pycom04g05870

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
5724432 .. 5727427
2996 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g05870.5

Sequence Viewer

Length: 1158 bp
ATGGCCTCGCCAAACCGATCTGCGGAGAACATCGTCGACACGACGCCGTTGTTGACCAACTCGGGCTGGTCGTCTGACGATTCGAACTCGGGGCGCCAGCGATTGGTGCGCCGACAGAGCCTGCAGCAGGCCGCGCGGTTTCTTCGCCAGGCCAGCAGCCGCCGCCTCATGCGCGAGCCGTCGATGCTGGTCCGCGAGACCGCGGCAGAGCAATTGGAGGAGAGGCAGAGTGATTGGGCGTACTCCAAGCCGGTGGTGGTTCTCGACATCATCTGGAACTTCGCCTTCGTCGTCGTGGCGCTGACGGTCCTGGTTCTGAGCCGGGACGAATTGCCGAATGTGCCCCTGAGACTGTGGATCGTGGGGTACGCTGTGCAGTGCGTGGTGCATATGGTTTGTGTTTGCGTCGAGTTTCGGAGGCGGCAGTCCCAGCAGAGAAGCCGGTTTTCGGGGGTGAATTCTGCGGAGGAAGGGGTGAGGAGTGTTGGGAATTTGGGTTCTGGGTCGAGAGAGGGGGATTTGTCATCGCAGTACGTGTCGTTGGCTGATCATATGACTGAGGAGGGTACCAGCAGCGTTGCTAAACACCTGGAATCTGCAAATACAATGTTTTCGTTTATCTGGTGGATCATTGGGTTCTATTGGGTATCGGCAGGTGGTCAATCCTTAGCAAACGCCTCCCCGCAGCTTTACTGGCTATGTATAATTTTCCTGGGTTTTGATGTGTTTTTTGTCGTTTTCTGTGTTGCGCTGGCTTGCATCATTGGTATCGCGGTTTGTTGCTGTCTTCCGTGCATTATTGCACTTTTATATGCTGTCGCAGATCAGGATGGAGCATCTAAGGAAGACATCGAACAGCTTCCAAAATTCAAATTCAGAAAAGTTGGTAATGAGAAAGTTGCCGGCGATGGACAAGGTGGAGGAGTAATGACTGAATGTGGTACAGATTCACCTATTGAACATGTTCTTTCTCAGGAGGATGCGGAGTGCTGCATCTGCCTTTCTTCTTATGACGACGGAGTGGAACTGAGGCAACTTCCTTGTGGCCACCATTTTCACTGTTCCTGCATTGACAAGTGGCTTTTTATCAACGCTACCTGTCCTCTCTGCAAGTACAATATCTTGAAGAGTAGCAGCCAGGATCAAGGGGAAGTTTAA

Protein Analysis

386

Amino Acids

42.67

Weight (kDa)

5.36

Isoelectric Point (pI)

