Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8298497.1

Orthogroup ID

OG0004309

Physical Location & Seq

Genomic Coordinates Reverse (-)

211 .. 792

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8298497.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atggcttcttcttcacccaaccgatccgccgaggacatcgtcgatacgacgccgttgctccgaaattcgggcgggtcgtccgacgagagcaactcgggccgccagttagtgcgccggcagagcctccgccaggccgcgcggttcctccgccaggccagcagccggcggctgatgcgcgagccgtcgatgctggtgcgcgagaccgccgcggagcaattggaggagcgccagagcgattgggcctactccaaacccgtcgtcgttttggacatcatctggaacttcgctttcgtcgtcgtggcggcgacggttctggtgctcagccggttagagtcgccggatatgccgttgaggctttggattgtgggctacgctctgcaatgcgtgctgcatatggtttgcgtttgtgtcgagttccggcggcgccagaaccggcggtttcccgggatgaattccggtgacggagggattgggagcgccgggaattcgagccccaggtccagagacgactcgtcgcagtacgtgtctttagctgatcacttgaatgatgagggtaccaggtacgttttgggaaagctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031090 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

193

Amino Acids

21.56

Weight (kDa)

9.29

Isoelectric Point (pI)

69.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12760 AT1G12760 AT1G63170
fragaria_vesca	FvH4_5g01740 FvH4_5g01740 FvH4_5g01740 FvH4_5g01740
malus_domestica	MD00G1110500.v1.1 MD04G1044500.v1.1 MD04G1064900.v1.1 MD10G1187400.v1.1 MD11G1252000.v1.1 MD13G1133300.v1.1
prunus_persica	Prupe.5G092900_v2.0.a1 Prupe.5G092900_v2.0.a1 Prupe.5G092900_v2.0.a1
pyrus_communis	pycom04g05870 pycom06g07380
rosa_chinensis	RchiOBHm_Chr7g0198981
rosa_laevigata	RLG00000003827
rosa_multiflora	Rmu_co8298497.1_g000001 Rmu_sc0006266.1_g000024 Rmu_sc0007328.1_g000010
rosa_roxburghii	Rroxscaffold_3G00257250
rosa_rugosa	Rorug07G0051800 Rorug07G0051900 Rorug07G0051900
rosa_samantha	Rh7AG174900 Rh7BG178100 Rh7CG184100 Rh7DG177500
rosa_wichuraiana	Rw7G015340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	554
AccB1I	GGYRCC	2 cut(s)	423, 554
AccII	CGCG	5 cut(s)	137, 139, 177, 198, 209
AclWI	GGATC	1 cut(s)	18
AcsI	RAATTY	3 cut(s)	64, 451, 484
AcyI	GRCGYC	2 cut(s)	50, 424
AfaI	GTAC	3 cut(s)	521, 556, 563
AfiI	CCNNNNNNNGG	4 cut(s)	67, 130, 151, 162
AflIII	ACRYGT	1 cut(s)	522
AgsI	TTSAA	1 cut(s)	544
AhdI	GACNNNNNGTC	1 cut(s)	511
AjnI	CCWGG	4 cut(s)	129, 150, 494, 557
AluBI	AGCT	2 cut(s)	533, 577
AluI	AGCT	2 cut(s)	533, 577
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	2 cut(s)	194, 498
