Prupe.5G092900_v2.0.a1

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
10306631 .. 10311087
4457 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G092900.3

Sequence Viewer

Length: 1161 bp
ATGGCCTCACCCAACCGATCCGTGGACGACATCGTCGATACGACGCCGTTGCTCAGCAACTCGGGCGGGTCGTCCGACGAGTCCAACTCGGGGCGCCACCGAATTGTGCGCCCCCAGAGCCTGCGCGACGCCGCGCGGTTTCTACGCCAAGCCAGCAGCCGTCGGCTCATGCGCGAGCCGTCGATGCTGGTTCGCGAGACGGCGGCGGAGCAGTTGGAGGAGAGGCAGAGCGATTGGGCGTATTCGAAGCCCGTGGTGGTTCTCGACATCATCTGGAACTTCGCATTCGTCGTCGTCGCGGCAACGGTCCTGGTTCTAAGCCGATACGAATTGCCGAATATGCCCCTGAGGCTCTGGATCATGGGGTACGCTTTGCAGTGCGTGGTTCATATGGTTTGTGTTTGTGTCGAGTTTCGGAGAAGGCAGTGCCGACAGAGAAGCCGGGTTTTGGGGGTGAATTCGACGGAGGAAGGAGTAGGGAGTGTTGGGAACTTGAGTTCTGGGTCGAGAGAGGAGGATTTGTCATCGCAGTACGTGTCTTTGGCTGATCATATGAATGAGGAGGGTACCAGCAGCGTTGCAAAGCATTTGGAATCTGCAAATACAATGTTTTCATTCATCTGGTGGATCATTGGGTTCTACTGGGTATCAGCAGGTGGTCAAGCTTTAGCGCATACCTCCCCTCAGCTTTACTGGCTATGTATAATTTTCCTGGGTTTTGACGTGTTTTTTGTCGTTTTCTGTGTTGCACTGGCATGTATCATTGGTATCGCTGTTTGTTGCTGTCTTCCATGTATTATTGCACTTTTATACGCCGTGGCAGACCAGCAGGATGGAGCATCCAAGGAAGACGTTGAACAGTTGTCAAAATTCAAATTCAGAAAAGTTGGCAATGAGAAAGTTGCAGGTGATACACAAGGTGGAGGAGTAATGACTGAATGTGGAACAGATTCACCCATTGAACATGTTCTTTCGCAGGACGATGCGGAGTGTTGCATCTGCCTTTCTTCTTACGATGATGGAGTGGAGCTAAGGCAACTTCCTTGTGGCCATCATTTTCACTGTTCCTGCATTGATAAGTGGCTTTATATCAATGCTACCTGTCCTCTCTGCAAGTACAATATATTGAAGAGTACCAGCCATGATCAAGTGGAAGTGTAG

Protein Analysis

387

Amino Acids

42.92

Weight (kDa)

5.41

Isoelectric Point (pI)

