Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004309

Physical Location & Seq

Genomic Coordinates Forward (+)

51633386 .. 51636977

Gene Structure 3592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00257250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCTTCTTCTTCACCCAACCGATCCGCCGAGGATATCGTCGATACGACGCCGTTGCTCCGAAATTCGGGCGGGTCGTCCGACGAGAGCAACTCGGGCCGCCAATTAGTGCGCCGGCAGAGCCTCCGCCAGGCCGCGCGGTTCCTTCGCCAGGCCAGCAGCCGGCGGCTGATGCGCGAGCCGTCGATGCTGGTGCGCGAGACCGCCGCGGAGCAATTGGAGGAGCGCCAGAGCGATTGGGCCTACTCCAAACCCGTCGTCGTTTTGGACATCATCTGGAACTTCGCTTTCGTCGTCGTGGCGGCTACGGTTCTGGTGCTCAGCCGGTTAGAGTCGCCGGATATGCCGTTGAGGCTTTGGATTGTGGGCTACGCTCTGCAATGCGTGCTGCATATGGTCTGTGTTTGTGTCGAGTTCCGGCGGCGCCAGAACCGGCGGTTTCCCGGGATGAATTCCGGTGACGGAGGGATTGGGAGCGCCGGGAATTCGAGCCCCAGGTCCAGAGACGACTCGTCGCAGTACGTGTCTTTAGCTGATCACTTGAATGAGGAGGGTACCAGCAGTGTTGCTAAGCATCTAGAATCGGCAAATACAATGTTTTCGTTCATCTGGTGGATCATTGGATTCTACTGGGTATCAGCAGGCGGGCAATCTTTGGCACGTGCCTCCCCTCAGCTTTACTGGCTTTGTATAATTTTCCTGGGTTTTGATGTGTTTTTTGTCGTTTTCTGTGTTGCACTGGCTTGTATCATCGGGATCGCTGTTTGTTGCTGTCTTCCATGTATTATTGCACTTTTATACGCCGTGGCAGACCAGGATGGTGCATCTAAGGAAGATATTGAACAATTATCAAAATTCAAATTCCGACGAGTTAGTAATGAGAAAGTTGCAGGTGATGCACAAGGACCTCATGGAGGAGTAATGACTGAATGTGGAACAGATTCACCCATTGAGCATGTTCTTTCACCAGAAGATGCGGAGTGTTGCATCTGCCTCTCTTCTTATGATGATGGCGTGGAGCTGAGGCAACTTCCTTGTGGTCACCATTTTCACTGTTCCTGCATCGATAAGTGGCTTTTCATTAATGCTACTTGTCCTCTCTGCAAGTACAATATTTTGAAGAGTAGCAGCAATGATCAAGGCGAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031090 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

383

Amino Acids

42.38

Weight (kDa)

5.67

Isoelectric Point (pI)

65.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	326 - 369	1.1e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	327 - 369	4.2e-14	Ring finger domain
zf-RING_11	PF17123	327 - 355	1.4e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	327 - 368	5.1e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	328 - 368	8.6e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12760 AT1G12760 AT1G63170
fragaria_vesca	FvH4_5g01740 FvH4_5g01740 FvH4_5g01740 FvH4_5g01740
malus_domestica	MD00G1110500.v1.1 MD04G1044500.v1.1 MD04G1064900.v1.1 MD10G1187400.v1.1 MD11G1252000.v1.1 MD13G1133300.v1.1
