 1 cut(s) 914
BfoI RGCGCY 1 cut(s) 97
BfuAI ACCTGC 1 cut(s) 644
BglI GCCNNNNNGGC 1 cut(s) 349
BlpI GCTNAGC 1 cut(s) 582
Bme1390I CCNGG 5 cut(s) 149, 194, 311, 590, 713
Bme18I GGWCC 1 cut(s) 190
BmeT110I CYCGRG 2 cut(s) 61, 88
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 2 cut(s) 95, 568
BmrFI CCNGG 5 cut(s) 149, 194, 311, 590, 713
BmsI GCATC 4 cut(s) 174, 845, 970, 1002
BpiI GAAGAC 2 cut(s) 779, 852
BplI GAGNNNNNCTC 2 cut(s) 71, 103
Bpu10I CCTNAGC 1 cut(s) 684
Bpu1102I GCTNAGC 1 cut(s) 582
BpuMI CCSGG 1 cut(s) 194
BsaAI YACGTR 1 cut(s) 535
BsaHI GRCGYC 2 cut(s) 44, 94
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 3 cut(s) 21, 201, 712
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 127, 448
Bse118I RCCGGY 5 cut(s) 250, 321, 429, 441, 902
Bse1I ACTGG 2 cut(s) 698, 756
Bse21I CCTNAGG 1 cut(s) 347
BseBI CCWGG 4 cut(s) 149, 311, 590, 713
BseDI CCNNGG 3 cut(s) 21, 201, 712
BseGI GGATG 2 cut(s) 835, 985
BseLI CCNNNNNNNGG 3 cut(s) 22, 127, 448
BseMII CTCAG 5 cut(s) 338, 542, 549, 698, 986
BseNI ACTGG 2 cut(s) 698, 756
BsePI GCGCGC 1 cut(s) 107
BseRI GAGGAG 3 cut(s) 233, 575, 936
BseXI GCAGC 3 cut(s) 168, 977, 1146
Bsh1236I CGCG 6 cut(s) 109, 134, 174, 203, 371, 673
BshFI GGCC 3 cut(s) 5, 131, 152
BshNI GGYRCC 2 cut(s) 93, 566
BsiHKCI CYCGRG 2 cut(s) 61, 88
BsiSI CCGG 7 cut(s) 193, 251, 322, 335, 430, 442, 903
BslI CCNNNNNNNGG 3 cut(s) 22, 127, 448
BsmAI GTCTC 1 cut(s) 191
BsnI GGCC 3 cut(s) 5, 131, 152
Bso31I GGTCTC 1 cut(s) 191
BsoBI CYCGRG 2 cut(s) 61, 88
Bsp143I GATC 7 cut(s) 17, 357, 547, 627, 823, 958, 1141
Bsp1720I GCTNAGC 1 cut(s) 582
BspANI GGCC 3 cut(s) 5, 131, 152
BspCNI CTCAG 5 cut(s) 339, 541, 550, 697, 985
BspFNI CGCG 6 cut(s) 109, 134, 174, 203, 371, 673
BspLI GGNNCC 2 cut(s) 95, 568
BspMI ACCTGC 1 cut(s) 644
BspPI GGATC 3 cut(s) 12, 365, 635
BspT107I GGYRCC 2 cut(s) 93, 566
BspTNI GGTCTC 1 cut(s) 191
BsrFI RCCGGY 5 cut(s) 250, 321, 429, 441, 902
BsrI ACTGG 2 cut(s) 698, 756
BssAI RCCGGY 5 cut(s) 250, 321, 429, 441, 902
BssECI CCNNGG 3 cut(s) 21, 201, 712
BssHII GCGCGC 1 cut(s) 107
BssMI GATC 7 cut(s) 17, 357, 547, 627, 823, 958, 1141
BssNI GRCGYC 2 cut(s) 44, 94
Bst2UI CCWGG 4 cut(s) 149, 311, 590, 713
Bst4CI ACNGT 2 cut(s) 307, 1061
Bst6I CTCTTC 1 cut(s) 1121
