Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004309

Physical Location & Seq

Genomic Coordinates Forward (+)

1102101 .. 1105466

Gene Structure 3366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01740.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCTTCTTCTCCACACAACCGATCCGCCGACGACATCATCTGGAACTTCGCTTTCGTCGTCGTCGCCGCGACGGTTCTGGTTCTCAGCCGGTCAGAGTCGCCGGAGATGCCGCTGAGGCTTTGGATTGTGGGATACGCTATGCAATGCTTGCTGCATATGGTTTGTGTATGTGTCGAGTTCAAACGGCGACAGAATCGGCGGTTTTTGGGGGTGAATCCCGGTGACGGAGGGATCGGGAGCGCCGGAAATTCCAGCCCTAGGAGAGAGGACTCGTCACAGTACTCATCACAGTACGTGTCTTTGGCTGATCACTTGAATGAGGAGAGCACCGGAAGTGTTGCCAAGCATCTAGAATCTGCAAATACAATGTTTTCGTTCATCTGGTGGATCATTGGATTCTACTGGGTATCAGCAGGCGGGCAAACTTTGGCACGCGCCTCCCCTCAGCTTTACTGGCTGTGCATAATTTTTCTGGGTTTTGATGTGTTTTTTGTCGTCTTCTGTGTTGCACTGGCTTGCATCATCGGGATCGCTGTGTGTTGCTGTCTTCCATGTATTATTGCACTTCTATACGCTGTGGCAGACCAGGATGGCGCATCTAAGGAAGATATTGAACAATTATCAAAATTCAAATTCCGACGAGTTAGTAATGAGAAAATTGCAGCCGGTGAACAAGGACCTCATGGAGGAGTAATGACTGAATGTGGAACAGATTCACCCATTGAGCATGTTCTTTCACCAGAAGACGCGGAGTGTTGCATCTGCCTCTCTTCTTATGATGACGGTGCGGAGCTAAGGCAACTTCCTTGTGGTCACCATTTTCACTGTTCCTGCATTGATAAGTGGCTTTTCATTAATGCTACTTGTCCTCTCTGCAAGTACAATATTTTGAAGAGTAGCAGCAATGAGCAAGGCGAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031090 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

309

Amino Acids

33.95

Weight (kDa)

5.35

Isoelectric Point (pI)