prunus_persica	Prupe.5G092900_v2.0.a1 Prupe.5G092900_v2.0.a1 Prupe.5G092900_v2.0.a1
pyrus_communis	pycom04g05870 pycom06g07380
rosa_chinensis	RchiOBHm_Chr7g0198981
rosa_laevigata	RLG00000003827
rosa_multiflora	Rmu_co8298497.1_g000001 Rmu_sc0006266.1_g000024 Rmu_sc0007328.1_g000010
rosa_roxburghii	Rroxscaffold_3G00257250
rosa_rugosa	Rorug07G0051800 Rorug07G0051900 Rorug07G0051900
rosa_samantha	Rh7AG174900 Rh7BG178100 Rh7CG184100 Rh7DG177500
rosa_wichuraiana	Rw7G015340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	881
Acc36I	ACCTGC	1 cut(s)	881
Acc65I	GGTACC	1 cut(s)	554
AccB1I	GGYRCC	2 cut(s)	423, 554
AccII	CGCG	5 cut(s)	137, 139, 177, 198, 209
AclWI	GGATC	3 cut(s)	18, 623, 764
AcsI	RAATTY	5 cut(s)	64, 451, 484, 854, 860
AcvI	CACGTG	1 cut(s)	662
AcyI	GRCGYC	2 cut(s)	50, 424
AfaI	GTAC	3 cut(s)	521, 556, 1109
AfiI	CCNNNNNNNGG	5 cut(s)	67, 130, 151, 162, 914
AflIII	ACRYGT	1 cut(s)	522
AgsI	TTSAA	4 cut(s)	544, 842, 859, 1120
AhdI	GACNNNNNGTC	1 cut(s)	511
AjnI	CCWGG	5 cut(s)	129, 150, 494, 699, 813
AluBI	AGCT	3 cut(s)	533, 676, 1021
AluI	AGCT	3 cut(s)	533, 676, 1021
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	2 cut(s)	194, 498
AlwI	GGATC	3 cut(s)	18, 623, 764
Ama87I	CYCGRG	2 cut(s)	94, 443
AoxI	GGCC	4 cut(s)	97, 132, 153, 240
ApeKI	GCWGC	3 cut(s)	159, 388, 1128
ApoI	RAATTY	5 cut(s)	64, 451, 484, 854, 860
ArsI	GACNNNNNNTTYG	2 cut(s)	243, 275
AseI	ATTAAT	1 cut(s)	1083
Asp700I	GAANNNNTTC	1 cut(s)	940
Asp718I	GGTACC	1 cut(s)	554
AspLEI	GCGC	7 cut(s)	114, 139, 177, 198, 228, 426, 479
AspS9I	GGNCC	4 cut(s)	97, 240, 498, 905
AsuC2I	CCSGG	3 cut(s)	444, 445, 481
AsuHPI	GGTGA	6 cut(s)	6, 470, 905, 936, 957, 1034
AvaI	CYCGRG	2 cut(s)	94, 443
AvaII	GGWCC	2 cut(s)	498, 905
BanI	GGYRCC	2 cut(s)	423, 554
BanII	GRGCYC	1 cut(s)	494
BbrPI	CACGTG	1 cut(s)	662
BbsI	GAAGAC	1 cut(s)	767
Bbv12I	GWGCWC	1 cut(s)	321
BbvCI	CCTCAGC	2 cut(s)	672, 1022
BbvI	GCAGC	3 cut(s)	171, 375, 1140
BccI	CCATC	2 cut(s)	812, 1004
BceAI	ACGGC	4 cut(s)	37, 166, 331, 788
BcgI	CGANNNNNNTGC	4 cut(s)	37, 71, 175, 209
BciT130I	CCWGG	5 cut(s)	131, 152, 496, 701, 815
BclI	TGATCA	2 cut(s)	535, 1135
BcnI	CCSGG	3 cut(s)	444, 445, 481