BstACI GRCGYC 2 cut(s) 44, 94
BstBAI YACGTR 1 cut(s) 535
BstC8I GCNNGC 9 cut(s) 98, 109, 122, 129, 154, 176, 431, 675, 904
BstDEI CTNAG 9 cut(s) 317, 347, 528, 558, 582, 684, 840, 972, 1028
BstDSI CCRYGG 1 cut(s) 201
BstENI CCTNNNNNAGG 1 cut(s) 125
BstF5I GGATG 2 cut(s) 835, 985
BstFNI CGCG 6 cut(s) 109, 134, 174, 203, 371, 673
BstH2I RGCGCY 1 cut(s) 97
BstHHI GCGC 6 cut(s) 96, 109, 111, 147, 174, 673
BstKTI GATC 7 cut(s) 20, 360, 550, 630, 826, 961, 1144
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 7 cut(s) 17, 357, 547, 627, 823, 958, 1141
BstNI CCWGG 4 cut(s) 149, 311, 590, 713
BstNSI RCATGY 1 cut(s) 759
BstSCI CCNGG 5 cut(s) 147, 192, 309, 588, 711
BstUI CGCG 6 cut(s) 109, 134, 174, 203, 371, 673
BstV1I GCAGC 3 cut(s) 168, 977, 1146
BstV2I GAAGAC 2 cut(s) 779, 852
BstXI CCANNNNNNTGG 1 cut(s) 253
Bsu36I CCTNAGG 1 cut(s) 347
BsuRI GGCC 3 cut(s) 5, 131, 152
BtgI CCRYGG 1 cut(s) 201
BtgZI GCGATG 1 cut(s) 921
BtsCI GGATG 2 cut(s) 835, 985
BtsI GCAGTG 3 cut(s) 383, 431, 580
BtsIMutI CAGTG 5 cut(s) 383, 431, 580, 749, 1057
BveI ACCTGC 1 cut(s) 644
Cac8I GCNNGC 9 cut(s) 98, 109, 122, 129, 154, 176, 431, 675, 904
CaiI CAGNNNCTG 1 cut(s) 121
CfoI GCGC 6 cut(s) 96, 109, 111, 147, 174, 673
Cfr10I RCCGGY 5 cut(s) 250, 321, 429, 441, 902
Cfr13I GGNCC 1 cut(s) 190
Cfr42I CCGCGG 1 cut(s) 204
CseI GACGC 2 cut(s) 52, 394
Csp6I GTAC 7 cut(s) 241, 325, 367, 532, 567, 911, 1114
CviAII CATG 3 cut(s) 169, 756, 962
CviQI GTAC 7 cut(s) 241, 325, 367, 532, 567, 911, 1114
DdeI CTNAG 9 cut(s) 317, 347, 528, 558, 582, 684, 840, 972, 1028
DinI GGCGCC 1 cut(s) 95
DpnI GATC 7 cut(s) 19, 359, 549, 629, 825, 960, 1143
DpnII GATC 7 cut(s) 17, 357, 547, 627, 823, 958, 1141
Eam1104I CTCTTC 1 cut(s) 1121
EarI CTCTTC 1 cut(s) 1121
EciI GGCGGA 1 cut(s) 221
Eco31I GGTCTC 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 190
Eco81I CCTNAGG 1 cut(s) 347
Eco88I CYCGRG 2 cut(s) 61, 88
EcoNI CCTNNNNNAGG 1 cut(s) 125
EcoRII CCWGG 4 cut(s) 147, 309, 588, 711
EgeI GGCGCC 1 cut(s) 95
EheI GGCGCC 1 cut(s) 95
FaeI CATG 3 cut(s) 172, 759, 965
FatI CATG 3 cut(s) 168, 755, 961
FauI CCCGC 1 cut(s) 59
FauNDI CATATG 2 cut(s) 390, 552
FbaI TGATCA 2 cut(s) 547, 958
FblI GTMKAC 1 cut(s) 36
FokI GGATG 2 cut(s) 842, 992
FspBI CTAG 1 cut(s) 914
