Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0004309

Physical Location & Seq

Genomic Coordinates Reverse (-)

5184522 .. 5185924

Gene Structure 1403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1044500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGTTTTGTTGCTGTCTTCCGTGCATTATTGCACTTTTATATGCTATCGTAGATCAGGATGGAGCATCTAAGGAAGACATCGAACATCTTTCAAAATTCAGATTCAGAAAGGTTGCCAATGAGAAAGTTGCCAGTGACGTACAAGGTGGAGGAGTAATGATTGATTGTGGAACAGATTCACCCATCGAACATGTTATTTCTCAAGAGGATGCGGAGTGCTGCATCTGCCTTTCTTCTTATGATGATGGAGTGGAACTAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031090 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

88

Amino Acids

9.52

Weight (kDa)

4.35

Isoelectric Point (pI)

53.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12760 AT1G12760 AT1G63170
fragaria_vesca	FvH4_5g01740 FvH4_5g01740 FvH4_5g01740 FvH4_5g01740
malus_domestica	MD00G1110500.v1.1 MD04G1044500.v1.1 MD04G1064900.v1.1 MD10G1187400.v1.1 MD11G1252000.v1.1 MD13G1133300.v1.1
prunus_persica	Prupe.5G092900_v2.0.a1 Prupe.5G092900_v2.0.a1 Prupe.5G092900_v2.0.a1
pyrus_communis	pycom04g05870 pycom06g07380
rosa_chinensis	RchiOBHm_Chr7g0198981
rosa_laevigata	RLG00000003827
rosa_multiflora	Rmu_co8298497.1_g000001 Rmu_sc0006266.1_g000024 Rmu_sc0007328.1_g000010
rosa_roxburghii	Rroxscaffold_3G00257250
rosa_rugosa	Rorug07G0051800 Rorug07G0051900 Rorug07G0051900
rosa_samantha	Rh7AG174900 Rh7BG178100 Rh7CG184100 Rh7DG177500
rosa_wichuraiana	Rw7G015340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	212
AcsI	RAATTY	1 cut(s)	95
AfaI	GTAC	1 cut(s)	141
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	219
ApoI	RAATTY	1 cut(s)	95
Asp700I	GAANNNNTTC	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	171
BbsI	GAAGAC	2 cut(s)	8, 81
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	3 cut(s)	53, 191, 239
BisI	GCNGC	1 cut(s)	220
BlsI	GCNGC	1 cut(s)	221
BmsI	GCATC	3 cut(s)	74, 199, 231
BpiI	GAAGAC	2 cut(s)	8, 81
BpuEI	CTTGAG	1 cut(s)	186
Bse1I	ACTGG	1 cut(s)	132
BseGI	GGATG	2 cut(s)	64, 214
BseNI	ACTGG	1 cut(s)	132
BseRI	GAGGAG	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	52
BspACI	CCGC	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	132
BssMI	GATC	1 cut(s)	52
BstDEI	CTNAG	2 cut(s)	69, 257
BstF5I	GGATG	2 cut(s)	64, 214
BstKTI	GATC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstNSI	RCATGY	1 cut(s)	194
BstV1I	GCAGC	1 cut(s)	206
BstV2I	GAAGAC	2 cut(s)	8, 81
BtsCI	GGATG	2 cut(s)	64, 214
BtsIMutI	CAGTG	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	140
CviAII	CATG	1 cut(s)	191
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	2 cut(s)	69, 257
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
FaeI	CATG	1 cut(s)	194
FaiI	YATR	4 cut(s)	40, 42, 192, 240
FatI	CATG	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	220
FokI	GGATG	2 cut(s)	71, 221
Fsp4HI	GCNGC	1 cut(s)	220
GluI	GCNGC	1 cut(s)	220
Hin1II	CATG	1 cut(s)	194
HinfI	GANTC	2 cut(s)	102, 176
HphI	GGTGA	1 cut(s)	171
Hpy188I	TCNGA	2 cut(s)	101, 107
Hpy188III	TCNNGA	2 cut(s)	56, 203
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	3 cut(s)	24, 32, 222
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	2 cut(s)	69, 257
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	194
Kzo9I	GATC	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	62
LpnPI	CCDG	2 cut(s)	41, 145
Lsp1109I	GCAGC	1 cut(s)	206
LweI	GCATC	3 cut(s)	74, 199, 231
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	3 cut(s)	8, 86, 225
MluCI	AATT	1 cut(s)	95
MnlI	CCTC	2 cut(s)	143, 199
MroXI	GAANNNNTTC	1 cut(s)	175
MwoI	GCNNNNNNNGC	1 cut(s)	225
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	1 cut(s)	194
NmuCI	GTSAC	1 cut(s)	134
NspI	RCATGY	1 cut(s)	194
PciI	ACATGT	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	175
PfeI	GAWTC	2 cut(s)	102, 176
PkrI	GCNGC	1 cut(s)	221
PscI	ACATGT	1 cut(s)	190
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
SatI	GCNGC	1 cut(s)	220
Sau3AI	GATC	1 cut(s)	52
SetI	ASST	4 cut(s)	114, 141, 148, 263
SfaNI	GCATC	3 cut(s)	74, 199, 231
SgeI	CNNG	6 cut(s)	33, 68, 144, 155, 203, 215
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
Sse9I	AATT	1 cut(s)	95
SsiI	CCGC	1 cut(s)	212
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	81, 186
TasI	AATT	1 cut(s)	95
TfiI	GAWTC	2 cut(s)	102, 176
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	1 cut(s)	219
Tsp45I	GTSAC	1 cut(s)	134
TspGWI	ACGGA	1 cut(s)	9
TspRI	CASTG	1 cut(s)	139
XapI	RAATTY	1 cut(s)	95
XceI	RCATGY	1 cut(s)	194
XmnI	GAANNNNTTC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.