Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004309

Physical Location & Seq

Genomic Coordinates Forward (+)

36440772 .. 36442522

Gene Structure 1751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1252000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGGGATTGAATCAGGGTTTTTATTCGTTTTAAAAATCTCATCCCTTCAACTTCTGGTGGATCATTGGGTTCTATTGGGTATCAGCAGGTTATGTATTATTTTCCTGGGTTTTGATGTGTTTTTTGTCGTTTTCTGTGTTGCACTAGCATGTATGATTGGTATCGCAGTTTGTTGCTGTCTTCTGTGCATTTTTGCACTTTTATATGCTGTCACAGATCAGGATGGAGCATCTAAGGAAGACATCGAACAACTTTCAAAATTTAGATTCAGAAAAGTTGCCAATGAGAAAGTTGCCGATGATGTACAAGGTGGTGGAACAGATTCACCCATCGAACATGTTCTTTCTCAGGAGGATGCGGAGTGTTGCATCTGCCTTTCTTGTTATGATGATGGAGTGGAACTAAGGCAACTTCCTTGTGCCCACCATTTTCACTGTTCCTGCATCAACAAGTGGCTTTTTATCAACACTACATGTCCTCTCTACAAGTACAATATCTTGAAGAGTAGCAGCCAAAACCAAGGGGAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031090 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

178

Amino Acids

19.7

Weight (kDa)

4.95

Isoelectric Point (pI)