GlaI GCGC 6 cut(s) 95, 108, 110, 146, 173, 672
HaeII RGCGCY 1 cut(s) 97
HaeIII GGCC 3 cut(s) 5, 131, 152
HapII CCGG 7 cut(s) 193, 251, 322, 335, 430, 442, 903
HgaI GACGC 2 cut(s) 52, 394
HhaI GCGC 6 cut(s) 96, 109, 111, 147, 174, 673
Hin1I GRCGYC 2 cut(s) 44, 94
Hin1II CATG 3 cut(s) 172, 759, 965
Hin6I GCGC 6 cut(s) 94, 107, 109, 145, 172, 671
HinP1I GCGC 6 cut(s) 94, 107, 109, 145, 172, 671
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 3 cut(s) 80, 593, 947
HpaII CCGG 7 cut(s) 193, 251, 322, 335, 430, 442, 903
HphI GGTGA 2 cut(s) 466, 942
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 4 cut(s) 25, 76, 417, 878
Hpy188III TCNNGA 5 cut(s) 263, 274, 827, 974, 1123
Hpy8I GTNNAC 1 cut(s) 37
Hpy99I CGWCG 5 cut(s) 38, 46, 80, 184, 410
HpyAV CCTTC 2 cut(s) 295, 464
HpyCH4III ACNGT 2 cut(s) 307, 1061
HpyCH4IV ACGT 1 cut(s) 534
HpyCH4V TGCA 9 cut(s) 376, 388, 599, 749, 795, 803, 993, 1068, 1110
HpyF3I CTNAG 9 cut(s) 317, 347, 528, 558, 582, 684, 840, 972, 1028
HpySE526I ACGT 1 cut(s) 534
Hsp92I GRCGYC 2 cut(s) 44, 94
Hsp92II CATG 3 cut(s) 172, 759, 965
HspAI GCGC 6 cut(s) 94, 107, 109, 145, 172, 671
KasI GGCGCC 1 cut(s) 93
KpnI GGTACC 1 cut(s) 570
KroI GCCGGC 2 cut(s) 429, 902
KroNI GCCGGC 2 cut(s) 431, 904
Ksp22I TGATCA 2 cut(s) 547, 958
KspI CCGCGG 1 cut(s) 204
Kzo9I GATC 7 cut(s) 17, 357, 547, 627, 823, 958, 1141
LmnI GCTCC 2 cut(s) 208, 833
Lsp1109I GCAGC 3 cut(s) 168, 977, 1146
LweI GCATC 4 cut(s) 174, 845, 970, 1002
MaeI CTAG 1 cut(s) 914
MaeII ACGT 1 cut(s) 534
MalI GATC 7 cut(s) 19, 359, 549, 629, 825, 960, 1143
MboI GATC 7 cut(s) 17, 357, 547, 627, 823, 958, 1141
MboII GAAGA 4 cut(s) 779, 857, 996, 1138
MfeI CAATTG 1 cut(s) 212
MluCI AATT 6 cut(s) 101, 212, 490, 705, 866, 872
MluI ACGCGT 1 cut(s) 369
Mly113I GGCGCC 1 cut(s) 94
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 99
MroNI GCCGGC 2 cut(s) 429, 902
MroXI GAANNNNTTC 1 cut(s) 946
MslI CAYNNNNRTG 1 cut(s) 754
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 7 cut(s) 193, 251, 322, 335, 430, 442, 903
MspR9I CCNGG 5 cut(s) 149, 194, 311, 590, 713
MunI CAATTG 1 cut(s) 212
MvaI CCWGG 4 cut(s) 149, 311, 590, 713
MvnI CGCG 6 cut(s) 109, 134, 174, 203, 371, 673
NaeI GCCGGC 2 cut(s) 431, 904
NarI GGCGCC 1 cut(s) 94
NciI CCSGG 1 cut(s) 194