62.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	329 - 372	2.3e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	330 - 372	2e-14	Ring finger domain
zf-RING_11	PF17123	330 - 358	8.4e-09	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12760 AT1G12760 AT1G63170
fragaria_vesca	FvH4_5g01740 FvH4_5g01740 FvH4_5g01740 FvH4_5g01740
malus_domestica	MD00G1110500.v1.1 MD04G1044500.v1.1 MD04G1064900.v1.1 MD10G1187400.v1.1 MD11G1252000.v1.1 MD13G1133300.v1.1
prunus_persica	Prupe.5G092900_v2.0.a1 Prupe.5G092900_v2.0.a1 Prupe.5G092900_v2.0.a1
pyrus_communis	pycom04g05870 pycom06g07380
rosa_chinensis	RchiOBHm_Chr7g0198981
rosa_laevigata	RLG00000003827
rosa_multiflora	Rmu_co8298497.1_g000001 Rmu_sc0006266.1_g000024 Rmu_sc0007328.1_g000010
rosa_roxburghii	Rroxscaffold_3G00257250
rosa_rugosa	Rorug07G0051800 Rorug07G0051900 Rorug07G0051900
rosa_samantha	Rh7AG174900 Rh7BG178100 Rh7CG184100 Rh7DG177500
rosa_wichuraiana	Rw7G015340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	71, 438, 752
AciI	CCGC	7 cut(s)	27, 69, 113, 202, 420, 752, 791
AclWI	GGATC	4 cut(s)	18, 242, 398, 539
AcsI	RAATTY	3 cut(s)	250, 629, 635
AfaI	GTAC	3 cut(s)	284, 296, 884
AfiI	CCNNNNNNNGG	3 cut(s)	227, 261, 689
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	5 cut(s)	184, 319, 617, 634, 895
AjnI	CCWGG	1 cut(s)	588
AluBI	AGCT	2 cut(s)	451, 796
AluI	AGCT	2 cut(s)	451, 796
Alw21I	GWGCWC	1 cut(s)	332
AlwI	GGATC	4 cut(s)	18, 242, 398, 539
ApeKI	GCWGC	3 cut(s)	154, 665, 903
ApoI	RAATTY	3 cut(s)	250, 629, 635
AseI	ATTAAT	1 cut(s)	858
Asp700I	GAANNNNTTC	1 cut(s)	715
AspA2I	CCTAGG	1 cut(s)	260
AspLEI	GCGC	3 cut(s)	245, 440, 599
AspS9I	GGNCC	1 cut(s)	680
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	6 cut(s)	226, 236, 683, 711, 732, 809
AvaII	GGWCC	1 cut(s)	680
AvrII	CCTAGG	1 cut(s)	260
BbsI	GAAGAC	3 cut(s)	493, 542, 753
Bbv12I	GWGCWC	1 cut(s)	332
BbvCI	CCTCAGC	2 cut(s)	116, 447
BbvI	GCAGC	3 cut(s)	141, 677, 915
BccI	CCATC	1 cut(s)	587
BceAI	ACGGC	1 cut(s)	203
BciT130I	CCWGG	1 cut(s)	590
BciVI	GTATCC	1 cut(s)	128
BclI	TGATCA	1 cut(s)	310
BcnI	CCSGG	1 cut(s)	222
BfaI	CTAG	2 cut(s)	261, 353
BfoI	RGCGCY	1 cut(s)	246
BfuI	GTATCC	1 cut(s)	128
BglI	GCCNNNNNGGC	1 cut(s)	118
BisI	GCNGC	5 cut(s)	69, 113, 155, 666, 904
BlnI	CCTAGG	1 cut(s)	260
BlsI	GCNGC	5 cut(s)	70, 114, 156, 667, 905
BmcAI	AGTACT	1 cut(s)	284
Bme1390I	CCNGG	2 cut(s)	222, 590
Bme18I	GGWCC	1 cut(s)	680
BmgT120I	GGNCC	1 cut(s)	680
BmrFI	CCNGG	2 cut(s)	222, 590
BmrI	ACTGGG	1 cut(s)	415
BmsI	GCATC	5 cut(s)	99, 358, 531, 608, 771
BmuI	ACTGGG	1 cut(s)	415
BpiI	GAAGAC	3 cut(s)	493, 542, 753
Bpu10I	CCTNAGC	3 cut(s)	116, 447, 797
BpuMI	CCSGG	1 cut(s)	222
BsaAI	YACGTR	1 cut(s)	298
BsaJI	CCNNGG	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	3 cut(s)	227, 261, 689
Bse118I	RCCGGY	2 cut(s)	90, 668
Bse1I	ACTGG	3 cut(s)	410, 461, 519
Bse3DI	GCAATG	2 cut(s)	152, 913
BseBI	CCWGG	1 cut(s)	590
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	1 cut(s)	598
BseLI	CCNNNNNNNGG	3 cut(s)	227, 261, 689
BseMI	GCAATG	2 cut(s)	152, 913
BseMII	CTCAG	3 cut(s)	100, 107, 461
BseNI	ACTGG	3 cut(s)	410, 461, 519
BseRI	GAGGAG	2 cut(s)	338, 705
BseXI	GCAGC	3 cut(s)	141, 677, 915
Bsh1236I	CGCG	3 cut(s)	71, 438, 752
BsiHKAI	GWGCWC	1 cut(s)	332
BsiSI	CCGG	6 cut(s)	91, 104, 222, 246, 333, 669