52.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 644, 896
AasI GACNNNNNNGTC 1 cut(s) 32
Acc36I ACCTGC 2 cut(s) 644, 896
Acc65I GGTACC 1 cut(s) 566
AccB1I GGYRCC 2 cut(s) 93, 566
AccII CGCG 6 cut(s) 126, 134, 136, 174, 195, 299
AciI CCGC 7 cut(s) 66, 132, 136, 203, 206, 299, 986
AclWI GGATC 3 cut(s) 12, 365, 635
AcoI YGGCCR 1 cut(s) 1048
AcsI RAATTY 3 cut(s) 457, 869, 875
AcyI GRCGYC 3 cut(s) 44, 94, 129
AdeI CACNNNGTG 1 cut(s) 920
AfaI GTAC 5 cut(s) 368, 533, 568, 1118, 1135
AfiI CCNNNNNNNGG 3 cut(s) 22, 90, 448
AflIII ACRYGT 3 cut(s) 534, 723, 964
AgsI TTSAA 4 cut(s) 857, 874, 962, 1129
AjiI CACGTC 1 cut(s) 724
AjnI CCWGG 2 cut(s) 309, 711
AloI GAACNNNNNNTCC 2 cut(s) 481, 513
AluBI AGCT 3 cut(s) 665, 688, 1030
AluI AGCT 3 cut(s) 665, 688, 1030
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 3 cut(s) 12, 365, 635
AlwNI CAGNNNCTG 1 cut(s) 121
Ama87I CYCGRG 2 cut(s) 61, 88
AoxI GGCC 2 cut(s) 3, 1048
ApeKI GCWGC 2 cut(s) 156, 573
ApoI RAATTY 3 cut(s) 457, 869, 875
ArsI GACNNNNNNTTYG 2 cut(s) 713, 745
Asp700I GAANNNNTTC 2 cut(s) 949, 966
Asp718I GGTACC 1 cut(s) 566
AspLEI GCGC 6 cut(s) 96, 111, 126, 136, 174, 673
AspS9I GGNCC 1 cut(s) 307
AsuC2I CCSGG 1 cut(s) 443
AsuHPI GGTGA 3 cut(s) 466, 920, 945
AsuII TTCGAA 1 cut(s) 245
AvaI CYCGRG 2 cut(s) 61, 88
AvaII GGWCC 1 cut(s) 307
AxyI CCTNAGG 1 cut(s) 347
BalI TGGCCA 1 cut(s) 1050
BanI GGYRCC 2 cut(s) 93, 566
BbsI GAAGAC 2 cut(s) 779, 855
BbvCI CCTCAGC 1 cut(s) 684
BbvI GCAGC 2 cut(s) 168, 585
BccI CCATC 3 cut(s) 827, 1013, 1059
BceAI ACGGC 5 cut(s) 31, 144, 163, 216, 800
BcgI CGANNNNNNTGC 2 cut(s) 31, 65
BciT130I CCWGG 2 cut(s) 311, 713
BclI TGATCA 2 cut(s) 547, 1144
BcnI CCSGG 1 cut(s) 443
BcoDI GTCTC 1 cut(s) 191
BfoI RGCGCY 1 cut(s) 97
BfuAI ACCTGC 2 cut(s) 644, 896
BglI GCCNNNNNGGC 1 cut(s) 349
BisI GCNGC 5 cut(s) 132, 157, 204, 300, 574
BlpI GCTNAGC 1 cut(s) 53
BlsI GCNGC 5 cut(s) 133, 158, 205, 301, 575
Bme1390I CCNGG 3 cut(s) 311, 443, 713
Bme18I GGWCC 1 cut(s) 307
BmeT110I CYCGRG 2 cut(s) 61, 88
BmgBI CACGTC 1 cut(s) 724
BmgT120I GGNCC 1 cut(s) 307
BmiI GGNNCC 2 cut(s) 95, 568
BmrFI CCNGG 3 cut(s) 311, 443, 713
BmrI ACTGGG 1 cut(s) 652
BmsI GCATC 4 cut(s) 174, 848, 973, 1005
BmuI ACTGGG 1 cut(s) 652
BpiI GAAGAC 2 cut(s) 779, 855
BplI GAGNNNNNCTC 2 cut(s) 71, 103
Bpu10I CCTNAGC 2 cut(s) 684, 1031
Bpu1102I GCTNAGC 1 cut(s) 53
Bpu14I TTCGAA 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 514
BpuMI CCSGG 1 cut(s) 443
BsaAI YACGTR 1 cut(s) 535
BsaHI GRCGYC 3 cut(s) 44, 94, 129
BsaJI CCNNGG 5 cut(s) 21, 252, 712, 816, 843
BsaXI ACNNNNNCTCC 2 cut(s) 506, 536
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 90, 448
Bse1I ACTGG 3 cut(s) 647, 698, 756
Bse21I CCTNAGG 1 cut(s) 347
Bse3DI GCAATG 1 cut(s) 898
