Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004309

Physical Location & Seq

Genomic Coordinates Forward (+)

23425352 .. 23427408

Gene Structure 2057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G63170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGTCAAGAGAGACGACGACGGAAGCAACGCCTTTGATTTTAACCGACGGAGGAGGAGGAAGGAGATCGGTGAGAAGACAAGGGTTAAGAGAAGCGGCGAGGTTACTAAGACATGCAAGTAGCGGGAGAATGATGATGAGAGAGCCATCGATGCTTGTTCGTGAAGCTGCGGCTGAGCAGCTTGAAGAGAGACAAAGCGATTGGGCTTATTCGAAACCTGTAGTGGTTTTGGATTTCGTTTGGAATCTTGCTTTTGTCGTTGTTGCTACAGCTGTTTTGGTACTTAGCAGCGATGAGAATCCGAATATGCCTCTTAGGGTTTGGATTATTGGGTATGGGTTGCAATGTATGATGCATATGGTTTGTGTTTGTGTTGAGTATCGTAGGAGGAATAGTAGAAGAAGAAGAGATTTGAGTCCAAGATCTAGCTCTTCTTCTTCTTCTTCTTCTTCTTCTATGGATGAAGAAGAAGGTTTGGGTTTGAGTAGAAACTCAGATGAACGTTACTTGGAGCTAGGTCAATTAGAGAATGAAAACAATAGTTTTGCTAAGCATCTAGAATCTGCAAATACGATGATCTCATTTATATGGTGGGTTATTGGATTTTATTGGGTATCTTCTGGTGGTCAAGAGTTAGCACAAGGATCCCCACAGCTTTATTGGTTGTGTATAGTCTTTCTTGGTTTCGATGTGTTCTTTGTTGTTTTCTGCGTTGCATTGGCTTGTGTTATCGGCATTGCTGTTTGCTGCTGCTTGCCTTGCATCATTGCAGTTCTATACGCCGTAGCAGAACAGGAAGGAGCTTCGAAAGAAGACATTGACCAACTTACTAAATTCAAATTCCGAAAGGTTGGTGATACTATGAAACACACTGTTGATGAAGAACAAGGACAAGGAGATTCTGGAGGAGTGATGACTGAATGTGGTACAGATTCACCCGTTGAACATGCTCTTCCTCATGAGGATGCAGAATGCTGCATTTGTCTTTCCGCTTATGAAGACGAGACAGAGCTAAGAGAACTTCCTTGTGGCCACCATTTCCATTGCGGTTGTGTGGATAAATGGCTTTACATAAATGCTACTTGTCCCCTCTGCAAATACAACATCCTCAAGAGTAGCAACTACGAAGAAGGCGAGGAAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031090 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

381

Amino Acids

42.68

Weight (kDa)

4.99

Isoelectric Point (pI)