61.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 644
Acc36I ACCTGC 1 cut(s) 644
Acc65I GGTACC 1 cut(s) 566
AccB1I GGYRCC 2 cut(s) 93, 566
AccB7I CCANNNNNTGG 1 cut(s) 103
AccI GTMKAC 1 cut(s) 36
AccII CGCG 6 cut(s) 134, 136, 174, 195, 203, 773
AclWI GGATC 3 cut(s) 365, 635, 1149
AcoI YGGCCR 1 cut(s) 1045
AcsI RAATTY 4 cut(s) 457, 490, 866, 872
AcyI GRCGYC 2 cut(s) 44, 94
AfaI GTAC 6 cut(s) 242, 368, 533, 568, 943, 1115
AfiI CCNNNNNNNGG 4 cut(s) 22, 103, 127, 448
AflIII ACRYGT 2 cut(s) 534, 961
AgsI TTSAA 3 cut(s) 871, 959, 1126
AjnI CCWGG 5 cut(s) 147, 309, 588, 711, 1137
AloI GAACNNNNNNTCC 2 cut(s) 481, 513
AluBI AGCT 2 cut(s) 688, 859
AluI AGCT 2 cut(s) 688, 859
Alw26I GTCTC 2 cut(s) 191, 343
AlwI GGATC 3 cut(s) 365, 635, 1149
AlwNI CAGNNNCTG 1 cut(s) 121
Ama87I CYCGRG 2 cut(s) 61, 88
AoxI GGCC 4 cut(s) 3, 129, 150, 1045
ApeKI GCWGC 6 cut(s) 124, 156, 573, 685, 990, 1134
ApoI RAATTY 4 cut(s) 457, 490, 866, 872
Asp700I GAANNNNTTC 2 cut(s) 858, 963
Asp718I GGTACC 1 cut(s) 566
AspLEI GCGC 6 cut(s) 96, 111, 136, 174, 301, 751
AspS9I GGNCC 2 cut(s) 190, 307
AsuC2I CCSGG 1 cut(s) 323
AsuHPI GGTGA 3 cut(s) 466, 487, 942
AsuII TTCGAA 1 cut(s) 83
AvaI CYCGRG 2 cut(s) 61, 88
AvaII GGWCC 2 cut(s) 190, 307
BaeGI GKGCMC 1 cut(s) 345
BalI TGGCCA 1 cut(s) 1047
BanI GGYRCC 2 cut(s) 93, 566
BbsI GAAGAC 2 cut(s) 779, 852
BbvI GCAGC 6 cut(s) 136, 168, 585, 697, 977, 1146
BccI CCATC 2 cut(s) 824, 902
BceAI ACGGC 2 cut(s) 31, 163
BciT130I CCWGG 5 cut(s) 149, 311, 590, 713, 1139
BclI TGATCA 1 cut(s) 547
BcnI CCSGG 1 cut(s) 323
BcoDI GTCTC 2 cut(s) 191, 343
BfmI CTRYAG 1 cut(s) 122
BfoI RGCGCY 2 cut(s) 97, 302
BfuAI ACCTGC 1 cut(s) 644
Bme1390I CCNGG 6 cut(s) 149, 311, 323, 590, 713, 1139
Bme18I GGWCC 2 cut(s) 190, 307
BmeT110I CYCGRG 2 cut(s) 61, 88
BmgT120I GGNCC 2 cut(s) 190, 307
BmiI GGNNCC 2 cut(s) 95, 568
BmrFI CCNGG 6 cut(s) 149, 311, 323, 590, 713, 1139
BmsI GCATC 5 cut(s) 174, 768, 845, 970, 1002
BpiI GAAGAC 2 cut(s) 779, 852
Bpu10I CCTNAGC 1 cut(s) 667
Bpu14I TTCGAA 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 323
BsaAI YACGTR 1 cut(s) 535
BsaHI GRCGYC 2 cut(s) 44, 94
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 2 cut(s) 201, 712
Bsc4I CCNNNNNNNGG 4 cut(s) 22, 103, 127, 448
Bse118I RCCGGY 3 cut(s) 250, 441, 902
Bse1I ACTGG 1 cut(s) 698
BseBI CCWGG 5 cut(s) 149, 311, 590, 713, 1139
BseDI CCNNGG 2 cut(s) 201, 712
BseGI GGATG 2 cut(s) 835, 985
BseLI CCNNNNNNNGG 4 cut(s) 22, 103, 127, 448
BseMII CTCAG 5 cut(s) 308, 338, 549, 986, 1019
BseNI ACTGG 1 cut(s) 698
BseRI GAGGAG 4 cut(s) 233, 493, 575, 936
BseSI GKGCMC 1 cut(s) 345
BseXI GCAGC 6 cut(s) 136, 168, 585, 697, 977, 1146
