Rh7AG174900

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
15339214 .. 15342885
3672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG174900.1

Sequence Viewer

Length: 957 bp
ATGGCTTCTTCTTCACCCAACCGATCCGCCGAGGACATCGTCGATACGACGCCGTTGCTCCGAAATTCGGGCGGGTCGTCCGACGAGAGCAACTCGGGCCGCCAATTAGTGCGCCGGCAGAGCCTCCGCCAGGCTGCGCGGTTCCTCCGCCAGGCCAGCAGCCGGCGGCTGATGCGCGAGCCGTCGATGCTGGTGCGCGAGACCGCCGCGGAGCAATTGGAGGAGCGCCAGAGCGATTGGGCCTACTCCAAACCCGTCGTCGTTTTGGACATCATCTGGAACTTCGCTTTCGTCGTCGTGGCGGCGACGGTTCTGGTGCTCAGCCGGTTAGAGTCGCCGGATATGCCGTTGAGGCTTTGGATTGTGGGCTACGCTCTGCAATGCGTGCTGCATATGGTTTGCGTTTGTGTCGAGTTCCGGCGGCGCCAGAACCGGCGGTTTCCCGGGATGAATTCCGGTGACGGAGGGATTGGGAGCGCCGGGAATTCGAGCCCCAGGTCCAGAGACGACTCGTCGCAGTACGTGTCTTTAGCTGATCACTTGAATGAGGAGGGTACCAGCAGTGTTGCTAAGCATCTAGAATCGGCAAATACAATGTTTTCGTTCATCTGGTGGATCATTGGATTCTACTGGGTATCAGCAGGCGGGCAATCTTTGGCACGTTCCTCCCCTCAGCTTTACTGGCTTTGTATAATTTTCCTGGGTTTTGATGTGTTTTTTGTCGTTTTCTGTGTTGCACTGGCTTGTATCATCGGGATCGCTGTTTGTTGCTGTCTTCCATGTATTATTGCACTTTTATACGCCGTGGCAGACCAGGTAGTTCTCGTATATTCTTCTCTCTTGTGTGTGTGTGGGGGTGTGTTTCATGTTCATTTCTATCTGTGTCTTCTCATAGTAATCCATAGGTTATGTTTATATTACTGCAACGCCAGAAAGAGGCAGCAGACCTGCTTGTAA

Protein Analysis

318

Amino Acids

35.56

Weight (kDa)

8.47

Isoelectric Point (pI)

