MD00G1110500.v1.1

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Reverse (-)
23086182 .. 23089641
3460 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1110500.v1.1.491

Sequence Viewer

Length: 1155 bp
ATGGCCTCTCCGAACCGATCCTCGGAGGACATCGTCGACACGATGCCGTTGATTAGCAACTCGGGCGGGTCGTCCGACGAGTCGAACTCGGGGCGCCAGCAATTAGCGCGCCGACAGAGCCTGCGGCAGGCCGCGAGGTTTCTGCGCCAGGCCAGCAGCCGCCGCCTCATGCGCGAGCCGTCGATGCTGGTCCGGGAGACCGCGGCGGAGCAATTGGAGGAGAGGCAGAGCGATTGGGCGTACTCCAAGCCGGTGGTGGTTCTCGACATCATCTGGAACTTCGCCTTCGTCGTCGTGGCGGCGACTGTTCTGGTTCTTAGCCGGTACGAACTGCCGGATATGCCCCTGAGGCTATGGATCGTGGGGTACGCGTTGCAGTGCGTGGTGCATATGGTTTGTGTTTGCGTCGAGTTTCGGAGGCGGCAGTGCCGGCAGAGAAGCCGGTTTTCGGGGGTGAATTCTGGGGAGGAAGGGGTGGGGAGTGTTGGGAATTTGAGTTCTGGGTTGAGAGAGGGGGATTCGTCATCTCAGTACGTGTCGTTGGCTGATCATATGACTGAGGAGGGTACCAGTGTTGCTAAGCACCTGGAATCTGCAAATACAATGTTTTCGTTTATCTGGTGGATCATTGGGTTTTATTGGGTATCGGCAGGTGGTCAATCTTTAGCGCGCGCCTCCCCTCAGCTTTACTGGTTATGTATAATTTTCCTGGGTTTTGATGTGTTTTTTGTCGTTTTCTGTGTTGCACTGGCATGTATCATTGGTATCGCAGTTTGTTGCTGTCTTCCGTGCATTATTGCACTTTTATATGCTGTCGCAGATCAGGATGGAGCATCTAAGGAAGACATCGAACAACTTTCAAAATTCAAATTCAGAAAAGTTGCCAATGAGAAAGTTGCCGGCAATGTACTAGGTGGAGGAGTAATGACTGAATGTGGAACAGATTCACCGATTGAACATGTTCTTTCTCAGGAGGATGCGGAGTGCTGCATCTGCCTTTCTTCTTATGACGATGGAGTGGAACTAAGGCAACTTCCTTGTAGCCACCATTTTCACTGTTCCTGCATTGACAAGTGGCTTTTTATCAACGCTACCTGTCCTCTCTGCAAGTACAATATCTTGAAGAGTAGCAGCCAGGATCAAGGGGAAGTGTAG

Protein Analysis

385

Amino Acids

42.59

Weight (kDa)

5.48

Isoelectric Point (pI)