AlwI	GGATC	1 cut(s)	18
Ama87I	CYCGRG	2 cut(s)	94, 443
AoxI	GGCC	4 cut(s)	97, 132, 153, 240
ApeKI	GCWGC	2 cut(s)	159, 388
ApoI	RAATTY	3 cut(s)	64, 451, 484
ArsI	GACNNNNNNTTYG	2 cut(s)	243, 275
Asp718I	GGTACC	1 cut(s)	554
AspLEI	GCGC	7 cut(s)	114, 139, 177, 198, 228, 426, 479
AspS9I	GGNCC	3 cut(s)	97, 240, 498
AsuC2I	CCSGG	3 cut(s)	444, 445, 481
AsuHPI	GGTGA	2 cut(s)	6, 470
AvaI	CYCGRG	2 cut(s)	94, 443
AvaII	GGWCC	1 cut(s)	498
BanI	GGYRCC	2 cut(s)	423, 554
BanII	GRGCYC	1 cut(s)	494
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	2 cut(s)	171, 375
BceAI	ACGGC	3 cut(s)	37, 166, 331
BcgI	CGANNNNNNTGC	4 cut(s)	37, 71, 175, 209
BciT130I	CCWGG	4 cut(s)	131, 152, 496, 559
BclI	TGATCA	1 cut(s)	535
BcnI	CCSGG	3 cut(s)	444, 445, 481
BcoDI	GTCTC	2 cut(s)	194, 498
BfoI	RGCGCY	3 cut(s)	229, 427, 480
BglI	GCCNNNNNGGC	1 cut(s)	352
BisI	GCNGC	8 cut(s)	100, 135, 160, 167, 207, 303, 389, 422
BlpI	GCTNAGC	1 cut(s)	320
BlsI	GCNGC	8 cut(s)	101, 136, 161, 168, 208, 304, 390, 423
Bme1390I	CCNGG	7 cut(s)	131, 152, 444, 445, 481, 496, 559
Bme18I	GGWCC	1 cut(s)	498
BmeRI	GACNNNNNGTC	1 cut(s)	511
BmeT110I	CYCGRG	2 cut(s)	94, 443
BmgT120I	GGNCC	3 cut(s)	97, 240, 498
BmiI	GGNNCC	3 cut(s)	143, 425, 556
BmrFI	CCNGG	7 cut(s)	131, 152, 444, 445, 481, 496, 559
BmsI	GCATC	2 cut(s)	162, 177
BplI	GAGNNNNNCTC	2 cut(s)	77, 109
Bpu1102I	GCTNAGC	1 cut(s)	320
BpuMI	CCSGG	3 cut(s)	444, 445, 481
BsaAI	YACGTR	1 cut(s)	523
BsaHI	GRCGYC	2 cut(s)	50, 424
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	4 cut(s)	30, 207, 443, 494
BsaWI	WCCGGW	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	4 cut(s)	67, 130, 151, 162
Bse118I	RCCGGY	4 cut(s)	114, 162, 324, 432
Bse1I	ACTGG	1 cut(s)	103
Bse3DI	GCAATG	1 cut(s)	386
BseBI	CCWGG	4 cut(s)	131, 152, 496, 559
BseDI	CCNNGG	4 cut(s)	30, 207, 443, 494
BseGI	GGATG	1 cut(s)	453
BseLI	CCNNNNNNNGG	4 cut(s)	67, 130, 151, 162
BseMI	GCAATG	1 cut(s)	386
BseMII	CTCAG	1 cut(s)	334
BseNI	ACTGG	1 cut(s)	103
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	2 cut(s)	171, 375
Bsh1236I	CGCG	5 cut(s)	137, 139, 177, 198, 209
BshFI	GGCC	4 cut(s)	99, 134, 155, 242
BshNI	GGYRCC	2 cut(s)	423, 554
BsiHKAI	GWGCWC	1 cut(s)	321
BsiHKCI	CYCGRG	2 cut(s)	94, 443
BsiSI	CCGG	9 cut(s)	115, 163, 325, 338, 418, 433, 444, 456, 480
BslI	CCNNNNNNNGG	4 cut(s)	67, 130, 151, 162
BsmAI	GTCTC	2 cut(s)	194, 498