NdeI CATATG 2 cut(s) 390, 552
NdeII GATC 7 cut(s) 17, 357, 547, 627, 823, 958, 1141
NgoMIV GCCGGC 2 cut(s) 429, 902
NlaIII CATG 3 cut(s) 172, 759, 965
NlaIV GGNNCC 2 cut(s) 95, 568
NspI RCATGY 1 cut(s) 759
PaqCI CACCTGC 1 cut(s) 644
PauI GCGCGC 1 cut(s) 107
PcsI WCGNNNNNNNCGW 1 cut(s) 68
PdiI GCCGGC 2 cut(s) 431, 904
PdmI GAANNNNTTC 1 cut(s) 946
PfeI GAWTC 2 cut(s) 593, 947
PflFI GACNNNGTC 1 cut(s) 32
PfoI TCCNGGA 1 cut(s) 192
PleI GAGTC 1 cut(s) 88
PluTI GGCGCC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 88
Ppu21I YACGTR 1 cut(s) 535
Psp6I CCWGG 4 cut(s) 147, 309, 588, 711
PspGI CCWGG 4 cut(s) 147, 309, 588, 711
PspN4I GGNNCC 2 cut(s) 95, 568
PspPI GGNCC 1 cut(s) 190
PstNI CAGNNNCTG 1 cut(s) 121
PsyI GACNNNGTC 1 cut(s) 32
PteI GCGCGC 1 cut(s) 107
RsaI GTAC 7 cut(s) 242, 326, 368, 533, 568, 912, 1115
RsaNI GTAC 7 cut(s) 241, 325, 367, 532, 567, 911, 1114
RseI CAYNNNNRTG 1 cut(s) 754
SacII CCGCGG 1 cut(s) 204
SalI GTCGAC 1 cut(s) 35
Sau3AI GATC 7 cut(s) 17, 357, 547, 627, 823, 958, 1141
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 5 cut(s) 149, 194, 311, 590, 713
SetI ASST 8 cut(s) 140, 537, 591, 658, 690, 861, 919, 1100
SfaNI GCATC 4 cut(s) 174, 845, 970, 1002
SfoI GGCGCC 1 cut(s) 95
Sfr303I CCGCGG 1 cut(s) 204
SgrBI CCGCGG 1 cut(s) 204
SinI GGWCC 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 754
Sse9I AATT 6 cut(s) 101, 212, 490, 705, 866, 872
SspDI GGCGCC 1 cut(s) 93
SspMI CTAG 1 cut(s) 914
StyD4I CCNGG 5 cut(s) 147, 192, 309, 588, 711
TaaI ACNGT 2 cut(s) 307, 1061
TaiI ACGT 1 cut(s) 537
TaqI TCGA 6 cut(s) 36, 83, 182, 264, 408, 852
TasI AATT 6 cut(s) 101, 212, 490, 705, 866, 872
TatI WGTACW 2 cut(s) 910, 1113
TauI GCSGC 7 cut(s) 127, 134, 162, 165, 206, 302, 424
TfiI GAWTC 2 cut(s) 593, 947
TscAI CASTG 5 cut(s) 383, 431, 580, 756, 1064
TseI GCWGC 3 cut(s) 156, 990, 1134
TspGWI ACGGA 1 cut(s) 780
TspRI CASTG 5 cut(s) 383, 431, 580, 756, 1064
Tth111I GACNNNGTC 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 190
XagI CCTNNNNNAGG 1 cut(s) 125
XapI RAATTY 3 cut(s) 490, 866, 872
XceI RCATGY 1 cut(s) 759
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XmiI GTMKAC 1 cut(s) 36
XmnI GAANNNNTTC 1 cut(s) 946
XspI CTAG 1 cut(s) 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.