BcoDI	GTCTC	2 cut(s)	194, 498
BfaI	CTAG	1 cut(s)	578
BfoI	RGCGCY	3 cut(s)	229, 427, 480
BfuAI	ACCTGC	1 cut(s)	881
BglI	GCCNNNNNGGC	1 cut(s)	352
BisI	GCNGC	9 cut(s)	100, 135, 160, 167, 207, 303, 389, 422, 1129
BlpI	GCTNAGC	2 cut(s)	320, 570
BlsI	GCNGC	9 cut(s)	101, 136, 161, 168, 208, 304, 390, 423, 1130
Bme1390I	CCNGG	8 cut(s)	131, 152, 444, 445, 481, 496, 701, 815
Bme18I	GGWCC	2 cut(s)	498, 905
BmeRI	GACNNNNNGTC	1 cut(s)	511
BmeT110I	CYCGRG	2 cut(s)	94, 443
BmgT120I	GGNCC	4 cut(s)	97, 240, 498, 905
BmiI	GGNNCC	3 cut(s)	143, 425, 556
BmrFI	CCNGG	8 cut(s)	131, 152, 444, 445, 481, 496, 701, 815
BmrI	ACTGGG	1 cut(s)	640
BmsI	GCATC	8 cut(s)	162, 177, 583, 833, 886, 964, 996, 1071
BmuI	ACTGGG	1 cut(s)	640
BpiI	GAAGAC	1 cut(s)	767
BplI	GAGNNNNNCTC	2 cut(s)	77, 109
Bpu10I	CCTNAGC	2 cut(s)	672, 1022
Bpu1102I	GCTNAGC	2 cut(s)	320, 570
BpuMI	CCSGG	3 cut(s)	444, 445, 481
Bsa29I	ATCGAT	1 cut(s)	1065
BsaAI	YACGTR	2 cut(s)	523, 662
BsaHI	GRCGYC	2 cut(s)	50, 424
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	6 cut(s)	30, 207, 443, 494, 700, 804
BsaWI	WCCGGW	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	5 cut(s)	67, 130, 151, 162, 914
Bse118I	RCCGGY	4 cut(s)	114, 162, 324, 432
Bse1I	ACTGG	3 cut(s)	635, 686, 744
Bse3DI	GCAATG	2 cut(s)	386, 1138
BseBI	CCWGG	5 cut(s)	131, 152, 496, 701, 815
BseCI	ATCGAT	1 cut(s)	1065
BseDI	CCNNGG	6 cut(s)	30, 207, 443, 494, 700, 804
BseGI	GGATG	2 cut(s)	453, 823
BseLI	CCNNNNNNNGG	5 cut(s)	67, 130, 151, 162, 914
BseMI	GCAATG	2 cut(s)	386, 1138
BseMII	CTCAG	3 cut(s)	334, 686, 1013
BseNI	ACTGG	3 cut(s)	635, 686, 744
BseRI	GAGGAG	3 cut(s)	236, 563, 930
BseXI	GCAGC	3 cut(s)	171, 375, 1140
Bsh1236I	CGCG	5 cut(s)	137, 139, 177, 198, 209
BshFI	GGCC	4 cut(s)	99, 134, 155, 242
BshNI	GGYRCC	2 cut(s)	423, 554
BshVI	ATCGAT	1 cut(s)	1065
BsiHKAI	GWGCWC	1 cut(s)	321
BsiHKCI	CYCGRG	2 cut(s)	94, 443
BsiSI	CCGG	9 cut(s)	115, 163, 325, 338, 418, 433, 444, 456, 480
BslI	CCNNNNNNNGG	5 cut(s)	67, 130, 151, 162, 914
BsmAI	GTCTC	2 cut(s)	194, 498
BsmBI	CGTCTC	1 cut(s)	498
BsnI	GGCC	4 cut(s)	99, 134, 155, 242
Bso31I	GGTCTC	1 cut(s)	194
BsoBI	CYCGRG	2 cut(s)	94, 443
Bsp1286I	GDGCHC	2 cut(s)	321, 494
