Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0004309

Physical Location & Seq

Genomic Coordinates Reverse (-)

10210044 .. 10212326

Gene Structure 2283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1133300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGGATTGAATTAGGGTTTTTATTCGTTTTAAAAATCTCATCCCTTCAACTTCTGGTGGATCATTGGGTTCTATTGGGTATCGGCAGGTTATGTATAATTTTCCTGGGTTTTGATGTGTTTTTTGTTGTTTTCTGTGTTACACTGGCATGTATGATTGGTATCGCAGTTTGTTGCTGTCTTTCGTGCATTTTTTCACTTTTATATGCTATCATAGATCAGGATGGAGCATCTAAGGAAGACATCGAACAACTTTCAAAATTTAGATTTAGAAAAGTTGCCAATGAGAAAGTTGCCGGTGATGTACAAGGTGGAGTAATGACTGAATGTGGAACAGATTCACCCATCGAACATGAGTGCTGCATCTGCCTTTCTTGTTATGATGATGGAGTGGAACTAAGGCAACTTCCTTGTGCCCACCATTTTCACTGTTTCTACATCAACAAGTGGCTTTTTATCAACACTACCTATCCTCTCTACAAGTACAATATCTTGAAGAGTAGCAGCCAGAACCAAGGGGAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031090 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

176

Amino Acids

19.69

Weight (kDa)

5.25

Isoelectric Point (pI)