63.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	324 - 366	4.8e-14	Ring finger domain
zf-RING_11	PF17123	324 - 352	5.1e-08	RING-like zinc finger
zf-rbx1	PF12678	324 - 366	1.6e-06	RING-H2 zinc finger domain
zf-C3HC4	PF00097	325 - 365	8.5e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12760 AT1G12760 AT1G63170
fragaria_vesca	FvH4_5g01740 FvH4_5g01740 FvH4_5g01740 FvH4_5g01740
malus_domestica	MD00G1110500.v1.1 MD04G1044500.v1.1 MD04G1064900.v1.1 MD10G1187400.v1.1 MD11G1252000.v1.1 MD13G1133300.v1.1
prunus_persica	Prupe.5G092900_v2.0.a1 Prupe.5G092900_v2.0.a1 Prupe.5G092900_v2.0.a1
pyrus_communis	pycom04g05870 pycom06g07380
rosa_chinensis	RchiOBHm_Chr7g0198981
rosa_laevigata	RLG00000003827
rosa_multiflora	Rmu_co8298497.1_g000001 Rmu_sc0006266.1_g000024 Rmu_sc0007328.1_g000010
rosa_roxburghii	Rroxscaffold_3G00257250
rosa_rugosa	Rorug07G0051800 Rorug07G0051900 Rorug07G0051900
rosa_samantha	Rh7AG174900 Rh7BG178100 Rh7CG184100 Rh7DG177500
rosa_wichuraiana	Rw7G015340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	95, 123, 170, 990, 1047
AclI	AACGTT	1 cut(s)	502
AclWI	GGATC	2 cut(s)	639, 652
AcoI	YGGCCR	1 cut(s)	1030
AcsI	RAATTY	2 cut(s)	833, 839
AfaI	GTAC	2 cut(s)	282, 928
AgsI	TTSAA	3 cut(s)	185, 838, 944
AluBI	AGCT	8 cut(s)	167, 181, 272, 429, 514, 655, 803, 1012
AluI	AGCT	8 cut(s)	167, 181, 272, 429, 514, 655, 803, 1012
Alw26I	GTCTC	3 cut(s)	5, 184, 998
AlwI	GGATC	2 cut(s)	639, 652
AoxI	GGCC	1 cut(s)	1030
ApeKI	GCWGC	6 cut(s)	167, 178, 288, 747, 750, 975
ApoI	RAATTY	2 cut(s)	833, 839
AsuHPI	GGTGA	3 cut(s)	82, 866, 927
AsuII	TTCGAA	2 cut(s)	212, 806
BalI	TGGCCA	1 cut(s)	1032
BamHI	GGATCC	1 cut(s)	644
BbsI	GAAGAC	3 cut(s)	82, 819, 1005
BbvI	GCAGC	6 cut(s)	154, 190, 300, 734, 737, 962
BccI	CCATC	1 cut(s)	154
BceAI	ACGGC	1 cut(s)	767
BcoDI	GTCTC	3 cut(s)	5, 184, 998
BfaI	CTAG	4 cut(s)	426, 515, 557, 1144
BfmI	CTRYAG	2 cut(s)	219, 267
BglII	AGATCT	1 cut(s)	422
BisI	GCNGC	8 cut(s)	96, 168, 171, 179, 289, 748, 751, 976
BlpI	GCTNAGC	2 cut(s)	174, 549
BlsI	GCNGC	8 cut(s)	97, 169, 172, 180, 290, 749, 752, 977
BmiI	GGNNCC	1 cut(s)	646
BmsI	GCATC	5 cut(s)	141, 342, 562, 771, 955
BpiI	GAAGAC	3 cut(s)	82, 819, 1005
BpmI	CTGGAG	1 cut(s)	924
Bpu1102I	GCTNAGC	2 cut(s)	174, 549
Bpu14I	TTCGAA	2 cut(s)	212, 806
BpuEI	CTTGAG	1 cut(s)	1094
Bsa29I	ATCGAT	1 cut(s)	149
BsaBI	GATNNNNATC	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bse3DI	GCAATG	4 cut(s)	350, 735, 765, 1042
Bse8I	GATNNNNATC	1 cut(s)	297
BseCI	ATCGAT	1 cut(s)	149
BseGI	GGATG	3 cut(s)	466, 970, 1104
BseJI	GATNNNNATC	1 cut(s)	297
BseMI	GCAATG	4 cut(s)	350, 735, 765, 1042
BseMII	CTCAG	2 cut(s)	165, 507
BseRI	GAGGAG	3 cut(s)	66, 69, 921
BseXI	GCAGC	6 cut(s)	154, 190, 300, 734, 737, 962
BshFI	GGCC	1 cut(s)	1032
BshVI	ATCGAT	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	1071
