Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004309

Physical Location & Seq

Genomic Coordinates Reverse (-)

28182905 .. 28184378

Gene Structure 1474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1187400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGATTGATATCGCAGTTTGTTGCTGTCTTCCGTGCATTTTTACACTTTTATATGCTGTCGCAGATCAGGATGGAGCATCTATGGAAGACATCGAACAACTTTCAAAATTTAGATTCAAAAAAGTTGCAAATGAGAAAGTTGCCGATGATGTACAAGGTGGAGTAATGACTGAATGTGGAACAGATTCACCCATCAAACATGAGTGCTGCATCTGCCTTTCTTGTTATGATGATGGAGTGGAACTAAGGCAACTTCCTTGTGCCCACCATTTTCACTGTTCCTGCATCAACAAGTGGCTTTTTATCAACGCTAGCTGTCCTCTCTGCAAGTACAATATCTTGAAGAGTAGCAGCCAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031090 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

121

Amino Acids

13.35

Weight (kDa)

5.18

Isoelectric Point (pI)

60.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	63 - 110	4.3e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	68 - 110	3.4e-11	Ring finger domain
zf-RING_11	PF17123	68 - 96	3.6e-07	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12760 AT1G12760 AT1G63170
fragaria_vesca	FvH4_5g01740 FvH4_5g01740 FvH4_5g01740 FvH4_5g01740
malus_domestica	MD00G1110500.v1.1 MD04G1044500.v1.1 MD04G1064900.v1.1 MD10G1187400.v1.1 MD11G1252000.v1.1 MD13G1133300.v1.1
prunus_persica	Prupe.5G092900_v2.0.a1 Prupe.5G092900_v2.0.a1 Prupe.5G092900_v2.0.a1
pyrus_communis	pycom04g05870 pycom06g07380
rosa_chinensis	RchiOBHm_Chr7g0198981
rosa_laevigata	RLG00000003827
rosa_multiflora	Rmu_co8298497.1_g000001 Rmu_sc0006266.1_g000024 Rmu_sc0007328.1_g000010
rosa_roxburghii	Rroxscaffold_3G00257250
rosa_rugosa	Rorug07G0051800 Rorug07G0051900 Rorug07G0051900
rosa_samantha	Rh7AG174900 Rh7BG178100 Rh7CG184100 Rh7DG177500
rosa_wichuraiana	Rw7G015340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	107
AfaI	GTAC	2 cut(s)	153, 332
AgsI	TTSAA	3 cut(s)	105, 118, 343
AluBI	AGCT	1 cut(s)	315
AluI	AGCT	1 cut(s)	315
ApeKI	GCWGC	2 cut(s)	207, 351
ApoI	RAATTY	1 cut(s)	107
Asp700I	GAANNNNTTC	1 cut(s)	184
AsuHPI	GGTGA	1 cut(s)	180
AsuNHI	GCTAGC	1 cut(s)	311
BaeGI	GKGCMC	1 cut(s)	265
BbsI	GAAGAC	2 cut(s)	20, 93
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	3 cut(s)	65, 200, 227
BfaI	CTAG	1 cut(s)	312
BisI	GCNGC	2 cut(s)	208, 352
BlsI	GCNGC	2 cut(s)	209, 353
BmsI	GCATC	3 cut(s)	86, 219, 294
BmtI	GCTAGC	1 cut(s)	315
BpiI	GAAGAC	2 cut(s)	20, 93
BsaBI	GATNNNNATC	1 cut(s)	8
Bse8I	GATNNNNATC	1 cut(s)	8
BseGI	GGATG	1 cut(s)	76
BseJI	GATNNNNATC	1 cut(s)	8
BseSI	GKGCMC	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp1407I	TGTACA	1 cut(s)	151
Bsp143I	GATC	1 cut(s)	64
BspOI	GCTAGC	1 cut(s)	315
BsrGI	TGTACA	1 cut(s)	151
BssMI	GATC	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	1 cut(s)	338
BstAUI	TGTACA	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	313
BstDEI	CTNAG	1 cut(s)	245
BstF5I	GGATG	1 cut(s)	76
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	213
BstSLI	GKGCMC	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	194
BstV2I	GAAGAC	2 cut(s)	20, 93
BtsCI	GGATG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	274
Cac8I	GCNNGC	1 cut(s)	313
Csp6I	GTAC	2 cut(s)	152, 331
CviAII	CATG	1 cut(s)	200
CviJI	RGCY	3 cut(s)	298, 315, 354
CviKI_1	RGCY	3 cut(s)	298, 315, 354
CviQI	GTAC	2 cut(s)	152, 331
DdeI	CTNAG	1 cut(s)	245
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
Eco32I	GATATC	1 cut(s)	10
EcoRV	GATATC	1 cut(s)	10
FaeI	CATG	1 cut(s)	203
FaiI	YATR	5 cut(s)	52, 54, 83, 201, 228
FatI	CATG	1 cut(s)	199
Fnu4HI	GCNGC	2 cut(s)	208, 352
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	2 cut(s)	208, 352
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	2 cut(s)	208, 352
Hin1II	CATG	1 cut(s)	203
HinfI	GANTC	2 cut(s)	114, 185
HphI	GGTGA	1 cut(s)	180
Hpy188III	TCNNGA	2 cut(s)	68, 340
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	5 cut(s)	36, 128, 210, 285, 327
HpyF10VI	GCNNNNNNNGC	1 cut(s)	213
HpyF3I	CTNAG	1 cut(s)	245
Hsp92II	CATG	1 cut(s)	203
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	2 cut(s)	53, 295
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	3 cut(s)	86, 219, 294
MaeI	CTAG	1 cut(s)	312
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	3 cut(s)	20, 98, 355
MhlI	GDGCHC	1 cut(s)	265
MluCI	AATT	1 cut(s)	107
MnlI	CCTC	1 cut(s)	330
MroXI	GAANNNNTTC	1 cut(s)	184
MwoI	GCNNNNNNNGC	1 cut(s)	213
NdeII	GATC	1 cut(s)	64
NheI	GCTAGC	1 cut(s)	311
NlaIII	CATG	1 cut(s)	203
PdmI	GAANNNNTTC	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	114, 185
PkrI	GCNGC	2 cut(s)	209, 353
RsaI	GTAC	2 cut(s)	153, 332
RsaNI	GTAC	2 cut(s)	152, 331
SatI	GCNGC	2 cut(s)	208, 352
Sau3AI	GATC	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	265
SetI	ASST	2 cut(s)	160, 317
SfaNI	GCATC	3 cut(s)	86, 219, 294
Sse9I	AATT	1 cut(s)	107
SspMI	CTAG	1 cut(s)	312
TaaI	ACNGT	1 cut(s)	278
TaqI	TCGA	1 cut(s)	93
TasI	AATT	1 cut(s)	107
TatI	WGTACW	2 cut(s)	151, 330
TfiI	GAWTC	2 cut(s)	114, 185
TscAI	CASTG	1 cut(s)	281
TseI	GCWGC	2 cut(s)	207, 351
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	1 cut(s)	281
XapI	RAATTY	1 cut(s)	107
XmnI	GAANNNNTTC	1 cut(s)	184
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.