Bsp143I	GATC	5 cut(s)	23, 535, 615, 756, 1135
Bsp1720I	GCTNAGC	2 cut(s)	320, 570
BspANI	GGCC	4 cut(s)	99, 134, 155, 242
BspCNI	CTCAG	3 cut(s)	333, 685, 1014
BspDI	ATCGAT	1 cut(s)	1065
BspFNI	CGCG	5 cut(s)	137, 139, 177, 198, 209
BspLI	GGNNCC	3 cut(s)	143, 425, 556
BspMI	ACCTGC	1 cut(s)	881
BspPI	GGATC	3 cut(s)	18, 623, 764
BspT107I	GGYRCC	2 cut(s)	423, 554
BspTNI	GGTCTC	1 cut(s)	194
BsrDI	GCAATG	2 cut(s)	386, 1138
BsrFI	RCCGGY	4 cut(s)	114, 162, 324, 432
BsrI	ACTGG	3 cut(s)	635, 686, 744
BssAI	RCCGGY	4 cut(s)	114, 162, 324, 432
BssECI	CCNNGG	6 cut(s)	30, 207, 443, 494, 700, 804
BssMI	GATC	5 cut(s)	23, 535, 615, 756, 1135
BssNI	GRCGYC	2 cut(s)	50, 424
Bst2UI	CCWGG	5 cut(s)	131, 152, 496, 701, 815
Bst4CI	ACNGT	2 cut(s)	310, 1055
Bst6I	CTCTTC	2 cut(s)	1003, 1115
BstACI	GRCGYC	2 cut(s)	50, 424
BstAPI	GCANNNNNTGC	2 cut(s)	385, 896
BstBAI	YACGTR	2 cut(s)	523, 662
BstC8I	GCNNGC	7 cut(s)	116, 157, 164, 179, 386, 643, 647
BstDEI	CTNAG	5 cut(s)	320, 570, 672, 828, 1022
BstDSI	CCRYGG	2 cut(s)	207, 804
BstEII	GGTNACC	1 cut(s)	1040
BstENI	CCTNNNNNAGG	3 cut(s)	128, 149, 912
BstF5I	GGATG	2 cut(s)	453, 823
BstFNI	CGCG	5 cut(s)	137, 139, 177, 198, 209
BstH2I	RGCGCY	3 cut(s)	229, 427, 480
BstHHI	GCGC	7 cut(s)	114, 139, 177, 198, 228, 426, 479
BstKTI	GATC	5 cut(s)	26, 538, 618, 759, 1138
BstMAI	GTCTC	2 cut(s)	194, 498
BstMBI	GATC	5 cut(s)	23, 535, 615, 756, 1135
BstNI	CCWGG	5 cut(s)	131, 152, 496, 701, 815
BstNSI	RCATGY	1 cut(s)	959
BstPI	GGTNACC	1 cut(s)	1040
BstSCI	CCNGG	8 cut(s)	129, 150, 442, 443, 479, 494, 699, 813
BstUI	CGCG	5 cut(s)	137, 139, 177, 198, 209
BstV1I	GCAGC	3 cut(s)	171, 375, 1140
BstV2I	GAAGAC	1 cut(s)	767
Bsu15I	ATCGAT	1 cut(s)	1065
BsuRI	GGCC	4 cut(s)	99, 134, 155, 242
BsuTUI	ATCGAT	1 cut(s)	1065
BtgI	CCRYGG	2 cut(s)	207, 804
BtsCI	GGATG	2 cut(s)	453, 823
BtsI	GCAGTG	1 cut(s)	568
BtsIMutI	CAGTG	3 cut(s)	568, 737, 1051
BveI	ACCTGC	1 cut(s)	881
Cac8I	GCNNGC	7 cut(s)	116, 157, 164, 179, 386, 643, 647
CfoI	GCGC	7 cut(s)	114, 139, 177, 198, 228, 426, 479
Cfr10I	RCCGGY	4 cut(s)	114, 162, 324, 432
Cfr13I	GGNCC	4 cut(s)	97, 240, 498, 905
Cfr42I	CCGCGG	1 cut(s)	210
Cfr9I	CCCGGG	1 cut(s)	443
ClaI	ATCGAT	1 cut(s)	1065