63.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 554
AccB1I GGYRCC 2 cut(s) 423, 554
AccII CGCG 4 cut(s) 139, 177, 198, 209
AclWI GGATC 3 cut(s) 18, 623, 764
AcsI RAATTY 3 cut(s) 64, 451, 484
AcyI GRCGYC 2 cut(s) 50, 424
AfaI GTAC 2 cut(s) 521, 556
AfiI CCNNNNNNNGG 5 cut(s) 67, 130, 151, 162, 936
AflIII ACRYGT 1 cut(s) 522
AgsI TTSAA 1 cut(s) 544
AhdI GACNNNNNGTC 1 cut(s) 511
AjnI CCWGG 5 cut(s) 129, 150, 494, 699, 813
AluBI AGCT 2 cut(s) 533, 676
AluI AGCT 2 cut(s) 533, 676
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 2 cut(s) 194, 498
AlwI GGATC 3 cut(s) 18, 623, 764
Ama87I CYCGRG 2 cut(s) 94, 443
AoxI GGCC 3 cut(s) 97, 153, 240
ApeKI GCWGC 4 cut(s) 134, 159, 388, 940
ApoI RAATTY 3 cut(s) 64, 451, 484
ArsI GACNNNNNNTTYG 2 cut(s) 243, 275
Asp718I GGTACC 1 cut(s) 554
AspLEI GCGC 7 cut(s) 114, 139, 177, 198, 228, 426, 479
AspS9I GGNCC 3 cut(s) 97, 240, 498
AsuC2I CCSGG 3 cut(s) 444, 445, 481
AsuHPI GGTGA 2 cut(s) 6, 470
AvaI CYCGRG 2 cut(s) 94, 443
AvaII GGWCC 1 cut(s) 498
BanI GGYRCC 2 cut(s) 423, 554
BanII GRGCYC 1 cut(s) 494
BbsI GAAGAC 2 cut(s) 767, 878
Bbv12I GWGCWC 1 cut(s) 321
BbvCI CCTCAGC 1 cut(s) 672
BbvI GCAGC 4 cut(s) 121, 171, 375, 952
BceAI ACGGC 4 cut(s) 37, 166, 331, 788
BcgI CGANNNNNNTGC 4 cut(s) 37, 71, 175, 209
BciT130I CCWGG 5 cut(s) 131, 152, 496, 701, 815
BclI TGATCA 1 cut(s) 535
BcnI CCSGG 3 cut(s) 444, 445, 481
BcoDI GTCTC 2 cut(s) 194, 498
BfaI CTAG 1 cut(s) 578
BfoI RGCGCY 3 cut(s) 229, 427, 480
BglI GCCNNNNNGGC 1 cut(s) 352
BisI GCNGC 9 cut(s) 100, 135, 160, 167, 207, 303, 389, 422, 941
BlpI GCTNAGC 2 cut(s) 320, 570
BlsI GCNGC 9 cut(s) 101, 136, 161, 168, 208, 304, 390, 423, 942
Bme1390I CCNGG 8 cut(s) 131, 152, 444, 445, 481, 496, 701, 815
Bme18I GGWCC 1 cut(s) 498
BmeRI GACNNNNNGTC 1 cut(s) 511
BmeT110I CYCGRG 2 cut(s) 94, 443
BmgT120I GGNCC 3 cut(s) 97, 240, 498
BmiI GGNNCC 3 cut(s) 143, 425, 556
BmrFI CCNGG 8 cut(s) 131, 152, 444, 445, 481, 496, 701, 815
BmrI ACTGGG 1 cut(s) 640
BmsI GCATC 3 cut(s) 162, 177, 583
BmuI ACTGGG 1 cut(s) 640
BpiI GAAGAC 2 cut(s) 767, 878
BplI GAGNNNNNCTC 2 cut(s) 77, 109
Bpu10I CCTNAGC 1 cut(s) 672
Bpu1102I GCTNAGC 2 cut(s) 320, 570
BpuMI CCSGG 3 cut(s) 444, 445, 481
BsaAI YACGTR 1 cut(s) 523
BsaHI GRCGYC 2 cut(s) 50, 424
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 6 cut(s) 30, 207, 443, 494, 700, 804
BsaWI WCCGGW 1 cut(s) 455
Bsc4I CCNNNNNNNGG 5 cut(s) 67, 130, 151, 162, 936
Bse118I RCCGGY 4 cut(s) 114, 162, 324, 432
Bse1I ACTGG 3 cut(s) 635, 686, 744
Bse3DI GCAATG 1 cut(s) 386
BseBI CCWGG 5 cut(s) 131, 152, 496, 701, 815
BseDI CCNNGG 6 cut(s) 30, 207, 443, 494, 700, 804
BseGI GGATG 1 cut(s) 453
BseLI CCNNNNNNNGG 5 cut(s) 67, 130, 151, 162, 936