BseYI CCCAGC 1 cut(s) 429
BsgI GTGCAG 1 cut(s) 395
Bsh1236I CGCG 6 cut(s) 134, 136, 174, 195, 203, 773
BshFI GGCC 4 cut(s) 5, 131, 152, 1047
BshNI GGYRCC 2 cut(s) 93, 566
BsiHKCI CYCGRG 2 cut(s) 61, 88
BsiSI CCGG 4 cut(s) 251, 322, 442, 903
BslFI GGGAC 2 cut(s) 338, 412
BslI CCNNNNNNNGG 4 cut(s) 22, 103, 127, 448
BsmAI GTCTC 2 cut(s) 191, 343
BsmFI GGGAC 2 cut(s) 338, 412
BsnI GGCC 4 cut(s) 5, 131, 152, 1047
Bso31I GGTCTC 1 cut(s) 191
BsoBI CYCGRG 2 cut(s) 61, 88
Bsp119I TTCGAA 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 6 cut(s) 17, 357, 547, 627, 823, 1141
BspANI GGCC 4 cut(s) 5, 131, 152, 1047
BspCNI CTCAG 5 cut(s) 309, 339, 550, 985, 1020
BspFNI CGCG 6 cut(s) 134, 136, 174, 195, 203, 773
BspLI GGNNCC 2 cut(s) 95, 568
BspMAI CTGCAG 1 cut(s) 126
BspMI ACCTGC 1 cut(s) 644
BspPI GGATC 3 cut(s) 365, 635, 1149
BspT104I TTCGAA 1 cut(s) 83
BspT107I GGYRCC 2 cut(s) 93, 566
BspTNI GGTCTC 1 cut(s) 191
BsrFI RCCGGY 3 cut(s) 250, 441, 902
BsrI ACTGG 1 cut(s) 698
BssAI RCCGGY 3 cut(s) 250, 441, 902
BssECI CCNNGG 2 cut(s) 201, 712
BssMI GATC 6 cut(s) 17, 357, 547, 627, 823, 1141
BssNI GRCGYC 2 cut(s) 44, 94
Bst2UI CCWGG 5 cut(s) 149, 311, 590, 713, 1139
Bst4CI ACNGT 3 cut(s) 307, 354, 1061
Bst6I CTCTTC 1 cut(s) 1121
BstACI GRCGYC 2 cut(s) 44, 94
BstBAI YACGTR 1 cut(s) 535
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 8 cut(s) 98, 122, 129, 154, 176, 753, 757, 904
BstDEI CTNAG 7 cut(s) 317, 347, 558, 667, 840, 972, 1028
BstDSI CCRYGG 1 cut(s) 201
BstENI CCTNNNNNAGG 1 cut(s) 125
BstF5I GGATG 2 cut(s) 835, 985
BstFNI CGCG 6 cut(s) 134, 136, 174, 195, 203, 773
BstH2I RGCGCY 2 cut(s) 97, 302
BstHHI GCGC 6 cut(s) 96, 111, 136, 174, 301, 751
BstKTI GATC 6 cut(s) 20, 360, 550, 630, 826, 1144
BstMAI GTCTC 2 cut(s) 191, 343
BstMBI GATC 6 cut(s) 17, 357, 547, 627, 823, 1141
BstNI CCWGG 5 cut(s) 149, 311, 590, 713, 1139
BstNSI RCATGY 1 cut(s) 965
BstSCI CCNGG 6 cut(s) 147, 309, 321, 588, 711, 1137
BstSFI CTRYAG 1 cut(s) 122
BstSLI GKGCMC 1 cut(s) 345
BstUI CGCG 6 cut(s) 134, 136, 174, 195, 203, 773
BstV1I GCAGC 6 cut(s) 136, 168, 585, 697, 977, 1146
BstV2I GAAGAC 2 cut(s) 779, 852
BstXI CCANNNNNNTGG 1 cut(s) 253
BsuRI GGCC 4 cut(s) 5, 131, 152, 1047
BtgI CCRYGG 1 cut(s) 201
BtgZI GCGATG 2 cut(s) 510, 921
BtsCI GGATG 2 cut(s) 835, 985
BtsI GCAGTG 1 cut(s) 383
BtsIMutI CAGTG 2 cut(s) 383, 1057
BveI ACCTGC 1 cut(s) 644
Cac8I GCNNGC 8 cut(s) 98, 122, 129, 154, 176, 753, 757, 904
CaiI CAGNNNCTG 1 cut(s) 121
CfoI GCGC 6 cut(s) 96, 111, 136, 174, 301, 751
Cfr10I RCCGGY 3 cut(s) 250, 441, 902
Cfr13I GGNCC 2 cut(s) 190, 307
Cfr42I CCGCGG 1 cut(s) 204
CseI GACGC 2 cut(s) 52, 394
Csp6I GTAC 6 cut(s) 241, 367, 532, 567, 942, 1114