BsmBI	CGTCTC	1 cut(s)	498
BsnI	GGCC	4 cut(s)	99, 134, 155, 242
Bso31I	GGTCTC	1 cut(s)	194
BsoBI	CYCGRG	2 cut(s)	94, 443
Bsp1286I	GDGCHC	2 cut(s)	321, 494
Bsp143I	GATC	2 cut(s)	23, 535
Bsp1720I	GCTNAGC	1 cut(s)	320
BspANI	GGCC	4 cut(s)	99, 134, 155, 242
BspCNI	CTCAG	1 cut(s)	333
BspFNI	CGCG	5 cut(s)	137, 139, 177, 198, 209
BspLI	GGNNCC	3 cut(s)	143, 425, 556
BspPI	GGATC	1 cut(s)	18
BspT107I	GGYRCC	2 cut(s)	423, 554
BspTNI	GGTCTC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	386
BsrFI	RCCGGY	4 cut(s)	114, 162, 324, 432
BsrI	ACTGG	1 cut(s)	103
BssAI	RCCGGY	4 cut(s)	114, 162, 324, 432
BssECI	CCNNGG	4 cut(s)	30, 207, 443, 494
BssMI	GATC	2 cut(s)	23, 535
BssNI	GRCGYC	2 cut(s)	50, 424
Bst2UI	CCWGG	4 cut(s)	131, 152, 496, 559
Bst4CI	ACNGT	1 cut(s)	310
BstACI	GRCGYC	2 cut(s)	50, 424
BstAPI	GCANNNNNTGC	1 cut(s)	385
BstBAI	YACGTR	1 cut(s)	523
BstC8I	GCNNGC	5 cut(s)	116, 157, 164, 179, 386
BstDEI	CTNAG	1 cut(s)	320
BstDSI	CCRYGG	1 cut(s)	207
BstENI	CCTNNNNNAGG	2 cut(s)	128, 149
BstF5I	GGATG	1 cut(s)	453
BstFNI	CGCG	5 cut(s)	137, 139, 177, 198, 209
BstH2I	RGCGCY	3 cut(s)	229, 427, 480
BstHHI	GCGC	7 cut(s)	114, 139, 177, 198, 228, 426, 479
BstKTI	GATC	2 cut(s)	26, 538
BstMAI	GTCTC	2 cut(s)	194, 498
BstMBI	GATC	2 cut(s)	23, 535
BstMWI	GCNNNNNNNGC	8 cut(s)	96, 120, 156, 172, 187, 343, 352, 385
BstNI	CCWGG	4 cut(s)	131, 152, 496, 559
BstSCI	CCNGG	7 cut(s)	129, 150, 442, 443, 479, 494, 557
BstUI	CGCG	5 cut(s)	137, 139, 177, 198, 209
BstV1I	GCAGC	2 cut(s)	171, 375
BsuRI	GGCC	4 cut(s)	99, 134, 155, 242
BtgI	CCRYGG	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	453
Cac8I	GCNNGC	5 cut(s)	116, 157, 164, 179, 386
CfoI	GCGC	7 cut(s)	114, 139, 177, 198, 228, 426, 479
Cfr10I	RCCGGY	4 cut(s)	114, 162, 324, 432
Cfr13I	GGNCC	3 cut(s)	97, 240, 498
Cfr42I	CCGCGG	1 cut(s)	210
Cfr9I	CCCGGG	1 cut(s)	443
CseI	GACGC	1 cut(s)	58
CsiI	ACCWGGT	1 cut(s)	557
Csp6I	GTAC	3 cut(s)	520, 555, 562
CviQI	GTAC	3 cut(s)	520, 555, 562
DdeI	CTNAG	1 cut(s)	320
DinI	GGCGCC	1 cut(s)	425
DpnI	GATC	2 cut(s)	25, 537
DpnII	GATC	2 cut(s)	23, 535
DriI	GACNNNNNGTC	1 cut(s)	511
Eam1105I	GACNNNNNGTC	1 cut(s)	511
EciI	GGCGGA	3 cut(s)	16, 116, 137
Eco24I	GRGCYC	1 cut(s)	494
Eco31I	GGTCTC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	498
Eco88I	CYCGRG	2 cut(s)	94, 443
EcoNI	CCTNNNNNAGG	2 cut(s)	128, 149