BseMI GCAATG 1 cut(s) 386
BseMII CTCAG 2 cut(s) 334, 686
BseNI ACTGG 3 cut(s) 635, 686, 744
BseRI GAGGAG 2 cut(s) 236, 563
BseXI GCAGC 4 cut(s) 121, 171, 375, 952
Bsh1236I CGCG 4 cut(s) 139, 177, 198, 209
BshFI GGCC 3 cut(s) 99, 155, 242
BshNI GGYRCC 2 cut(s) 423, 554
BsiHKAI GWGCWC 1 cut(s) 321
BsiHKCI CYCGRG 2 cut(s) 94, 443
BsiSI CCGG 9 cut(s) 115, 163, 325, 338, 418, 433, 444, 456, 480
BslI CCNNNNNNNGG 5 cut(s) 67, 130, 151, 162, 936
BsmAI GTCTC 2 cut(s) 194, 498
BsmBI CGTCTC 1 cut(s) 498
BsnI GGCC 3 cut(s) 99, 155, 242
Bso31I GGTCTC 1 cut(s) 194
BsoBI CYCGRG 2 cut(s) 94, 443
Bsp1286I GDGCHC 2 cut(s) 321, 494
Bsp143I GATC 4 cut(s) 23, 535, 615, 756
Bsp1720I GCTNAGC 2 cut(s) 320, 570
BspANI GGCC 3 cut(s) 99, 155, 242
BspCNI CTCAG 2 cut(s) 333, 685
BspFNI CGCG 4 cut(s) 139, 177, 198, 209
BspLI GGNNCC 3 cut(s) 143, 425, 556
BspPI GGATC 3 cut(s) 18, 623, 764
BspT107I GGYRCC 2 cut(s) 423, 554
BspTNI GGTCTC 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 386
BsrFI RCCGGY 4 cut(s) 114, 162, 324, 432
BsrI ACTGG 3 cut(s) 635, 686, 744
BssAI RCCGGY 4 cut(s) 114, 162, 324, 432
BssECI CCNNGG 6 cut(s) 30, 207, 443, 494, 700, 804
BssMI GATC 4 cut(s) 23, 535, 615, 756
BssNI GRCGYC 2 cut(s) 50, 424
Bst2UI CCWGG 5 cut(s) 131, 152, 496, 701, 815
Bst4CI ACNGT 1 cut(s) 310
BstACI GRCGYC 2 cut(s) 50, 424
BstAPI GCANNNNNTGC 1 cut(s) 385
BstBAI YACGTR 1 cut(s) 523
BstC8I GCNNGC 7 cut(s) 116, 157, 164, 179, 386, 643, 647
BstDEI CTNAG 3 cut(s) 320, 570, 672
BstDSI CCRYGG 2 cut(s) 207, 804
BstENI CCTNNNNNAGG 2 cut(s) 128, 149
BstF5I GGATG 1 cut(s) 453
BstFNI CGCG 4 cut(s) 139, 177, 198, 209
BstH2I RGCGCY 3 cut(s) 229, 427, 480
BstHHI GCGC 7 cut(s) 114, 139, 177, 198, 228, 426, 479
BstKTI GATC 4 cut(s) 26, 538, 618, 759
BstMAI GTCTC 2 cut(s) 194, 498
BstMBI GATC 4 cut(s) 23, 535, 615, 756
BstMWI GCNNNNNNNGC 9 cut(s) 96, 120, 156, 172, 187, 343, 352, 385, 682
BstNI CCWGG 5 cut(s) 131, 152, 496, 701, 815
BstSCI CCNGG 8 cut(s) 129, 150, 442, 443, 479, 494, 699, 813
BstUI CGCG 4 cut(s) 139, 177, 198, 209
BstV1I GCAGC 4 cut(s) 121, 171, 375, 952
BstV2I GAAGAC 2 cut(s) 767, 878
BsuRI GGCC 3 cut(s) 99, 155, 242
BtgI CCRYGG 2 cut(s) 207, 804
BtsCI GGATG 1 cut(s) 453
BtsI GCAGTG 1 cut(s) 568
BtsIMutI CAGTG 2 cut(s) 568, 737
Cac8I GCNNGC 7 cut(s) 116, 157, 164, 179, 386, 643, 647
CfoI GCGC 7 cut(s) 114, 139, 177, 198, 228, 426, 479
Cfr10I RCCGGY 4 cut(s) 114, 162, 324, 432
Cfr13I GGNCC 3 cut(s) 97, 240, 498
Cfr42I CCGCGG 1 cut(s) 210
Cfr9I CCCGGG 1 cut(s) 443
CseI GACGC 1 cut(s) 58
CsiI ACCWGGT 1 cut(s) 813
Csp6I GTAC 2 cut(s) 520, 555
CviAII CATG 2 cut(s) 780, 866
CviQI GTAC 2 cut(s) 520, 555
DdeI CTNAG 3 cut(s) 320, 570, 672
DinI GGCGCC 1 cut(s) 425