61.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 327 - 370 1.4e-07 RING-H2 zinc finger domain
zf-RING_2 PF13639 328 - 370 1.6e-13 Ring finger domain
zf-RING_11 PF17123 328 - 356 9.2e-09 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 641
Acc36I ACCTGC 1 cut(s) 641
Acc65I GGTACC 1 cut(s) 566
AccB1I GGYRCC 2 cut(s) 93, 566
AccI GTMKAC 1 cut(s) 36
AccII CGCG 7 cut(s) 109, 134, 174, 203, 371, 670, 672
AclWI GGATC 4 cut(s) 12, 365, 632, 1146
AcsI RAATTY 4 cut(s) 457, 490, 863, 869
AcyI GRCGYC 1 cut(s) 94
AfaI GTAC 7 cut(s) 242, 326, 368, 533, 568, 909, 1112
AfiI CCNNNNNNNGG 3 cut(s) 22, 127, 448
AflIII ACRYGT 3 cut(s) 369, 534, 958
AgsI TTSAA 4 cut(s) 861, 868, 956, 1123
AjnI CCWGG 4 cut(s) 147, 585, 708, 1134
AloI GAACNNNNNNTCC 2 cut(s) 481, 513
AluBI AGCT 1 cut(s) 685
AluI AGCT 1 cut(s) 685
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 4 cut(s) 12, 365, 632, 1146
AlwNI CAGNNNCTG 1 cut(s) 121
Ama87I CYCGRG 2 cut(s) 61, 88
AoxI GGCC 3 cut(s) 3, 129, 150
ApeKI GCWGC 3 cut(s) 156, 987, 1131
ApoI RAATTY 4 cut(s) 457, 490, 863, 869
Asp700I GAANNNNTTC 2 cut(s) 943, 960
Asp718I GGTACC 1 cut(s) 566
AspLEI GCGC 8 cut(s) 96, 109, 111, 147, 174, 670, 672, 674
AspS9I GGNCC 1 cut(s) 190
AsuC2I CCSGG 1 cut(s) 194
AsuHPI GGTGA 2 cut(s) 466, 939
AvaI CYCGRG 2 cut(s) 61, 88
AvaII GGWCC 1 cut(s) 190
AxyI CCTNAGG 1 cut(s) 347
BaeI ACNNNNGTAYC 2 cut(s) 558, 591
BanI GGYRCC 2 cut(s) 93, 566
BbsI GAAGAC 2 cut(s) 776, 849
BbvCI CCTCAGC 1 cut(s) 681
BbvI GCAGC 3 cut(s) 168, 974, 1143
BccI CCATC 2 cut(s) 821, 1007
BceAI ACGGC 2 cut(s) 31, 163
BcgI CGANNNNNNTGC 2 cut(s) 124, 158
BciT130I CCWGG 4 cut(s) 149, 587, 710, 1136
BclI TGATCA 1 cut(s) 547
BcnI CCSGG 1 cut(s) 194
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 1 cut(s) 911
BfoI RGCGCY 1 cut(s) 97
BfuAI ACCTGC 1 cut(s) 641
BglI GCCNNNNNGGC 1 cut(s) 349
BlpI GCTNAGC 1 cut(s) 579
Bme1390I CCNGG 5 cut(s) 149, 194, 587, 710, 1136
Bme18I GGWCC 1 cut(s) 190
BmeT110I CYCGRG 2 cut(s) 61, 88
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 2 cut(s) 95, 568
BmrFI CCNGG 5 cut(s) 149, 194, 587, 710, 1136
BmsI GCATC 5 cut(s) 33, 174, 842, 967, 999
BpiI GAAGAC 2 cut(s) 776, 849
BplI GAGNNNNNCTC 2 cut(s) 71, 103
Bpu10I CCTNAGC 1 cut(s) 681
Bpu1102I GCTNAGC 1 cut(s) 579
BpuMI CCSGG 1 cut(s) 194
BsaAI YACGTR 1 cut(s) 535
BsaHI GRCGYC 1 cut(s) 94
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 3 cut(s) 21, 201, 709
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 127, 448
Bse118I RCCGGY 5 cut(s) 250, 321, 429, 441, 899
Bse1I ACTGG 3 cut(s) 570, 695, 753
Bse21I CCTNAGG 1 cut(s) 347
Bse3DI GCAATG 1 cut(s) 910
BseBI CCWGG 4 cut(s) 149, 587, 710, 1136
BseDI CCNNGG 3 cut(s) 21, 201, 709
BseGI GGATG 2 cut(s) 832, 982