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	3 cut(s)	520, 555, 1108
CviAII	CATG	3 cut(s)	780, 911, 956
CviQI	GTAC	3 cut(s)	520, 555, 1108
DdeI	CTNAG	5 cut(s)	320, 570, 672, 828, 1022
DinI	GGCGCC	1 cut(s)	425
DpnI	GATC	5 cut(s)	25, 537, 617, 758, 1137
DpnII	GATC	5 cut(s)	23, 535, 615, 756, 1135
DriI	GACNNNNNGTC	1 cut(s)	511
Eam1104I	CTCTTC	2 cut(s)	1003, 1115
Eam1105I	GACNNNNNGTC	1 cut(s)	511
EarI	CTCTTC	2 cut(s)	1003, 1115
EciI	GGCGGA	2 cut(s)	16, 116
Eco24I	GRGCYC	1 cut(s)	494
Eco31I	GGTCTC	1 cut(s)	194
Eco32I	GATATC	1 cut(s)	37
Eco47I	GGWCC	2 cut(s)	498, 905
Eco72I	CACGTG	1 cut(s)	662
Eco88I	CYCGRG	2 cut(s)	94, 443
Eco91I	GGTNACC	1 cut(s)	1040
EcoNI	CCTNNNNNAGG	3 cut(s)	128, 149, 912
EcoO109I	RGGNCCY	1 cut(s)	905
EcoO65I	GGTNACC	1 cut(s)	1040
EcoRI	GAATTC	2 cut(s)	451, 484
EcoRII	CCWGG	5 cut(s)	129, 150, 494, 699, 813
EcoRV	GATATC	1 cut(s)	37
EcoT38I	GRGCYC	1 cut(s)	494
EgeI	GGCGCC	1 cut(s)	425
EheI	GGCGCC	1 cut(s)	425
Esp3I	CGTCTC	1 cut(s)	498
FaeI	CATG	3 cut(s)	783, 914, 959
FaiI	YATR	9 cut(s)	344, 393, 395, 692, 781, 799, 912, 957, 1005
FatI	CATG	3 cut(s)	779, 910, 955
FauI	CCCGC	2 cut(s)	65, 638
FauNDI	CATATG	1 cut(s)	393
FbaI	TGATCA	2 cut(s)	535, 1135
Fnu4HI	GCNGC	9 cut(s)	100, 135, 160, 167, 207, 303, 389, 422, 1129
FokI	GGATG	2 cut(s)	460, 830
FriOI	GRGCYC	1 cut(s)	494
Fsp4HI	GCNGC	9 cut(s)	100, 135, 160, 167, 207, 303, 389, 422, 1129
FspBI	CTAG	1 cut(s)	578
GlaI	GCGC	7 cut(s)	113, 138, 176, 197, 227, 425, 478
GluI	GCNGC	9 cut(s)	100, 135, 160, 167, 207, 303, 389, 422, 1129
HaeII	RGCGCY	3 cut(s)	229, 427, 480
HaeIII	GGCC	4 cut(s)	99, 134, 155, 242
HapII	CCGG	9 cut(s)	115, 163, 325, 338, 418, 433, 444, 456, 480
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	7 cut(s)	114, 139, 177, 198, 228, 426, 479
Hin1I	GRCGYC	2 cut(s)	50, 424
Hin1II	CATG	3 cut(s)	783, 914, 959
Hin6I	GCGC	7 cut(s)	112, 137, 175, 196, 226, 424, 477
HinP1I	GCGC	7 cut(s)	112, 137, 175, 196, 226, 424, 477
HinfI	GANTC	5 cut(s)	332, 509, 581, 624, 941
HpaII	CCGG	9 cut(s)	115, 163, 325, 338, 418, 433, 444, 456, 480
HphI	GGTGA	6 cut(s)	6, 470, 905, 936, 957, 1034
Hpy188I	TCNGA	3 cut(s)	62, 82, 866
Hpy188III	TCNNGA	4 cut(s)	277, 501, 578, 754
HpyAV	CCTTC	1 cut(s)	155