BseBI CCWGG 2 cut(s) 311, 713
BseDI CCNNGG 5 cut(s) 21, 252, 712, 816, 843
BseGI GGATG 2 cut(s) 838, 839
BseLI CCNNNNNNNGG 3 cut(s) 22, 90, 448
BseMI GCAATG 1 cut(s) 898
BseMII CTCAG 3 cut(s) 67, 338, 698
BseNI ACTGG 3 cut(s) 647, 698, 756
BseRI GAGGAG 4 cut(s) 233, 527, 575, 939
BseXI GCAGC 2 cut(s) 168, 585
Bsh1236I CGCG 6 cut(s) 126, 134, 136, 174, 195, 299
BshFI GGCC 2 cut(s) 5, 1050
BshNI GGYRCC 2 cut(s) 93, 566
BsiHKCI CYCGRG 2 cut(s) 61, 88
BsiSI CCGG 1 cut(s) 442
BslI CCNNNNNNNGG 3 cut(s) 22, 90, 448
BsmAI GTCTC 1 cut(s) 191
BsmBI CGTCTC 1 cut(s) 191
BsmI GAATGC 1 cut(s) 284
BsnI GGCC 2 cut(s) 5, 1050
BsoBI CYCGRG 2 cut(s) 61, 88
Bsp119I TTCGAA 1 cut(s) 245
Bsp143I GATC 5 cut(s) 17, 357, 547, 627, 1144
Bsp1720I GCTNAGC 1 cut(s) 53
Bsp68I TCGCGA 1 cut(s) 195
BspACI CCGC 7 cut(s) 66, 132, 136, 203, 206, 299, 986
BspANI GGCC 2 cut(s) 5, 1050
BspCNI CTCAG 3 cut(s) 66, 339, 697
BspFNI CGCG 6 cut(s) 126, 134, 136, 174, 195, 299
BspLI GGNNCC 2 cut(s) 95, 568
BspMI ACCTGC 2 cut(s) 644, 896
BspPI GGATC 3 cut(s) 12, 365, 635
BspT104I TTCGAA 1 cut(s) 245
BspT107I GGYRCC 2 cut(s) 93, 566
BsrDI GCAATG 1 cut(s) 898
BsrI ACTGG 3 cut(s) 647, 698, 756
BssECI CCNNGG 5 cut(s) 21, 252, 712, 816, 843
BssMI GATC 5 cut(s) 17, 357, 547, 627, 1144
BssNI GRCGYC 3 cut(s) 44, 94, 129
BssT1I CCWWGG 1 cut(s) 843
Bst2UI CCWGG 2 cut(s) 311, 713
Bst4CI ACNGT 3 cut(s) 307, 861, 1064
Bst6I CTCTTC 1 cut(s) 1124
BstACI GRCGYC 3 cut(s) 44, 94, 129
BstBAI YACGTR 1 cut(s) 535
BstBI TTCGAA 1 cut(s) 245
BstC8I GCNNGC 3 cut(s) 122, 154, 176
BstDEI CTNAG 5 cut(s) 53, 317, 347, 684, 1031
BstDSI CCRYGG 3 cut(s) 21, 252, 816
BstF5I GGATG 2 cut(s) 838, 839
BstFNI CGCG 6 cut(s) 126, 134, 136, 174, 195, 299
BstH2I RGCGCY 1 cut(s) 97
BstHHI GCGC 6 cut(s) 96, 111, 126, 136, 174, 673
BstKTI GATC 5 cut(s) 20, 360, 550, 630, 1147
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 5 cut(s) 17, 357, 547, 627, 1144
BstMWI GCNNNNNNNGC 7 cut(s) 63, 117, 153, 184, 340, 349, 694
BstNI CCWGG 2 cut(s) 311, 713
BstNSI RCATGY 2 cut(s) 759, 968
BstSCI CCNGG 3 cut(s) 309, 441, 711
BstUI CGCG 6 cut(s) 126, 134, 136, 174, 195, 299
BstV1I GCAGC 2 cut(s) 168, 585
BstV2I GAAGAC 2 cut(s) 779, 855
BstXI CCANNNNNNTGG 1 cut(s) 833
Bsu36I CCTNAGG 1 cut(s) 347
BsuRI GGCC 2 cut(s) 5, 1050
BtgI CCRYGG 3 cut(s) 21, 252, 816
BtgZI GCGATG 1 cut(s) 510
BtrI CACGTC 1 cut(s) 724
BtsCI GGATG 2 cut(s) 838, 839
BtsI GCAGTG 2 cut(s) 383, 431
BtsIMutI CAGTG 4 cut(s) 383, 431, 749, 1060
BtuMI TCGCGA 1 cut(s) 195
BveI ACCTGC 2 cut(s) 644, 896
Cac8I GCNNGC 3 cut(s) 122, 154, 176
CaiI CAGNNNCTG 1 cut(s) 121
CfoI GCGC 6 cut(s) 96, 111, 126, 136, 174, 673
Cfr13I GGNCC 1 cut(s) 307
CseI GACGC 2 cut(s) 52, 137
Csp6I GTAC 5 cut(s) 367, 532, 567, 1117, 1134
CviAII CATG 6 cut(s) 169, 361, 756, 792, 965, 1142