BseLI CCNNNNNNNGG 3 cut(s) 22, 127, 448
BseMI GCAATG 1 cut(s) 910
BseMII CTCAG 5 cut(s) 338, 542, 549, 695, 983
BseNI ACTGG 3 cut(s) 570, 695, 753
BsePI GCGCGC 3 cut(s) 107, 668, 670
BseRI GAGGAG 3 cut(s) 233, 575, 933
BseXI GCAGC 3 cut(s) 168, 974, 1143
Bsh1236I CGCG 7 cut(s) 109, 134, 174, 203, 371, 670, 672
BshFI GGCC 3 cut(s) 5, 131, 152
BshNI GGYRCC 2 cut(s) 93, 566
BsiHKCI CYCGRG 2 cut(s) 61, 88
BsiSI CCGG 7 cut(s) 193, 251, 322, 335, 430, 442, 900
BslI CCNNNNNNNGG 3 cut(s) 22, 127, 448
BsmAI GTCTC 1 cut(s) 191
BsnI GGCC 3 cut(s) 5, 131, 152
Bso31I GGTCTC 1 cut(s) 191
BsoBI CYCGRG 2 cut(s) 61, 88
Bsp143I GATC 6 cut(s) 17, 357, 547, 624, 820, 1138
Bsp1720I GCTNAGC 1 cut(s) 579
BspANI GGCC 3 cut(s) 5, 131, 152
BspCNI CTCAG 5 cut(s) 339, 541, 550, 694, 982
BspFNI CGCG 7 cut(s) 109, 134, 174, 203, 371, 670, 672
BspLI GGNNCC 2 cut(s) 95, 568
BspMI ACCTGC 1 cut(s) 641
BspPI GGATC 4 cut(s) 12, 365, 632, 1146
BspT107I GGYRCC 2 cut(s) 93, 566
BspTNI GGTCTC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 910
BsrFI RCCGGY 5 cut(s) 250, 321, 429, 441, 899
BsrI ACTGG 3 cut(s) 570, 695, 753
BssAI RCCGGY 5 cut(s) 250, 321, 429, 441, 899
BssECI CCNNGG 3 cut(s) 21, 201, 709
BssHII GCGCGC 3 cut(s) 107, 668, 670
BssMI GATC 6 cut(s) 17, 357, 547, 624, 820, 1138
BssNI GRCGYC 1 cut(s) 94
Bst2UI CCWGG 4 cut(s) 149, 587, 710, 1136
Bst4CI ACNGT 2 cut(s) 307, 1058
Bst6I CTCTTC 1 cut(s) 1118
BstACI GRCGYC 1 cut(s) 94
BstBAI YACGTR 1 cut(s) 535
BstDEI CTNAG 9 cut(s) 317, 347, 528, 558, 579, 681, 837, 969, 1025
BstDSI CCRYGG 1 cut(s) 201
BstENI CCTNNNNNAGG 1 cut(s) 125
BstF5I GGATG 2 cut(s) 832, 982
BstFNI CGCG 7 cut(s) 109, 134, 174, 203, 371, 670, 672
BstH2I RGCGCY 1 cut(s) 97
BstHHI GCGC 8 cut(s) 96, 109, 111, 147, 174, 670, 672, 674
BstKTI GATC 6 cut(s) 20, 360, 550, 627, 823, 1141
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 6 cut(s) 17, 357, 547, 624, 820, 1138
BstNI CCWGG 4 cut(s) 149, 587, 710, 1136
BstNSI RCATGY 2 cut(s) 756, 962
BstSCI CCNGG 5 cut(s) 147, 192, 585, 708, 1134
BstUI CGCG 7 cut(s) 109, 134, 174, 203, 371, 670, 672
BstV1I GCAGC 3 cut(s) 168, 974, 1143
BstV2I GAAGAC 2 cut(s) 776, 849
BstXI CCANNNNNNTGG 1 cut(s) 253
Bsu36I CCTNAGG 1 cut(s) 347
BsuRI GGCC 3 cut(s) 5, 131, 152
BtgI CCRYGG 1 cut(s) 201
BtsCI GGATG 2 cut(s) 832, 982
BtsI GCAGTG 2 cut(s) 383, 431
BtsIMutI CAGTG 5 cut(s) 383, 431, 577, 746, 1054
BveI ACCTGC 1 cut(s) 641
CaiI CAGNNNCTG 1 cut(s) 121
CfoI GCGC 8 cut(s) 96, 109, 111, 147, 174, 670, 672, 674
Cfr10I RCCGGY 5 cut(s) 250, 321, 429, 441, 899
Cfr13I GGNCC 1 cut(s) 190
Cfr42I CCGCGG 1 cut(s) 204
CseI GACGC 1 cut(s) 394
Csp6I GTAC 7 cut(s) 241, 325, 367, 532, 567, 908, 1111
CviAII CATG 3 cut(s) 169, 753, 959
CviQI GTAC 7 cut(s) 241, 325, 367, 532, 567, 908, 1111