52.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12760 AT1G12760 AT1G63170
fragaria_vesca	FvH4_5g01740 FvH4_5g01740 FvH4_5g01740 FvH4_5g01740
malus_domestica	MD00G1110500.v1.1 MD04G1044500.v1.1 MD04G1064900.v1.1 MD10G1187400.v1.1 MD11G1252000.v1.1 MD13G1133300.v1.1
prunus_persica	Prupe.5G092900_v2.0.a1 Prupe.5G092900_v2.0.a1 Prupe.5G092900_v2.0.a1
pyrus_communis	pycom04g05870 pycom06g07380
rosa_chinensis	RchiOBHm_Chr7g0198981
rosa_laevigata	RLG00000003827
rosa_multiflora	Rmu_co8298497.1_g000001 Rmu_sc0006266.1_g000024 Rmu_sc0007328.1_g000010
rosa_roxburghii	Rroxscaffold_3G00257250
rosa_rugosa	Rorug07G0051800 Rorug07G0051900 Rorug07G0051900
rosa_samantha	Rh7AG174900 Rh7BG178100 Rh7CG184100 Rh7DG177500
rosa_wichuraiana	Rw7G015340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	78
AclWI	GGATC	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	260
AfaI	GTAC	2 cut(s)	306, 485
AgsI	TTSAA	4 cut(s)	11, 50, 258, 496
AjnI	CCWGG	1 cut(s)	105
AlwI	GGATC	1 cut(s)	69
ApeKI	GCWGC	2 cut(s)	360, 504
ApoI	RAATTY	1 cut(s)	260
Asp700I	GAANNNNTTC	1 cut(s)	337
AsuHPI	GGTGA	2 cut(s)	311, 333
BaeGI	GKGCMC	1 cut(s)	418
BbsI	GAAGAC	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	347, 516
BccI	CCATC	3 cut(s)	218, 353, 380
BciT130I	CCWGG	1 cut(s)	107
BfuAI	ACCTGC	1 cut(s)	78
BisI	GCNGC	2 cut(s)	361, 505
BlsI	GCNGC	2 cut(s)	362, 506
Bme1390I	CCNGG	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	107
BmsI	GCATC	2 cut(s)	239, 372
BpiI	GAAGAC	1 cut(s)	246
BsaBI	GATNNNNATC	1 cut(s)	161
BsaJI	CCNNGG	2 cut(s)	106, 514
Bse118I	RCCGGY	1 cut(s)	296
Bse1I	ACTGG	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	2 cut(s)	106, 514
BseGI	GGATG	2 cut(s)	41, 229
BseJI	GATNNNNATC	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	150
BseSI	GKGCMC	1 cut(s)	418
BseXI	GCAGC	2 cut(s)	347, 516
BsiSI	CCGG	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp1407I	TGTACA	1 cut(s)	304
Bsp143I	GATC	2 cut(s)	61, 217
BspMI	ACCTGC	1 cut(s)	78
BspPI	GGATC	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	296
BsrGI	TGTACA	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	150
BssAI	RCCGGY	1 cut(s)	296
BssECI	CCNNGG	2 cut(s)	106, 514
BssMI	GATC	2 cut(s)	61, 217
BssT1I	CCWWGG	1 cut(s)	514
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	1 cut(s)	431
Bst6I	CTCTTC	1 cut(s)	491
BstAUI	TGTACA	1 cut(s)	304
BstDEI	CTNAG	2 cut(s)	234, 398
BstF5I	GGATG	2 cut(s)	41, 229
BstKTI	GATC	2 cut(s)	64, 220
BstMBI	GATC	2 cut(s)	61, 217
BstMWI	GCNNNNNNNGC	1 cut(s)	366
BstNI	CCWGG	1 cut(s)	107
BstNSI	RCATGY	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	105
BstSLI	GKGCMC	1 cut(s)	418
BstV1I	GCAGC	2 cut(s)	347, 516
BstV2I	GAAGAC	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	41, 229
BtsIMutI	CAGTG	2 cut(s)	143, 427
BveI	ACCTGC	1 cut(s)	78
Cfr10I	RCCGGY	1 cut(s)	296
Csp6I	GTAC	2 cut(s)	305, 484
CviAII	CATG	2 cut(s)	150, 353
CviJI	RGCY	2 cut(s)	451, 507
CviKI_1	RGCY	2 cut(s)	451, 507
CviQI	GTAC	2 cut(s)	305, 484
DdeI	CTNAG	2 cut(s)	234, 398
DpnI	GATC	2 cut(s)	63, 219
DpnII	GATC	2 cut(s)	61, 217
DraI	TTTAAA	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	491
EarI	CTCTTC	1 cut(s)	491
Eco130I	CCWWGG	1 cut(s)	514
EcoRII	CCWGG	1 cut(s)	105
EcoT14I	CCWWGG	1 cut(s)	514
ErhI	CCWWGG	1 cut(s)	514
FaeI	CATG	2 cut(s)	153, 356
FaiI	YATR	9 cut(s)	94, 98, 151, 155, 205, 207, 215, 354, 381
FatI	CATG	2 cut(s)	149, 352
Fnu4HI	GCNGC	2 cut(s)	361, 505
FokI	GGATG	2 cut(s)	28, 236
Fsp4HI	GCNGC	2 cut(s)	361, 505
GluI	GCNGC	2 cut(s)	361, 505
HapII	CCGG	1 cut(s)	297
Hin1II	CATG	2 cut(s)	153, 356
HinfI	GANTC	1 cut(s)	338
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	2 cut(s)	311, 333
Hpy188III	TCNNGA	2 cut(s)	221, 493
HpyAV	CCTTC	1 cut(s)	56
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4V	TGCA	2 cut(s)	189, 363
HpyF10VI	GCNNNNNNNGC	1 cut(s)	366
HpyF3I	CTNAG	2 cut(s)	234, 398
Hsp92II	CATG	2 cut(s)	153, 356
Kzo9I	GATC	2 cut(s)	61, 217
LmnI	GCTCC	1 cut(s)	227
LpnPI	CCDG	8 cut(s)	41, 73, 92, 119, 131, 206, 310, 521
Lsp1109I	GCAGC	2 cut(s)	347, 516
LweI	GCATC	2 cut(s)	239, 372
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	2 cut(s)	63, 219
MboI	GATC	2 cut(s)	61, 217
MboII	GAAGA	2 cut(s)	251, 508
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	3 cut(s)	11, 99, 260
MnlI	CCTC	1 cut(s)	483
MroXI	GAANNNNTTC	1 cut(s)	337
MseI	TTAA	1 cut(s)	32
MslI	CAYNNNNRTG	1 cut(s)	148
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	1 cut(s)	366
NdeII	GATC	2 cut(s)	61, 217
NlaIII	CATG	2 cut(s)	153, 356
NspI	RCATGY	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	338
PkrI	GCNGC	2 cut(s)	362, 506
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
RsaI	GTAC	2 cut(s)	306, 485
RsaNI	GTAC	2 cut(s)	305, 484
RseI	CAYNNNNRTG	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	2 cut(s)	361, 505
Sau3AI	GATC	2 cut(s)	61, 217
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	1 cut(s)	418
SetI	ASST	3 cut(s)	92, 313, 470
SfaNI	GCATC	2 cut(s)	239, 372
SmiMI	CAYNNNNRTG	1 cut(s)	148
Sse9I	AATT	3 cut(s)	11, 99, 260
StyD4I	CCNGG	1 cut(s)	105
StyI	CCWWGG	1 cut(s)	514
TaaI	ACNGT	1 cut(s)	431
TaqI	TCGA	2 cut(s)	246, 348
TasI	AATT	3 cut(s)	11, 99, 260
TatI	WGTACW	2 cut(s)	304, 483
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	2 cut(s)	150, 434
TseI	GCWGC	2 cut(s)	360, 504
TspRI	CASTG	2 cut(s)	150, 434
XapI	RAATTY	1 cut(s)	260
XceI	RCATGY	1 cut(s)	153
XmnI	GAANNNNTTC	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.