CviAII CATG 2 cut(s) 169, 962
CviQI GTAC 6 cut(s) 241, 367, 532, 567, 942, 1114
DdeI CTNAG 7 cut(s) 317, 347, 558, 667, 840, 972, 1028
DinI GGCGCC 1 cut(s) 95
DpnI GATC 6 cut(s) 19, 359, 549, 629, 825, 1143
DpnII GATC 6 cut(s) 17, 357, 547, 627, 823, 1141
EaeI YGGCCR 1 cut(s) 1045
Eam1104I CTCTTC 1 cut(s) 1121
EarI CTCTTC 1 cut(s) 1121
Eco31I GGTCTC 1 cut(s) 191
Eco47I GGWCC 2 cut(s) 190, 307
Eco88I CYCGRG 2 cut(s) 61, 88
EcoNI CCTNNNNNAGG 1 cut(s) 125
EcoRI GAATTC 1 cut(s) 457
EcoRII CCWGG 5 cut(s) 147, 309, 588, 711, 1137
EgeI GGCGCC 1 cut(s) 95
EheI GGCGCC 1 cut(s) 95
FaeI CATG 2 cut(s) 172, 965
FaqI GGGAC 2 cut(s) 338, 412
FatI CATG 2 cut(s) 168, 961
FauI CCCGC 1 cut(s) 690
FauNDI CATATG 2 cut(s) 390, 552
FbaI TGATCA 1 cut(s) 547
FblI GTMKAC 1 cut(s) 36
FokI GGATG 2 cut(s) 842, 992
GlaI GCGC 6 cut(s) 95, 110, 135, 173, 300, 750
GsaI CCCAGC 1 cut(s) 433
HaeII RGCGCY 2 cut(s) 97, 302
HaeIII GGCC 4 cut(s) 5, 131, 152, 1047
HapII CCGG 4 cut(s) 251, 322, 442, 903
HgaI GACGC 2 cut(s) 52, 394
HhaI GCGC 6 cut(s) 96, 111, 136, 174, 301, 751
Hin1I GRCGYC 2 cut(s) 44, 94
Hin1II CATG 2 cut(s) 172, 965
Hin6I GCGC 6 cut(s) 94, 109, 134, 172, 299, 749
HinP1I GCGC 6 cut(s) 94, 109, 134, 172, 299, 749
HincII GTYRAC 2 cut(s) 37, 54
HindII GTYRAC 2 cut(s) 37, 54
HinfI GANTC 3 cut(s) 80, 593, 947
HpaII CCGG 4 cut(s) 251, 322, 442, 903
HphI GGTGA 3 cut(s) 466, 487, 942
Hpy166II GTNNAC 2 cut(s) 37, 54
Hpy188I TCNGA 4 cut(s) 76, 318, 417, 878
Hpy188III TCNNGA 6 cut(s) 263, 274, 507, 827, 974, 1123
Hpy8I GTNNAC 2 cut(s) 37, 54
Hpy99I CGWCG 7 cut(s) 38, 46, 184, 293, 296, 410, 1019
HpyAV CCTTC 2 cut(s) 295, 464
HpyCH4III ACNGT 3 cut(s) 307, 354, 1061
HpyCH4IV ACGT 1 cut(s) 534
HpyF3I CTNAG 7 cut(s) 317, 347, 558, 667, 840, 972, 1028
HpySE526I ACGT 1 cut(s) 534
Hsp92I GRCGYC 2 cut(s) 44, 94
Hsp92II CATG 2 cut(s) 172, 965
HspAI GCGC 6 cut(s) 94, 109, 134, 172, 299, 749
KasI GGCGCC 1 cut(s) 93
KpnI GGTACC 1 cut(s) 570
KroI GCCGGC 1 cut(s) 902
KroNI GCCGGC 1 cut(s) 904
Ksp22I TGATCA 1 cut(s) 547
KspI CCGCGG 1 cut(s) 204
Kzo9I GATC 6 cut(s) 17, 357, 547, 627, 823, 1141
LmnI GCTCC 1 cut(s) 833
Lsp1109I GCAGC 6 cut(s) 136, 168, 585, 697, 977, 1146
LweI GCATC 5 cut(s) 174, 768, 845, 970, 1002
MaeII ACGT 1 cut(s) 534
MalI GATC 6 cut(s) 19, 359, 549, 629, 825, 1143
MboI GATC 6 cut(s) 17, 357, 547, 627, 823, 1141
MboII GAAGA 5 cut(s) 134, 779, 857, 996, 1138
MfeI CAATTG 1 cut(s) 212
MhlI GDGCHC 1 cut(s) 345
MlsI TGGCCA 1 cut(s) 1047
MluCI AATT 7 cut(s) 212, 329, 457, 490, 705, 866, 872
MluNI TGGCCA 1 cut(s) 1047
Mly113I GGCGCC 1 cut(s) 94
Mox20I TGGCCA 1 cut(s) 1047
MroNI GCCGGC 1 cut(s) 902
MroXI GAANNNNTTC 2 cut(s) 858, 963