52.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	121 - 161	1.7e-10	Ring finger domain
zf-RING_11	PF17123	121 - 149	6.9e-07	RING-like zinc finger
zf-rbx1	PF12678	121 - 161	8.1e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12760 AT1G12760 AT1G63170
fragaria_vesca	FvH4_5g01740 FvH4_5g01740 FvH4_5g01740 FvH4_5g01740
malus_domestica	MD00G1110500.v1.1 MD04G1044500.v1.1 MD04G1064900.v1.1 MD10G1187400.v1.1 MD11G1252000.v1.1 MD13G1133300.v1.1
prunus_persica	Prupe.5G092900_v2.0.a1 Prupe.5G092900_v2.0.a1 Prupe.5G092900_v2.0.a1
pyrus_communis	pycom04g05870 pycom06g07380
rosa_chinensis	RchiOBHm_Chr7g0198981
rosa_laevigata	RLG00000003827
rosa_multiflora	Rmu_co8298497.1_g000001 Rmu_sc0006266.1_g000024 Rmu_sc0007328.1_g000010
rosa_roxburghii	Rroxscaffold_3G00257250
rosa_rugosa	Rorug07G0051800 Rorug07G0051900 Rorug07G0051900
rosa_samantha	Rh7AG174900 Rh7BG178100 Rh7CG184100 Rh7DG177500
rosa_wichuraiana	Rw7G015340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	78
AciI	CCGC	1 cut(s)	359
AclWI	GGATC	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	260
AfaI	GTAC	2 cut(s)	306, 491
AflIII	ACRYGT	2 cut(s)	337, 473
AgsI	TTSAA	4 cut(s)	11, 50, 258, 502
AjnI	CCWGG	1 cut(s)	105
AlwI	GGATC	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	510
ApoI	RAATTY	1 cut(s)	260
Asp700I	GAANNNNTTC	2 cut(s)	322, 339
AsuHPI	GGTGA	1 cut(s)	318
BaeGI	GKGCMC	1 cut(s)	424
BbsI	GAAGAC	2 cut(s)	173, 246
BbvI	GCAGC	1 cut(s)	522
BccI	CCATC	3 cut(s)	218, 338, 386
BciT130I	CCWGG	1 cut(s)	107
BfaI	CTAG	1 cut(s)	146
BfuAI	ACCTGC	1 cut(s)	78
BisI	GCNGC	1 cut(s)	511
BlsI	GCNGC	1 cut(s)	512
Bme1390I	CCNGG	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	107
BmsI	GCATC	4 cut(s)	239, 346, 378, 453
BpiI	GAAGAC	2 cut(s)	173, 246
BsaBI	GATNNNNATC	1 cut(s)	161
BsaJI	CCNNGG	2 cut(s)	106, 520
Bse8I	GATNNNNATC	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	2 cut(s)	106, 520
BseGI	GGATG	3 cut(s)	41, 229, 361
BseJI	GATNNNNATC	1 cut(s)	161
BseMII	CTCAG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	424
BseXI	GCAGC	1 cut(s)	522
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp1407I	TGTACA	1 cut(s)	304
Bsp143I	GATC	2 cut(s)	61, 217
BspACI	CCGC	1 cut(s)	359
BspCNI	CTCAG	1 cut(s)	361
BspMI	ACCTGC	1 cut(s)	78
BspPI	GGATC	1 cut(s)	69
BsrGI	TGTACA	1 cut(s)	304
BssECI	CCNNGG	2 cut(s)	106, 520
BssMI	GATC	2 cut(s)	61, 217
BssT1I	CCWWGG	1 cut(s)	520
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	1 cut(s)	437
Bst6I	CTCTTC	1 cut(s)	497
BstAUI	TGTACA	1 cut(s)	304
BstDEI	CTNAG	3 cut(s)	234, 348, 404
BstF5I	GGATG	3 cut(s)	41, 229, 361
BstKTI	GATC	2 cut(s)	64, 220
BstMBI	GATC	2 cut(s)	61, 217
BstNI	CCWGG	1 cut(s)	107
BstNSI	RCATGY	3 cut(s)	153, 341, 477
BstSCI	CCNGG	1 cut(s)	105
BstSLI	GKGCMC	1 cut(s)	424
BstV1I	GCAGC	1 cut(s)	522
BstV2I	GAAGAC	2 cut(s)	173, 246
BtsCI	GGATG	3 cut(s)	41, 229, 361
BtsIMutI	CAGTG	1 cut(s)	433
BveI	ACCTGC	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	305, 490
CviAII	CATG	3 cut(s)	150, 338, 474
CviJI	RGCY	2 cut(s)	457, 513
CviKI_1	RGCY	2 cut(s)	457, 513
CviQI	GTAC	2 cut(s)	305, 490
DdeI	CTNAG	3 cut(s)	234, 348, 404
DpnI	GATC	2 cut(s)	63, 219
DpnII	GATC	2 cut(s)	61, 217
DraI	TTTAAA	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
Eco130I	CCWWGG	1 cut(s)	520
EcoRII	CCWGG	1 cut(s)	105
EcoT14I	CCWWGG	1 cut(s)	520
ErhI	CCWWGG	1 cut(s)	520
FaeI	CATG	3 cut(s)	153, 341, 477
FaiI	YATR	8 cut(s)	94, 151, 155, 205, 207, 339, 387, 475
FatI	CATG	3 cut(s)	149, 337, 473
Fnu4HI	GCNGC	1 cut(s)	511
FokI	GGATG	3 cut(s)	28, 236, 368
Fsp4HI	GCNGC	1 cut(s)	511
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	1 cut(s)	511
Hin1II	CATG	3 cut(s)	153, 341, 477
HinfI	GANTC	3 cut(s)	11, 267, 323
HphI	GGTGA	1 cut(s)	318
Hpy188I	TCNGA	1 cut(s)	272
Hpy188III	TCNNGA	3 cut(s)	221, 350, 499
HpyAV	CCTTC	1 cut(s)	56
HpyCH4III	ACNGT	1 cut(s)	437
HpyCH4V	TGCA	5 cut(s)	143, 189, 197, 369, 444
HpyF3I	CTNAG	3 cut(s)	234, 348, 404
Hsp92II	CATG	3 cut(s)	153, 341, 477
Kzo9I	GATC	2 cut(s)	61, 217
LmnI	GCTCC	1 cut(s)	227
LpnPI	CCDG	7 cut(s)	41, 73, 92, 119, 206, 335, 454
Lsp1109I	GCAGC	1 cut(s)	522
LweI	GCATC	4 cut(s)	239, 346, 378, 453
MaeI	CTAG	1 cut(s)	146
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	2 cut(s)	63, 219
MboI	GATC	2 cut(s)	61, 217
MboII	GAAGA	3 cut(s)	173, 251, 514
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	1 cut(s)	260
MnlI	CCTC	2 cut(s)	346, 489
MroXI	GAANNNNTTC	2 cut(s)	322, 339
MseI	TTAA	1 cut(s)	32
MslI	CAYNNNNRTG	1 cut(s)	148
MspR9I	CCNGG	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	107
NdeII	GATC	2 cut(s)	61, 217
NlaIII	CATG	3 cut(s)	153, 341, 477
NmuCI	GTSAC	1 cut(s)	211
NspI	RCATGY	3 cut(s)	153, 341, 477
PciI	ACATGT	2 cut(s)	337, 473
PdmI	GAANNNNTTC	2 cut(s)	322, 339
PfeI	GAWTC	3 cut(s)	11, 267, 323
PkrI	GCNGC	1 cut(s)	512
PscI	ACATGT	2 cut(s)	337, 473
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
RsaI	GTAC	2 cut(s)	306, 491
RsaNI	GTAC	2 cut(s)	305, 490
RseI	CAYNNNNRTG	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	1 cut(s)	511
Sau3AI	GATC	2 cut(s)	61, 217
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	1 cut(s)	424
SetI	ASST	2 cut(s)	92, 313
SfaNI	GCATC	4 cut(s)	239, 346, 378, 453
SmiMI	CAYNNNNRTG	1 cut(s)	148
Sse9I	AATT	1 cut(s)	260
SsiI	CCGC	1 cut(s)	359
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	105
StyI	CCWWGG	1 cut(s)	520
TaaI	ACNGT	1 cut(s)	437
TaqI	TCGA	2 cut(s)	246, 333
TasI	AATT	1 cut(s)	260
TatI	WGTACW	2 cut(s)	304, 489
TfiI	GAWTC	3 cut(s)	11, 267, 323
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	1 cut(s)	440
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	510
Tsp45I	GTSAC	1 cut(s)	211
TspRI	CASTG	1 cut(s)	440
XapI	RAATTY	1 cut(s)	260
XceI	RCATGY	3 cut(s)	153, 341, 477
XmnI	GAANNNNTTC	2 cut(s)	322, 339
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.