EcoRI	GAATTC	2 cut(s)	451, 484
EcoRII	CCWGG	4 cut(s)	129, 150, 494, 557
EcoT38I	GRGCYC	1 cut(s)	494
EgeI	GGCGCC	1 cut(s)	425
EheI	GGCGCC	1 cut(s)	425
Esp3I	CGTCTC	1 cut(s)	498
FaiI	YATR	3 cut(s)	344, 393, 395
FauI	CCCGC	1 cut(s)	65
FauNDI	CATATG	1 cut(s)	393
FbaI	TGATCA	1 cut(s)	535
Fnu4HI	GCNGC	8 cut(s)	100, 135, 160, 167, 207, 303, 389, 422
FokI	GGATG	1 cut(s)	460
FriOI	GRGCYC	1 cut(s)	494
Fsp4HI	GCNGC	8 cut(s)	100, 135, 160, 167, 207, 303, 389, 422
GlaI	GCGC	7 cut(s)	113, 138, 176, 197, 227, 425, 478
GluI	GCNGC	8 cut(s)	100, 135, 160, 167, 207, 303, 389, 422
HaeII	RGCGCY	3 cut(s)	229, 427, 480
HaeIII	GGCC	4 cut(s)	99, 134, 155, 242
HapII	CCGG	9 cut(s)	115, 163, 325, 338, 418, 433, 444, 456, 480
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	7 cut(s)	114, 139, 177, 198, 228, 426, 479
Hin1I	GRCGYC	2 cut(s)	50, 424
Hin6I	GCGC	7 cut(s)	112, 137, 175, 196, 226, 424, 477
HinP1I	GCGC	7 cut(s)	112, 137, 175, 196, 226, 424, 477
HindIII	AAGCTT	1 cut(s)	575
HinfI	GANTC	2 cut(s)	332, 509
HpaII	CCGG	9 cut(s)	115, 163, 325, 338, 418, 433, 444, 456, 480
HphI	GGTGA	2 cut(s)	6, 470
Hpy188I	TCNGA	2 cut(s)	62, 82
Hpy188III	TCNNGA	2 cut(s)	277, 501
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4IV	ACGT	2 cut(s)	522, 564
HpyCH4V	TGCA	2 cut(s)	379, 391
HpyF10VI	GCNNNNNNNGC	8 cut(s)	96, 120, 156, 172, 187, 343, 352, 385
HpyF3I	CTNAG	1 cut(s)	320
HpySE526I	ACGT	2 cut(s)	522, 564
Hsp92I	GRCGYC	2 cut(s)	50, 424
HspAI	GCGC	7 cut(s)	112, 137, 175, 196, 226, 424, 477
KasI	GGCGCC	1 cut(s)	423
KpnI	GGTACC	1 cut(s)	558
KroI	GCCGGC	2 cut(s)	114, 162
KroNI	GCCGGC	2 cut(s)	116, 164
Ksp22I	TGATCA	1 cut(s)	535
KspI	CCGCGG	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	23, 535
LmnI	GCTCC	4 cut(s)	63, 211, 223, 474
Lsp1109I	GCAGC	2 cut(s)	171, 375
LweI	GCATC	2 cut(s)	162, 177
MabI	ACCWGGT	1 cut(s)	557
MaeII	ACGT	2 cut(s)	522, 564
MaeIII	GTNAC	1 cut(s)	458
MalI	GATC	2 cut(s)	25, 537
MboI	GATC	2 cut(s)	23, 535
MboII	GAAGA	1 cut(s)	3
MfeI	CAATTG	1 cut(s)	215
MhlI	GDGCHC	2 cut(s)	321, 494
MluCI	AATT	4 cut(s)	64, 215, 451, 484
Mly113I	GGCGCC	1 cut(s)	424
MlyI	GAGTC	2 cut(s)	341, 503
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	7 cut(s)	25, 134, 155, 214, 345, 458, 544
MroNI	GCCGGC	2 cut(s)	114, 162
MslI	CAYNNNNRTG	1 cut(s)	543
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	9 cut(s)	115, 163, 325, 338, 418, 433, 444, 456, 480