BsmAI	GTCTC	3 cut(s)	5, 184, 998
BsmBI	CGTCTC	1 cut(s)	5
BsmFI	GGGAC	1 cut(s)	1071
BsmI	GAATGC	1 cut(s)	977
BsnI	GGCC	1 cut(s)	1032
Bsp119I	TTCGAA	2 cut(s)	212, 806
Bsp143I	GATC	4 cut(s)	65, 422, 576, 644
Bsp1720I	GCTNAGC	2 cut(s)	174, 549
BspACI	CCGC	5 cut(s)	95, 123, 170, 990, 1047
BspANI	GGCC	1 cut(s)	1032
BspCNI	CTCAG	2 cut(s)	166, 506
BspDI	ATCGAT	1 cut(s)	149
BspHI	TCATGA	1 cut(s)	958
BspLI	GGNNCC	1 cut(s)	646
BspPI	GGATC	2 cut(s)	639, 652
BspQI	GCTCTTC	2 cut(s)	436, 957
BspT104I	TTCGAA	2 cut(s)	212, 806
BsrDI	GCAATG	4 cut(s)	350, 735, 765, 1042
BssMI	GATC	4 cut(s)	65, 422, 576, 644
Bst4CI	ACNGT	1 cut(s)	874
Bst6I	CTCTTC	4 cut(s)	180, 400, 436, 957
BstBI	TTCGAA	2 cut(s)	212, 806
BstC8I	GCNNGC	1 cut(s)	755
BstDEI	CTNAG	7 cut(s)	107, 174, 284, 314, 493, 549, 1013
BstF5I	GGATG	3 cut(s)	466, 970, 1104
BstKTI	GATC	4 cut(s)	68, 425, 579, 647
BstMAI	GTCTC	3 cut(s)	5, 184, 998
BstMBI	GATC	4 cut(s)	65, 422, 576, 644
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 759
BstNSI	RCATGY	2 cut(s)	116, 950
BstSFI	CTRYAG	2 cut(s)	219, 267
BstV1I	GCAGC	6 cut(s)	154, 190, 300, 734, 737, 962
BstV2I	GAAGAC	3 cut(s)	82, 819, 1005
BstX2I	RGATCY	2 cut(s)	422, 644
BstYI	RGATCY	2 cut(s)	422, 644
Bsu15I	ATCGAT	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	1032
BsuTUI	ATCGAT	1 cut(s)	149
BtgZI	GCGATG	1 cut(s)	306
BtsCI	GGATG	3 cut(s)	466, 970, 1104
BtsIMutI	CAGTG	1 cut(s)	870
Cac8I	GCNNGC	1 cut(s)	755
CciI	TCATGA	1 cut(s)	958
ClaI	ATCGAT	1 cut(s)	149
Csp6I	GTAC	2 cut(s)	281, 927
CviAII	CATG	3 cut(s)	113, 947, 959
CviQI	GTAC	2 cut(s)	281, 927
DdeI	CTNAG	7 cut(s)	107, 174, 284, 314, 493, 549, 1013
DpnI	GATC	4 cut(s)	67, 424, 578, 646
DpnII	GATC	4 cut(s)	65, 422, 576, 644
EaeI	YGGCCR	1 cut(s)	1030
Eam1104I	CTCTTC	4 cut(s)	180, 400, 436, 957
EarI	CTCTTC	4 cut(s)	180, 400, 436, 957
EcoT22I	ATGCAT	1 cut(s)	357
Esp3I	CGTCTC	1 cut(s)	5
FaeI	CATG	3 cut(s)	116, 950, 962
FaqI	GGGAC	1 cut(s)	1071
FatI	CATG	3 cut(s)	112, 946, 958
FauI	CCCGC	1 cut(s)	116
FauNDI	CATATG	1 cut(s)	357
Fnu4HI	GCNGC	8 cut(s)	96, 168, 171, 179, 289, 748, 751, 976
FokI	GGATG	3 cut(s)	473, 977, 1091
Fsp4HI	GCNGC	8 cut(s)	96, 168, 171, 179, 289, 748, 751, 976
FspBI	CTAG	4 cut(s)	426, 515, 557, 1144
GluI	GCNGC	8 cut(s)	96, 168, 171, 179, 289, 748, 751, 976
GsuI	CTGGAG	1 cut(s)	924
HaeIII	GGCC	1 cut(s)	1032
Hin1II	CATG	3 cut(s)	116, 950, 962
HinfI	GANTC	6 cut(s)	244, 298, 415, 560, 899, 932
HphI	GGTGA	3 cut(s)	82, 866, 927
Hpy188I	TCNGA	3 cut(s)	303, 496, 845
Hpy188III	TCNNGA	7 cut(s)	6, 161, 557, 629, 903, 959, 1111
Hpy99I	CGWCG	3 cut(s)	19, 22, 50
HpyAV	CCTTC	4 cut(s)	54, 464, 791, 1124
HpyCH4III	ACNGT	1 cut(s)	874
HpyCH4IV	ACGT	1 cut(s)	502
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 759
HpyF3I	CTNAG	7 cut(s)	107, 174, 284, 314, 493, 549, 1013