DpnI GATC 4 cut(s) 25, 537, 617, 758
DpnII GATC 4 cut(s) 23, 535, 615, 756
DriI GACNNNNNGTC 1 cut(s) 511
Eam1105I GACNNNNNGTC 1 cut(s) 511
EciI GGCGGA 3 cut(s) 16, 116, 137
Eco24I GRGCYC 1 cut(s) 494
Eco31I GGTCTC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 498
Eco88I CYCGRG 2 cut(s) 94, 443
EcoNI CCTNNNNNAGG 2 cut(s) 128, 149
EcoRI GAATTC 2 cut(s) 451, 484
EcoRII CCWGG 5 cut(s) 129, 150, 494, 699, 813
EcoT38I GRGCYC 1 cut(s) 494
EgeI GGCGCC 1 cut(s) 425
EheI GGCGCC 1 cut(s) 425
Esp3I CGTCTC 1 cut(s) 498
FaeI CATG 2 cut(s) 783, 869
FatI CATG 2 cut(s) 779, 865
FauI CCCGC 2 cut(s) 65, 638
FauNDI CATATG 1 cut(s) 393
FbaI TGATCA 1 cut(s) 535
Fnu4HI GCNGC 9 cut(s) 100, 135, 160, 167, 207, 303, 389, 422, 941
FokI GGATG 1 cut(s) 460
FriOI GRGCYC 1 cut(s) 494
Fsp4HI GCNGC 9 cut(s) 100, 135, 160, 167, 207, 303, 389, 422, 941
FspBI CTAG 1 cut(s) 578
GlaI GCGC 7 cut(s) 113, 138, 176, 197, 227, 425, 478
GluI GCNGC 9 cut(s) 100, 135, 160, 167, 207, 303, 389, 422, 941
HaeII RGCGCY 3 cut(s) 229, 427, 480
HaeIII GGCC 3 cut(s) 99, 155, 242
HapII CCGG 9 cut(s) 115, 163, 325, 338, 418, 433, 444, 456, 480
HgaI GACGC 1 cut(s) 58
HhaI GCGC 7 cut(s) 114, 139, 177, 198, 228, 426, 479
Hin1I GRCGYC 2 cut(s) 50, 424
Hin1II CATG 2 cut(s) 783, 869
Hin6I GCGC 7 cut(s) 112, 137, 175, 196, 226, 424, 477
HinP1I GCGC 7 cut(s) 112, 137, 175, 196, 226, 424, 477
HinfI GANTC 4 cut(s) 332, 509, 581, 624
HpaII CCGG 9 cut(s) 115, 163, 325, 338, 418, 433, 444, 456, 480
HphI GGTGA 2 cut(s) 6, 470
Hpy188I TCNGA 2 cut(s) 62, 82
Hpy188III TCNNGA 4 cut(s) 277, 501, 578, 754
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4IV ACGT 2 cut(s) 522, 661
HpyCH4V TGCA 5 cut(s) 379, 391, 737, 791, 924
HpyF10VI GCNNNNNNNGC 9 cut(s) 96, 120, 156, 172, 187, 343, 352, 385, 682
HpyF3I CTNAG 3 cut(s) 320, 570, 672
HpySE526I ACGT 2 cut(s) 522, 661
Hsp92I GRCGYC 2 cut(s) 50, 424
Hsp92II CATG 2 cut(s) 783, 869
HspAI GCGC 7 cut(s) 112, 137, 175, 196, 226, 424, 477
KasI GGCGCC 1 cut(s) 423
KpnI GGTACC 1 cut(s) 558
KroI GCCGGC 2 cut(s) 114, 162
KroNI GCCGGC 2 cut(s) 116, 164
Ksp22I TGATCA 1 cut(s) 535
KspI CCGCGG 1 cut(s) 210
Kzo9I GATC 4 cut(s) 23, 535, 615, 756
LmnI GCTCC 4 cut(s) 63, 211, 223, 474
Lsp1109I GCAGC 4 cut(s) 121, 171, 375, 952
LweI GCATC 3 cut(s) 162, 177, 583
MabI ACCWGGT 1 cut(s) 813
MaeI CTAG 1 cut(s) 578
MaeII ACGT 2 cut(s) 522, 661
MaeIII GTNAC 1 cut(s) 458
MalI GATC 4 cut(s) 25, 537, 617, 758
MboI GATC 4 cut(s) 23, 535, 615, 756
MboII GAAGA 4 cut(s) 3, 767, 825, 878
MfeI CAATTG 1 cut(s) 215
MhlI GDGCHC 2 cut(s) 321, 494
MluCI AATT 6 cut(s) 64, 104, 215, 451, 484, 693
Mly113I GGCGCC 1 cut(s) 424
MlyI GAGTC 2 cut(s) 341, 503
MmeI TCCRAC 1 cut(s) 105
MroNI GCCGGC 2 cut(s) 114, 162