CviQI GTAC 5 cut(s) 367, 532, 567, 1117, 1134
DdeI CTNAG 5 cut(s) 53, 317, 347, 684, 1031
DinI GGCGCC 1 cut(s) 95
DpnI GATC 5 cut(s) 19, 359, 549, 629, 1146
DpnII GATC 5 cut(s) 17, 357, 547, 627, 1144
DraIII CACNNNGTG 1 cut(s) 920
DrdI GACNNNNNNGTC 1 cut(s) 32
DseDI GACNNNNNNGTC 1 cut(s) 32
EaeI YGGCCR 1 cut(s) 1048
Eam1104I CTCTTC 1 cut(s) 1124
EarI CTCTTC 1 cut(s) 1124
EciI GGCGGA 1 cut(s) 221
Eco130I CCWWGG 1 cut(s) 843
Eco47I GGWCC 1 cut(s) 307
Eco81I CCTNAGG 1 cut(s) 347
Eco88I CYCGRG 2 cut(s) 61, 88
EcoRI GAATTC 1 cut(s) 457
EcoRII CCWGG 2 cut(s) 309, 711
EcoT14I CCWWGG 1 cut(s) 843
EgeI GGCGCC 1 cut(s) 95
EheI GGCGCC 1 cut(s) 95
ErhI CCWWGG 1 cut(s) 843
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 6 cut(s) 172, 364, 759, 795, 968, 1145
FatI CATG 6 cut(s) 168, 360, 755, 791, 964, 1141
FauI CCCGC 1 cut(s) 59
FauNDI CATATG 2 cut(s) 390, 552
FbaI TGATCA 2 cut(s) 547, 1144
Fnu4HI GCNGC 5 cut(s) 132, 157, 204, 300, 574
FokI GGATG 2 cut(s) 826, 845
Fsp4HI GCNGC 5 cut(s) 132, 157, 204, 300, 574
GlaI GCGC 6 cut(s) 95, 110, 125, 135, 173, 672
GluI GCNGC 5 cut(s) 132, 157, 204, 300, 574
HaeII RGCGCY 1 cut(s) 97
HaeIII GGCC 2 cut(s) 5, 1050
HapII CCGG 1 cut(s) 442
HgaI GACGC 2 cut(s) 52, 137
HhaI GCGC 6 cut(s) 96, 111, 126, 136, 174, 673
Hin1I GRCGYC 3 cut(s) 44, 94, 129
Hin1II CATG 6 cut(s) 172, 364, 759, 795, 968, 1145
Hin6I GCGC 6 cut(s) 94, 109, 124, 134, 172, 671
HinP1I GCGC 6 cut(s) 94, 109, 124, 134, 172, 671
HindIII AAGCTT 1 cut(s) 663
HinfI GANTC 3 cut(s) 80, 593, 950
HpaII CCGG 1 cut(s) 442
HphI GGTGA 3 cut(s) 466, 920, 945
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 3 cut(s) 76, 417, 881
Hpy188III TCNNGA 5 cut(s) 194, 263, 274, 355, 507
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 2 cut(s) 414, 464
HpyCH4III ACNGT 3 cut(s) 307, 861, 1064
HpyCH4IV ACGT 3 cut(s) 534, 723, 852
HpyCH4V TGCA 9 cut(s) 376, 581, 599, 749, 803, 905, 996, 1071, 1113
HpyF10VI GCNNNNNNNGC 7 cut(s) 63, 117, 153, 184, 340, 349, 694
HpyF3I CTNAG 5 cut(s) 53, 317, 347, 684, 1031
HpySE526I ACGT 3 cut(s) 534, 723, 852
Hsp92I GRCGYC 3 cut(s) 44, 94, 129
Hsp92II CATG 6 cut(s) 172, 364, 759, 795, 968, 1145
HspAI GCGC 6 cut(s) 94, 109, 124, 134, 172, 671
KasI GGCGCC 1 cut(s) 93
KpnI GGTACC 1 cut(s) 570
Ksp22I TGATCA 2 cut(s) 547, 1144
Kzo9I GATC 5 cut(s) 17, 357, 547, 627, 1144
LmnI GCTCC 3 cut(s) 208, 836, 1027
Lsp1109I GCAGC 2 cut(s) 168, 585
LweI GCATC 4 cut(s) 174, 848, 973, 1005
MaeII ACGT 3 cut(s) 534, 723, 852
MalI GATC 5 cut(s) 19, 359, 549, 629, 1146
MboI GATC 5 cut(s) 17, 357, 547, 627, 1144
MboII GAAGA 4 cut(s) 779, 860, 999, 1141
MlsI TGGCCA 1 cut(s) 1050
MluCI AATT 6 cut(s) 102, 329, 457, 705, 869, 875
MluNI TGGCCA 1 cut(s) 1050
Mly113I GGCGCC 1 cut(s) 94