MspR9I	CCNGG	7 cut(s)	131, 152, 444, 445, 481, 496, 559
MunI	CAATTG	1 cut(s)	215
MvaI	CCWGG	4 cut(s)	131, 152, 496, 559
MvnI	CGCG	5 cut(s)	137, 139, 177, 198, 209
MwoI	GCNNNNNNNGC	8 cut(s)	96, 120, 156, 172, 187, 343, 352, 385
NaeI	GCCGGC	2 cut(s)	116, 164
NarI	GGCGCC	1 cut(s)	424
NciI	CCSGG	3 cut(s)	444, 445, 481
NdeI	CATATG	1 cut(s)	393
NdeII	GATC	2 cut(s)	23, 535
NgoMIV	GCCGGC	2 cut(s)	114, 162
NlaIV	GGNNCC	3 cut(s)	143, 425, 556
NmeAIII	GCCGAG	1 cut(s)	55
NmuCI	GTSAC	1 cut(s)	458
PcsI	WCGNNNNNNNCGW	2 cut(s)	74, 291
PdiI	GCCGGC	2 cut(s)	116, 164
PflFI	GACNNNGTC	1 cut(s)	38
PkrI	GCNGC	8 cut(s)	101, 136, 161, 168, 208, 304, 390, 423
PleI	GAGTC	2 cut(s)	340, 503
PluTI	GGCGCC	1 cut(s)	427
PpsI	GAGTC	2 cut(s)	340, 503
Ppu21I	YACGTR	1 cut(s)	523
Psp6I	CCWGG	4 cut(s)	129, 150, 494, 557
PspGI	CCWGG	4 cut(s)	129, 150, 494, 557
PspN4I	GGNNCC	3 cut(s)	143, 425, 556
PspPI	GGNCC	3 cut(s)	97, 240, 498
PsyI	GACNNNGTC	1 cut(s)	38
RsaI	GTAC	3 cut(s)	521, 556, 563
RsaNI	GTAC	3 cut(s)	520, 555, 562
RseI	CAYNNNNRTG	1 cut(s)	543
SacII	CCGCGG	1 cut(s)	210
SatI	GCNGC	8 cut(s)	100, 135, 160, 167, 207, 303, 389, 422
Sau3AI	GATC	2 cut(s)	23, 535
Sau96I	GGNCC	3 cut(s)	97, 240, 498
SchI	GAGTC	2 cut(s)	341, 503
ScrFI	CCNGG	7 cut(s)	131, 152, 444, 445, 481, 496, 559
SduI	GDGCHC	2 cut(s)	321, 494
SetI	ASST	6 cut(s)	500, 525, 535, 563, 567, 579
SexAI	ACCWGGT	1 cut(s)	557
SfaNI	GCATC	2 cut(s)	162, 177
SfoI	GGCGCC	1 cut(s)	425
Sfr303I	CCGCGG	1 cut(s)	210
SgrBI	CCGCGG	1 cut(s)	210
SinI	GGWCC	1 cut(s)	498
SmaI	CCCGGG	1 cut(s)	445
SmiMI	CAYNNNNRTG	1 cut(s)	543
Sse9I	AATT	4 cut(s)	64, 215, 451, 484
SspDI	GGCGCC	1 cut(s)	423
StyD4I	CCNGG	7 cut(s)	129, 150, 442, 443, 479, 494, 557
TaaI	ACNGT	1 cut(s)	310
TaiI	ACGT	2 cut(s)	525, 567
TaqI	TCGA	4 cut(s)	42, 185, 411, 488
TasI	AATT	4 cut(s)	64, 215, 451, 484
TauI	GCSGC	6 cut(s)	102, 137, 169, 209, 305, 424
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	2 cut(s)	159, 388
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	1 cut(s)	464
TspGWI	ACGGA	1 cut(s)	477
TspMI	CCCGGG	1 cut(s)	443
Tth111I	GACNNNGTC	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	498
XagI	CCTNNNNNAGG	2 cut(s)	128, 149
XapI	RAATTY	3 cut(s)	64, 451, 484
XcmI	CCANNNNNNNNNTGG	1 cut(s)	565
XmaI	CCCGGG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.