MslI CAYNNNNRTG 1 cut(s) 543
MspA1I CMGCKG 1 cut(s) 209
MspI CCGG 9 cut(s) 115, 163, 325, 338, 418, 433, 444, 456, 480
MspR9I CCNGG 8 cut(s) 131, 152, 444, 445, 481, 496, 701, 815
MunI CAATTG 1 cut(s) 215
MvaI CCWGG 5 cut(s) 131, 152, 496, 701, 815
MvnI CGCG 4 cut(s) 139, 177, 198, 209
MwoI GCNNNNNNNGC 9 cut(s) 96, 120, 156, 172, 187, 343, 352, 385, 682
NaeI GCCGGC 2 cut(s) 116, 164
NarI GGCGCC 1 cut(s) 424
NciI CCSGG 3 cut(s) 444, 445, 481
NdeI CATATG 1 cut(s) 393
NdeII GATC 4 cut(s) 23, 535, 615, 756
NgoMIV GCCGGC 2 cut(s) 114, 162
NlaIII CATG 2 cut(s) 783, 869
NlaIV GGNNCC 3 cut(s) 143, 425, 556
NmeAIII GCCGAG 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 458
PcsI WCGNNNNNNNCGW 2 cut(s) 74, 291
PdiI GCCGGC 2 cut(s) 116, 164
PfeI GAWTC 2 cut(s) 581, 624
PflFI GACNNNGTC 1 cut(s) 38
PkrI GCNGC 9 cut(s) 101, 136, 161, 168, 208, 304, 390, 423, 942
PleI GAGTC 2 cut(s) 340, 503
PluTI GGCGCC 1 cut(s) 427
PpsI GAGTC 2 cut(s) 340, 503
Ppu21I YACGTR 1 cut(s) 523
Psp6I CCWGG 5 cut(s) 129, 150, 494, 699, 813
PspGI CCWGG 5 cut(s) 129, 150, 494, 699, 813
PspN4I GGNNCC 3 cut(s) 143, 425, 556
PspPI GGNCC 3 cut(s) 97, 240, 498
PsyI GACNNNGTC 1 cut(s) 38
RsaI GTAC 2 cut(s) 521, 556
RsaNI GTAC 2 cut(s) 520, 555
RseI CAYNNNNRTG 1 cut(s) 543
SacII CCGCGG 1 cut(s) 210
SatI GCNGC 9 cut(s) 100, 135, 160, 167, 207, 303, 389, 422, 941
Sau3AI GATC 4 cut(s) 23, 535, 615, 756
Sau96I GGNCC 3 cut(s) 97, 240, 498
SchI GAGTC 2 cut(s) 341, 503
ScrFI CCNGG 8 cut(s) 131, 152, 444, 445, 481, 496, 701, 815
SduI GDGCHC 2 cut(s) 321, 494
SetI ASST 8 cut(s) 500, 525, 535, 664, 678, 819, 908, 950
SexAI ACCWGGT 1 cut(s) 813
SfaNI GCATC 3 cut(s) 162, 177, 583
SfoI GGCGCC 1 cut(s) 425
Sfr303I CCGCGG 1 cut(s) 210
SgrBI CCGCGG 1 cut(s) 210
SinI GGWCC 1 cut(s) 498
SmaI CCCGGG 1 cut(s) 445
SmiMI CAYNNNNRTG 1 cut(s) 543
Sse9I AATT 6 cut(s) 64, 104, 215, 451, 484, 693
SspDI GGCGCC 1 cut(s) 423
SspMI CTAG 1 cut(s) 578
StyD4I CCNGG 8 cut(s) 129, 150, 442, 443, 479, 494, 699, 813
TaaI ACNGT 1 cut(s) 310
TaiI ACGT 2 cut(s) 525, 664
TaqI TCGA 4 cut(s) 42, 185, 411, 488
TasI AATT 6 cut(s) 64, 104, 215, 451, 484, 693
TauI GCSGC 5 cut(s) 102, 169, 209, 305, 424
TfiI GAWTC 2 cut(s) 581, 624
TscAI CASTG 2 cut(s) 568, 744
TseFI GTSAC 1 cut(s) 458
TseI GCWGC 4 cut(s) 134, 159, 388, 940
Tsp45I GTSAC 1 cut(s) 458
TspDTI ATGAA 4 cut(s) 464, 595, 854, 860
TspGWI ACGGA 1 cut(s) 477
TspMI CCCGGG 1 cut(s) 443
TspRI CASTG 2 cut(s) 568, 744
Tth111I GACNNNGTC 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 498
XagI CCTNNNNNAGG 2 cut(s) 128, 149
XapI RAATTY 3 cut(s) 64, 451, 484
XbaI TCTAGA 1 cut(s) 577
XmaI CCCGGG 1 cut(s) 443
XspI CTAG 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.