MscI TGGCCA 1 cut(s) 1047
MseI TTAA 1 cut(s) 1156
Msp20I TGGCCA 1 cut(s) 1047
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 4 cut(s) 251, 322, 442, 903
MspR9I CCNGG 6 cut(s) 149, 311, 323, 590, 713, 1139
MunI CAATTG 1 cut(s) 212
MvaI CCWGG 5 cut(s) 149, 311, 590, 713, 1139
MvnI CGCG 6 cut(s) 134, 136, 174, 195, 203, 773
NaeI GCCGGC 1 cut(s) 904
NarI GGCGCC 1 cut(s) 94
NciI CCSGG 1 cut(s) 323
NdeI CATATG 2 cut(s) 390, 552
NdeII GATC 6 cut(s) 17, 357, 547, 627, 823, 1141
NgoMIV GCCGGC 1 cut(s) 902
NlaIII CATG 2 cut(s) 172, 965
NlaIV GGNNCC 2 cut(s) 95, 568
NspI RCATGY 1 cut(s) 965
NspV TTCGAA 1 cut(s) 83
PaqCI CACCTGC 1 cut(s) 644
PciI ACATGT 1 cut(s) 961
PcsI WCGNNNNNNNCGW 2 cut(s) 68, 288
PdiI GCCGGC 1 cut(s) 904
PdmI GAANNNNTTC 2 cut(s) 858, 963
PfeI GAWTC 3 cut(s) 80, 593, 947
PflMI CCANNNNNTGG 1 cut(s) 103
PluTI GGCGCC 1 cut(s) 97
Ppu21I YACGTR 1 cut(s) 535
PscI ACATGT 1 cut(s) 961
Psp6I CCWGG 5 cut(s) 147, 309, 588, 711, 1137
PspFI CCCAGC 1 cut(s) 429
PspGI CCWGG 5 cut(s) 147, 309, 588, 711, 1137
PspN4I GGNNCC 2 cut(s) 95, 568
PspPI GGNCC 2 cut(s) 190, 307
PstI CTGCAG 1 cut(s) 126
PstNI CAGNNNCTG 1 cut(s) 121
RsaI GTAC 6 cut(s) 242, 368, 533, 568, 943, 1115
RsaNI GTAC 6 cut(s) 241, 367, 532, 567, 942, 1114
SacII CCGCGG 1 cut(s) 204
SalI GTCGAC 1 cut(s) 35
SaqAI TTAA 1 cut(s) 1156
Sau3AI GATC 6 cut(s) 17, 357, 547, 627, 823, 1141
Sau96I GGNCC 2 cut(s) 190, 307
ScrFI CCNGG 6 cut(s) 149, 311, 323, 590, 713, 1139
SduI GDGCHC 1 cut(s) 345
SetI ASST 8 cut(s) 537, 591, 658, 690, 861, 919, 955, 1100
SfaNI GCATC 5 cut(s) 174, 768, 845, 970, 1002
SfcI CTRYAG 1 cut(s) 122
SfoI GGCGCC 1 cut(s) 95
Sfr303I CCGCGG 1 cut(s) 204
SfuI TTCGAA 1 cut(s) 83
SgrBI CCGCGG 1 cut(s) 204
SinI GGWCC 2 cut(s) 190, 307
Sse9I AATT 7 cut(s) 212, 329, 457, 490, 705, 866, 872
SspDI GGCGCC 1 cut(s) 93
StyD4I CCNGG 6 cut(s) 147, 309, 321, 588, 711, 1137
TaaI ACNGT 3 cut(s) 307, 354, 1061
TaiI ACGT 1 cut(s) 537
TaqI TCGA 7 cut(s) 36, 83, 182, 264, 408, 506, 852
TasI AATT 7 cut(s) 212, 329, 457, 490, 705, 866, 872
TatI WGTACW 1 cut(s) 1113
TauI GCSGC 5 cut(s) 134, 162, 165, 206, 424
TfiI GAWTC 3 cut(s) 80, 593, 947
Tru1I TTAA 1 cut(s) 1156
Tru9I TTAA 1 cut(s) 1156
TscAI CASTG 2 cut(s) 383, 1064
TseI GCWGC 6 cut(s) 124, 156, 573, 685, 990, 1134
TspGWI ACGGA 2 cut(s) 780, 1032
TspRI CASTG 2 cut(s) 383, 1064
Van91I CCANNNNNTGG 1 cut(s) 103
VpaK11BI GGWCC 2 cut(s) 190, 307
XagI CCTNNNNNAGG 1 cut(s) 125
XapI RAATTY 4 cut(s) 457, 490, 866, 872
XceI RCATGY 1 cut(s) 965
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XmiI GTMKAC 1 cut(s) 36
XmnI GAANNNNTTC 2 cut(s) 858, 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.