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	3 cut(s)	116, 950, 962
Kzo9I	GATC	4 cut(s)	65, 422, 576, 644
LguI	GCTCTTC	2 cut(s)	436, 957
LmnI	GCTCC	2 cut(s)	511, 800
LpnPI	CCDG	4 cut(s)	231, 606, 779, 888
Lsp1109I	GCAGC	6 cut(s)	154, 190, 300, 734, 737, 962
LweI	GCATC	5 cut(s)	141, 342, 562, 771, 955
MaeI	CTAG	4 cut(s)	426, 515, 557, 1144
MaeII	ACGT	1 cut(s)	502
MaeIII	GTNAC	2 cut(s)	102, 503
MalI	GATC	4 cut(s)	67, 424, 578, 646
MboI	GATC	4 cut(s)	65, 422, 576, 644
MflI	RGATCY	2 cut(s)	422, 644
MlsI	TGGCCA	1 cut(s)	1032
MluCI	AATT	3 cut(s)	521, 833, 839
MluNI	TGGCCA	1 cut(s)	1032
MlyI	GAGTC	1 cut(s)	424
Mox20I	TGGCCA	1 cut(s)	1032
Mph1103I	ATGCAT	1 cut(s)	357
MscI	TGGCCA	1 cut(s)	1032
MseI	TTAA	2 cut(s)	41, 86
MslI	CAYNNNNRTG	2 cut(s)	586, 963
Msp20I	TGGCCA	1 cut(s)	1032
MspA1I	CMGCKG	1 cut(s)	272
Mva1269I	GAATGC	1 cut(s)	977
MwoI	GCNNNNNNNGC	2 cut(s)	151, 759
NdeI	CATATG	1 cut(s)	357
NdeII	GATC	4 cut(s)	65, 422, 576, 644
NlaIII	CATG	3 cut(s)	116, 950, 962
NlaIV	GGNNCC	1 cut(s)	646
NsiI	ATGCAT	1 cut(s)	357
NspI	RCATGY	2 cut(s)	116, 950
NspV	TTCGAA	2 cut(s)	212, 806
PagI	TCATGA	1 cut(s)	958
PciSI	GCTCTTC	2 cut(s)	436, 957
PcsI	WCGNNNNNNNCGW	1 cut(s)	1131
PctI	GAATGC	1 cut(s)	977
PfeI	GAWTC	5 cut(s)	244, 298, 560, 899, 932
PkrI	GCNGC	8 cut(s)	97, 169, 172, 180, 290, 749, 752, 977
PleI	GAGTC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	423
Psp1406I	AACGTT	1 cut(s)	502
PspN4I	GGNNCC	1 cut(s)	646
PsuI	RGATCY	2 cut(s)	422, 644
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	2 cut(s)	282, 928
RsaNI	GTAC	2 cut(s)	281, 927
RseI	CAYNNNNRTG	2 cut(s)	586, 963
SapI	GCTCTTC	2 cut(s)	436, 957
SaqAI	TTAA	2 cut(s)	41, 86
SatI	GCNGC	8 cut(s)	96, 168, 171, 179, 289, 748, 751, 976
Sau3AI	GATC	4 cut(s)	65, 422, 576, 644
SchI	GAGTC	1 cut(s)	424
SfaNI	GCATC	5 cut(s)	141, 342, 562, 771, 955
SfcI	CTRYAG	2 cut(s)	219, 267
SfuI	TTCGAA	2 cut(s)	212, 806
SmiMI	CAYNNNNRTG	2 cut(s)	586, 963
SmlI	CTYRAG	1 cut(s)	1109
SmoI	CTYRAG	1 cut(s)	1109
Sse9I	AATT	3 cut(s)	521, 833, 839
SsiI	CCGC	5 cut(s)	95, 123, 170, 990, 1047
SspMI	CTAG	4 cut(s)	426, 515, 557, 1144
TaaI	ACNGT	1 cut(s)	874
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	4 cut(s)	149, 212, 687, 806
TasI	AATT	3 cut(s)	521, 833, 839
TauI	GCSGC	2 cut(s)	98, 173
TfiI	GAWTC	5 cut(s)	244, 298, 560, 899, 932
Tru1I	TTAA	2 cut(s)	41, 86
Tru9I	TTAA	2 cut(s)	41, 86
TscAI	CASTG	1 cut(s)	877
TseI	GCWGC	6 cut(s)	167, 178, 288, 747, 750, 975
TspDTI	ATGAA	6 cut(s)	477, 513, 546, 878, 894, 1011
TspGWI	ACGGA	2 cut(s)	35, 63
TspRI	CASTG	1 cut(s)	877
XapI	RAATTY	2 cut(s)	833, 839
XbaI	TCTAGA	1 cut(s)	556
XceI	RCATGY	2 cut(s)	116, 950
XcmI	CCANNNNNNNNNTGG	1 cut(s)	657
XspI	CTAG	4 cut(s)	426, 515, 557, 1144
Zsp2I	ATGCAT	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.