HpyCH4III	ACNGT	2 cut(s)	310, 1055
HpyCH4IV	ACGT	2 cut(s)	522, 661
HpyF3I	CTNAG	5 cut(s)	320, 570, 672, 828, 1022
HpySE526I	ACGT	2 cut(s)	522, 661
Hsp92I	GRCGYC	2 cut(s)	50, 424
Hsp92II	CATG	3 cut(s)	783, 914, 959
HspAI	GCGC	7 cut(s)	112, 137, 175, 196, 226, 424, 477
KasI	GGCGCC	1 cut(s)	423
KpnI	GGTACC	1 cut(s)	558
KroI	GCCGGC	2 cut(s)	114, 162
KroNI	GCCGGC	2 cut(s)	116, 164
Ksp22I	TGATCA	2 cut(s)	535, 1135
KspI	CCGCGG	1 cut(s)	210
Kzo9I	GATC	5 cut(s)	23, 535, 615, 756, 1135
LmnI	GCTCC	5 cut(s)	63, 211, 223, 474, 1018
Lsp1109I	GCAGC	3 cut(s)	171, 375, 1140
LweI	GCATC	8 cut(s)	162, 177, 583, 833, 886, 964, 996, 1071
MaeI	CTAG	1 cut(s)	578
MaeII	ACGT	2 cut(s)	522, 661
MaeIII	GTNAC	2 cut(s)	458, 1040
MalI	GATC	5 cut(s)	25, 537, 617, 758, 1137
MboI	GATC	5 cut(s)	23, 535, 615, 756, 1135
MboII	GAAGA	6 cut(s)	3, 767, 845, 983, 990, 1132
MfeI	CAATTG	1 cut(s)	215
MhlI	GDGCHC	2 cut(s)	321, 494
MluCI	AATT	9 cut(s)	64, 104, 215, 451, 484, 693, 845, 854, 860
Mly113I	GGCGCC	1 cut(s)	424
MlyI	GAGTC	2 cut(s)	341, 503
MmeI	TCCRAC	2 cut(s)	105, 889
MroNI	GCCGGC	2 cut(s)	114, 162
MroXI	GAANNNNTTC	1 cut(s)	940
MseI	TTAA	1 cut(s)	1083
MslI	CAYNNNNRTG	1 cut(s)	543
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	9 cut(s)	115, 163, 325, 338, 418, 433, 444, 456, 480
MspR9I	CCNGG	8 cut(s)	131, 152, 444, 445, 481, 496, 701, 815
MunI	CAATTG	1 cut(s)	215
MvaI	CCWGG	5 cut(s)	131, 152, 496, 701, 815
MvnI	CGCG	5 cut(s)	137, 139, 177, 198, 209
NaeI	GCCGGC	2 cut(s)	116, 164
NarI	GGCGCC	1 cut(s)	424
NciI	CCSGG	3 cut(s)	444, 445, 481
NdeI	CATATG	1 cut(s)	393
NdeII	GATC	5 cut(s)	23, 535, 615, 756, 1135
NgoMIV	GCCGGC	2 cut(s)	114, 162
NlaIII	CATG	3 cut(s)	783, 914, 959
NlaIV	GGNNCC	3 cut(s)	143, 425, 556
NmeAIII	GCCGAG	1 cut(s)	55
NmuCI	GTSAC	2 cut(s)	458, 1040
NspI	RCATGY	1 cut(s)	959
PaqCI	CACCTGC	1 cut(s)	881
PcsI	WCGNNNNNNNCGW	2 cut(s)	74, 291
PdiI	GCCGGC	2 cut(s)	116, 164
PdmI	GAANNNNTTC	1 cut(s)	940
PfeI	GAWTC	3 cut(s)	581, 624, 941
PkrI	GCNGC	9 cut(s)	101, 136, 161, 168, 208, 304, 390, 423, 1130
PleI	GAGTC	2 cut(s)	340, 503
PluTI	GGCGCC	1 cut(s)	427
PmaCI	CACGTG	1 cut(s)	662
PmlI	CACGTG	1 cut(s)	662
PpsI	GAGTC	2 cut(s)	340, 503