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 3 cut(s) 99, 108, 195
Mox20I TGGCCA 1 cut(s) 1050
MroXI GAANNNNTTC 2 cut(s) 949, 966
MscI TGGCCA 1 cut(s) 1050
MslI CAYNNNNRTG 2 cut(s) 555, 754
Msp20I TGGCCA 1 cut(s) 1050
MspI CCGG 1 cut(s) 442
MspR9I CCNGG 3 cut(s) 311, 443, 713
Mva1269I GAATGC 1 cut(s) 284
MvaI CCWGG 2 cut(s) 311, 713
MvnI CGCG 6 cut(s) 126, 134, 136, 174, 195, 299
MwoI GCNNNNNNNGC 7 cut(s) 63, 117, 153, 184, 340, 349, 694
NarI GGCGCC 1 cut(s) 94
NciI CCSGG 1 cut(s) 443
NdeI CATATG 2 cut(s) 390, 552
NdeII GATC 5 cut(s) 17, 357, 547, 627, 1144
NlaIII CATG 6 cut(s) 172, 364, 759, 795, 968, 1145
NlaIV GGNNCC 2 cut(s) 95, 568
NruI TCGCGA 1 cut(s) 195
NspI RCATGY 2 cut(s) 759, 968
NspV TTCGAA 1 cut(s) 245
PaqCI CACCTGC 2 cut(s) 644, 896
PciI ACATGT 1 cut(s) 964
PcsI WCGNNNNNNNCGW 3 cut(s) 33, 68, 288
PctI GAATGC 1 cut(s) 284
PdmI GAANNNNTTC 2 cut(s) 949, 966
PfeI GAWTC 2 cut(s) 593, 950
PflFI GACNNNGTC 1 cut(s) 32
PkrI GCNGC 5 cut(s) 133, 158, 205, 301, 575
PleI GAGTC 1 cut(s) 88
PluTI GGCGCC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 88
Ppu21I YACGTR 1 cut(s) 535
PscI ACATGT 1 cut(s) 964
Psp6I CCWGG 2 cut(s) 309, 711
PspGI CCWGG 2 cut(s) 309, 711
PspN4I GGNNCC 2 cut(s) 95, 568
PspPI GGNCC 1 cut(s) 307
PstNI CAGNNNCTG 1 cut(s) 121
PsyI GACNNNGTC 1 cut(s) 32
RruI TCGCGA 1 cut(s) 195
RsaI GTAC 5 cut(s) 368, 533, 568, 1118, 1135
RsaNI GTAC 5 cut(s) 367, 532, 567, 1117, 1134
RseI CAYNNNNRTG 2 cut(s) 555, 754
SatI GCNGC 5 cut(s) 132, 157, 204, 300, 574
Sau3AI GATC 5 cut(s) 17, 357, 547, 627, 1144
Sau96I GGNCC 1 cut(s) 307
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 3 cut(s) 311, 443, 713
SfaNI GCATC 4 cut(s) 174, 848, 973, 1005
SfoI GGCGCC 1 cut(s) 95
SfuI TTCGAA 1 cut(s) 245
SinI GGWCC 1 cut(s) 307
SmiMI CAYNNNNRTG 2 cut(s) 555, 754
SmlI CTYRAG 1 cut(s) 493
SmoI CTYRAG 1 cut(s) 493
Sse9I AATT 6 cut(s) 102, 329, 457, 705, 869, 875
SsiI CCGC 7 cut(s) 66, 132, 136, 203, 206, 299, 986
SspDI GGCGCC 1 cut(s) 93
StyD4I CCNGG 3 cut(s) 309, 441, 711
StyI CCWWGG 1 cut(s) 843
TaaI ACNGT 3 cut(s) 307, 861, 1064
TaiI ACGT 3 cut(s) 537, 726, 855
TaqI TCGA 7 cut(s) 36, 182, 245, 264, 408, 461, 506
TasI AATT 6 cut(s) 102, 329, 457, 705, 869, 875
TatI WGTACW 1 cut(s) 1116
TauI GCSGC 3 cut(s) 134, 206, 302
TfiI GAWTC 2 cut(s) 593, 950
TscAI CASTG 4 cut(s) 383, 431, 756, 1067
TseI GCWGC 2 cut(s) 156, 573
TspDTI ATGAA 4 cut(s) 377, 569, 603, 607
TspGWI ACGGA 2 cut(s) 10, 479
TspRI CASTG 4 cut(s) 383, 431, 756, 1067
Tth111I GACNNNGTC 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 307
XapI RAATTY 3 cut(s) 457, 869, 875
XceI RCATGY 2 cut(s) 759, 968
XcmI CCANNNNNNNNNTGG 1 cut(s) 19
XmnI GAANNNNTTC 2 cut(s) 949, 966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.