BslI	CCNNNNNNNGG	3 cut(s)	227, 261, 689
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp143I	GATC	5 cut(s)	23, 234, 310, 390, 531
BspACI	CCGC	7 cut(s)	27, 69, 113, 202, 420, 752, 791
BspCNI	CTCAG	3 cut(s)	99, 108, 460
BspFNI	CGCG	3 cut(s)	71, 438, 752
BspPI	GGATC	4 cut(s)	18, 242, 398, 539
BsrDI	GCAATG	2 cut(s)	152, 913
BsrFI	RCCGGY	2 cut(s)	90, 668
BsrI	ACTGG	3 cut(s)	410, 461, 519
BssAI	RCCGGY	2 cut(s)	90, 668
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	5 cut(s)	23, 234, 310, 390, 531
BssT1I	CCWWGG	1 cut(s)	260
Bst2UI	CCWGG	1 cut(s)	590
Bst4CI	ACNGT	5 cut(s)	76, 282, 294, 788, 830
Bst6I	CTCTTC	2 cut(s)	778, 890
BstAPI	GCANNNNNTGC	1 cut(s)	151
BstBAI	YACGTR	1 cut(s)	298
BstC8I	GCNNGC	5 cut(s)	152, 418, 422, 436, 520
BstDEI	CTNAG	5 cut(s)	86, 116, 447, 603, 797
BstEII	GGTNACC	1 cut(s)	815
BstENI	CCTNNNNNAGG	1 cut(s)	687
BstF5I	GGATG	1 cut(s)	598
BstFNI	CGCG	3 cut(s)	71, 438, 752
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	3 cut(s)	245, 440, 599
BstKTI	GATC	5 cut(s)	26, 237, 313, 393, 534
BstMBI	GATC	5 cut(s)	23, 234, 310, 390, 531
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 118, 151, 457
BstNI	CCWGG	1 cut(s)	590
BstNSI	RCATGY	1 cut(s)	734
BstPI	GGTNACC	1 cut(s)	815
BstSCI	CCNGG	2 cut(s)	220, 588
BstUI	CGCG	3 cut(s)	71, 438, 752
BstV1I	GCAGC	3 cut(s)	141, 677, 915
BstV2I	GAAGAC	3 cut(s)	493, 542, 753
BsuI	GTATCC	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	598
BtsIMutI	CAGTG	2 cut(s)	512, 826
Cac8I	GCNNGC	5 cut(s)	152, 418, 422, 436, 520
CfoI	GCGC	3 cut(s)	245, 440, 599
Cfr10I	RCCGGY	2 cut(s)	90, 668
Cfr13I	GGNCC	1 cut(s)	680
CseI	GACGC	1 cut(s)	758
Csp6I	GTAC	3 cut(s)	283, 295, 883
CviAII	CATG	3 cut(s)	555, 686, 731
CviQI	GTAC	3 cut(s)	283, 295, 883
DdeI	CTNAG	5 cut(s)	86, 116, 447, 603, 797
DpnI	GATC	5 cut(s)	25, 236, 312, 392, 533
DpnII	GATC	5 cut(s)	23, 234, 310, 390, 531
Eam1104I	CTCTTC	2 cut(s)	778, 890
EarI	CTCTTC	2 cut(s)	778, 890
EciI	GGCGGA	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	680
Eco91I	GGTNACC	1 cut(s)	815
EcoNI	CCTNNNNNAGG	1 cut(s)	687
EcoO109I	RGGNCCY	1 cut(s)	680
EcoO65I	GGTNACC	1 cut(s)	815
EcoRII	CCWGG	1 cut(s)	588
EcoT14I	CCWWGG	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	3 cut(s)	558, 689, 734
FatI	CATG	3 cut(s)	554, 685, 730
FauI	CCCGC	1 cut(s)	413
FauNDI	CATATG	1 cut(s)	159
FbaI	TGATCA	1 cut(s)	310
Fnu4HI	GCNGC	5 cut(s)	69, 113, 155, 666, 904
FokI	GGATG	1 cut(s)	605
Fsp4HI	GCNGC	5 cut(s)	69, 113, 155, 666, 904
FspBI	CTAG	2 cut(s)	261, 353
GlaI	GCGC	3 cut(s)	244, 439, 598
GluI	GCNGC	5 cut(s)	69, 113, 155, 666, 904
HaeII	RGCGCY	1 cut(s)	246
HapII	CCGG	6 cut(s)	91, 104, 222, 246, 333, 669
HgaI	GACGC	1 cut(s)	758
HhaI	GCGC	3 cut(s)	245, 440, 599
Hin1II	CATG	3 cut(s)	558, 689, 734
Hin6I	GCGC	3 cut(s)	243, 438, 597
HinP1I	GCGC	3 cut(s)	243, 438, 597
HinfI	GANTC	7 cut(s)	98, 196, 217, 272, 356, 399, 716
HpaII	CCGG	6 cut(s)	91, 104, 222, 246, 333, 669
HphI	GGTGA	6 cut(s)	226, 236, 683, 711, 732, 809
Hpy166II	GTNNAC	1 cut(s)	674
Hpy188I	TCNGA	2 cut(s)	97, 641
Hpy188III	TCNNGA	4 cut(s)	43, 238, 353, 529
Hpy8I	GTNNAC	1 cut(s)	674
Hpy99I	CGWCG	6 cut(s)	35, 62, 65, 68, 76, 645
HpyCH4III	ACNGT	5 cut(s)	76, 282, 294, 788, 830
HpyCH4IV	ACGT	1 cut(s)	297
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 118, 151, 457