Ppu21I	YACGTR	2 cut(s)	523, 662
PpuMI	RGGWCCY	1 cut(s)	905
PshBI	ATTAAT	1 cut(s)	1083
Psp5II	RGGWCCY	1 cut(s)	905
Psp6I	CCWGG	5 cut(s)	129, 150, 494, 699, 813
PspCI	CACGTG	1 cut(s)	662
PspEI	GGTNACC	1 cut(s)	1040
PspGI	CCWGG	5 cut(s)	129, 150, 494, 699, 813
PspN4I	GGNNCC	3 cut(s)	143, 425, 556
PspPI	GGNCC	4 cut(s)	97, 240, 498, 905
PspPPI	RGGWCCY	1 cut(s)	905
RsaI	GTAC	3 cut(s)	521, 556, 1109
RsaNI	GTAC	3 cut(s)	520, 555, 1108
RseI	CAYNNNNRTG	1 cut(s)	543
SacII	CCGCGG	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	1083
SatI	GCNGC	9 cut(s)	100, 135, 160, 167, 207, 303, 389, 422, 1129
Sau3AI	GATC	5 cut(s)	23, 535, 615, 756, 1135
Sau96I	GGNCC	4 cut(s)	97, 240, 498, 905
SchI	GAGTC	2 cut(s)	341, 503
ScrFI	CCNGG	8 cut(s)	131, 152, 444, 445, 481, 496, 701, 815
SduI	GDGCHC	2 cut(s)	321, 494
SetI	ASST	8 cut(s)	500, 525, 535, 664, 678, 895, 910, 1023
SfaNI	GCATC	8 cut(s)	162, 177, 583, 833, 886, 964, 996, 1071
SfoI	GGCGCC	1 cut(s)	425
Sfr303I	CCGCGG	1 cut(s)	210
SgrBI	CCGCGG	1 cut(s)	210
SinI	GGWCC	2 cut(s)	498, 905
SmaI	CCCGGG	1 cut(s)	445
SmiMI	CAYNNNNRTG	1 cut(s)	543
Sse9I	AATT	9 cut(s)	64, 104, 215, 451, 484, 693, 845, 854, 860
SspDI	GGCGCC	1 cut(s)	423
SspI	AATATT	1 cut(s)	1114
SspMI	CTAG	1 cut(s)	578
StyD4I	CCNGG	8 cut(s)	129, 150, 442, 443, 479, 494, 699, 813
TaaI	ACNGT	2 cut(s)	310, 1055
TaiI	ACGT	2 cut(s)	525, 664
TaqI	TCGA	5 cut(s)	42, 185, 411, 488, 1065
TasI	AATT	9 cut(s)	64, 104, 215, 451, 484, 693, 845, 854, 860
TatI	WGTACW	1 cut(s)	1107
TauI	GCSGC	6 cut(s)	102, 137, 169, 209, 305, 424
TfiI	GAWTC	3 cut(s)	581, 624, 941
Tru1I	TTAA	1 cut(s)	1083
Tru9I	TTAA	1 cut(s)	1083
TscAI	CASTG	3 cut(s)	568, 744, 1058
TseFI	GTSAC	2 cut(s)	458, 1040
TseI	GCWGC	3 cut(s)	159, 388, 1128
Tsp45I	GTSAC	2 cut(s)	458, 1040
TspDTI	ATGAA	3 cut(s)	464, 595, 1069
TspGWI	ACGGA	1 cut(s)	477
TspMI	CCCGGG	1 cut(s)	443
TspRI	CASTG	3 cut(s)	568, 744, 1058
VpaK11BI	GGWCC	2 cut(s)	498, 905
VspI	ATTAAT	1 cut(s)	1083
XagI	CCTNNNNNAGG	3 cut(s)	128, 149, 912
XapI	RAATTY	5 cut(s)	64, 451, 484, 854, 860
XbaI	TCTAGA	1 cut(s)	577
XceI	RCATGY	1 cut(s)	959
XmaI	CCCGGG	1 cut(s)	443
XmnI	GAANNNNTTC	1 cut(s)	940
XspI	CTAG	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.