HpyF3I	CTNAG	5 cut(s)	86, 116, 447, 603, 797
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	3 cut(s)	558, 689, 734
HspAI	GCGC	3 cut(s)	243, 438, 597
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	5 cut(s)	23, 234, 310, 390, 531
LmnI	GCTCC	2 cut(s)	240, 793
Lsp1109I	GCAGC	3 cut(s)	141, 677, 915
LweI	GCATC	5 cut(s)	99, 358, 531, 608, 771
MaeI	CTAG	2 cut(s)	261, 353
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	3 cut(s)	224, 276, 815
MalI	GATC	5 cut(s)	25, 236, 312, 392, 533
MboI	GATC	5 cut(s)	23, 234, 310, 390, 531
MboII	GAAGA	6 cut(s)	493, 542, 620, 758, 765, 907
MhlI	GDGCHC	1 cut(s)	332
MluCI	AATT	6 cut(s)	250, 468, 620, 629, 635, 660
MlyI	GAGTC	2 cut(s)	107, 266
MmeI	TCCRAC	1 cut(s)	664
MroXI	GAANNNNTTC	1 cut(s)	715
MseI	TTAA	1 cut(s)	858
MslI	CAYNNNNRTG	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	115
MspI	CCGG	6 cut(s)	91, 104, 222, 246, 333, 669
MspR9I	CCNGG	2 cut(s)	222, 590
MvaI	CCWGG	1 cut(s)	590
MvnI	CGCG	3 cut(s)	71, 438, 752
MwoI	GCNNNNNNNGC	4 cut(s)	109, 118, 151, 457
NciI	CCSGG	1 cut(s)	222
NdeI	CATATG	1 cut(s)	159
NdeII	GATC	5 cut(s)	23, 234, 310, 390, 531
NlaIII	CATG	3 cut(s)	558, 689, 734
NmuCI	GTSAC	3 cut(s)	224, 276, 815
NspI	RCATGY	1 cut(s)	734
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PdmI	GAANNNNTTC	1 cut(s)	715
PfeI	GAWTC	5 cut(s)	196, 217, 356, 399, 716
PkrI	GCNGC	5 cut(s)	70, 114, 156, 667, 905
PleI	GAGTC	2 cut(s)	106, 266
PpsI	GAGTC	2 cut(s)	106, 266
Ppu21I	YACGTR	1 cut(s)	298
PpuMI	RGGWCCY	1 cut(s)	680
PshBI	ATTAAT	1 cut(s)	858
Psp5II	RGGWCCY	1 cut(s)	680
Psp6I	CCWGG	1 cut(s)	588
PspEI	GGTNACC	1 cut(s)	815
PspGI	CCWGG	1 cut(s)	588
PspPI	GGNCC	1 cut(s)	680
PspPPI	RGGWCCY	1 cut(s)	680
RsaI	GTAC	3 cut(s)	284, 296, 884
RsaNI	GTAC	3 cut(s)	283, 295, 883
RseI	CAYNNNNRTG	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	858
SatI	GCNGC	5 cut(s)	69, 113, 155, 666, 904
Sau3AI	GATC	5 cut(s)	23, 234, 310, 390, 531
Sau96I	GGNCC	1 cut(s)	680
ScaI	AGTACT	1 cut(s)	284
SchI	GAGTC	2 cut(s)	107, 266
ScrFI	CCNGG	2 cut(s)	222, 590
SduI	GDGCHC	1 cut(s)	332
SetI	ASST	4 cut(s)	300, 453, 685, 798
SfaNI	GCATC	5 cut(s)	99, 358, 531, 608, 771
SinI	GGWCC	1 cut(s)	680
SmiMI	CAYNNNNRTG	1 cut(s)	318
Sse9I	AATT	6 cut(s)	250, 468, 620, 629, 635, 660
SsiI	CCGC	7 cut(s)	27, 69, 113, 202, 420, 752, 791
SspI	AATATT	1 cut(s)	889
SspMI	CTAG	2 cut(s)	261, 353
StyD4I	CCNGG	2 cut(s)	220, 588
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	5 cut(s)	76, 282, 294, 788, 830
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	1 cut(s)	177
TasI	AATT	6 cut(s)	250, 468, 620, 629, 635, 660
TatI	WGTACW	2 cut(s)	282, 882
TauI	GCSGC	2 cut(s)	71, 115
TfiI	GAWTC	5 cut(s)	196, 217, 356, 399, 716
Tru1I	TTAA	1 cut(s)	858
Tru9I	TTAA	1 cut(s)	858
TscAI	CASTG	2 cut(s)	519, 833
TseFI	GTSAC	3 cut(s)	224, 276, 815
TseI	GCWGC	3 cut(s)	154, 665, 903
Tsp45I	GTSAC	3 cut(s)	224, 276, 815
TspDTI	ATGAA	2 cut(s)	370, 844
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	2 cut(s)	519, 833
VpaK11BI	GGWCC	1 cut(s)	680
VspI	ATTAAT	1 cut(s)	858
XagI	CCTNNNNNAGG	1 cut(s)	687
XapI	RAATTY	3 cut(s)	250, 629, 635
XbaI	TCTAGA	1 cut(s)	352
XceI	RCATGY	1 cut(s)	734
XmaJI	CCTAGG	1 cut(s)	260
XmnI	GAANNNNTTC	1 cut(s)	715
XspI	CTAG	2 cut(s)	261, 353
ZrmI	AGTACT	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.