DdeI CTNAG 9 cut(s) 317, 347, 528, 558, 579, 681, 837, 969, 1025
DinI GGCGCC 1 cut(s) 95
DpnI GATC 6 cut(s) 19, 359, 549, 626, 822, 1140
DpnII GATC 6 cut(s) 17, 357, 547, 624, 820, 1138
Eam1104I CTCTTC 1 cut(s) 1118
EarI CTCTTC 1 cut(s) 1118
EciI GGCGGA 1 cut(s) 221
Eco31I GGTCTC 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 190
Eco81I CCTNAGG 1 cut(s) 347
Eco88I CYCGRG 2 cut(s) 61, 88
EcoNI CCTNNNNNAGG 1 cut(s) 125
EcoRI GAATTC 1 cut(s) 457
EcoRII CCWGG 4 cut(s) 147, 585, 708, 1134
EgeI GGCGCC 1 cut(s) 95
EheI GGCGCC 1 cut(s) 95
FaeI CATG 3 cut(s) 172, 756, 962
FatI CATG 3 cut(s) 168, 752, 958
FauI CCCGC 1 cut(s) 59
FauNDI CATATG 2 cut(s) 390, 552
FbaI TGATCA 1 cut(s) 547
FblI GTMKAC 1 cut(s) 36
FokI GGATG 2 cut(s) 839, 989
FspBI CTAG 1 cut(s) 911
GlaI GCGC 8 cut(s) 95, 108, 110, 146, 173, 669, 671, 673
HaeII RGCGCY 1 cut(s) 97
HaeIII GGCC 3 cut(s) 5, 131, 152
HapII CCGG 7 cut(s) 193, 251, 322, 335, 430, 442, 900
HgaI GACGC 1 cut(s) 394
HhaI GCGC 8 cut(s) 96, 109, 111, 147, 174, 670, 672, 674
Hin1I GRCGYC 1 cut(s) 94
Hin1II CATG 3 cut(s) 172, 756, 962
Hin6I GCGC 8 cut(s) 94, 107, 109, 145, 172, 668, 670, 672
HinP1I GCGC 8 cut(s) 94, 107, 109, 145, 172, 668, 670, 672
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 4 cut(s) 80, 518, 590, 944
HpaII CCGG 7 cut(s) 193, 251, 322, 335, 430, 442, 900
HphI GGTGA 2 cut(s) 466, 939
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 5 cut(s) 12, 25, 76, 417, 875
Hpy188III TCNNGA 5 cut(s) 263, 274, 824, 971, 1120
Hpy8I GTNNAC 1 cut(s) 37
Hpy99I CGWCG 6 cut(s) 38, 80, 184, 293, 296, 410
HpyAV CCTTC 2 cut(s) 295, 464
HpyCH4III ACNGT 2 cut(s) 307, 1058
HpyCH4IV ACGT 1 cut(s) 534
HpyCH4V TGCA 9 cut(s) 376, 388, 596, 746, 792, 800, 990, 1065, 1107
HpyF3I CTNAG 9 cut(s) 317, 347, 528, 558, 579, 681, 837, 969, 1025
HpySE526I ACGT 1 cut(s) 534
Hsp92I GRCGYC 1 cut(s) 94
Hsp92II CATG 3 cut(s) 172, 756, 962
HspAI GCGC 8 cut(s) 94, 107, 109, 145, 172, 668, 670, 672
KasI GGCGCC 1 cut(s) 93
KpnI GGTACC 1 cut(s) 570
KroI GCCGGC 2 cut(s) 429, 899
KroNI GCCGGC 2 cut(s) 431, 901
Ksp22I TGATCA 1 cut(s) 547
KspI CCGCGG 1 cut(s) 204
Kzo9I GATC 6 cut(s) 17, 357, 547, 624, 820, 1138
LmnI GCTCC 2 cut(s) 208, 830
Lsp1109I GCAGC 3 cut(s) 168, 974, 1143
LweI GCATC 5 cut(s) 33, 174, 842, 967, 999
MaeI CTAG 1 cut(s) 911
MaeII ACGT 1 cut(s) 534
MalI GATC 6 cut(s) 19, 359, 549, 626, 822, 1140
MboI GATC 6 cut(s) 17, 357, 547, 624, 820, 1138
MboII GAAGA 4 cut(s) 776, 854, 993, 1135
MfeI CAATTG 1 cut(s) 212
MluCI AATT 7 cut(s) 101, 212, 457, 490, 702, 863, 869
MluI ACGCGT 1 cut(s) 369
Mly113I GGCGCC 1 cut(s) 94
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 99
MroNI GCCGGC 2 cut(s) 429, 899
MroXI GAANNNNTTC 2 cut(s) 943, 960
MslI CAYNNNNRTG 1 cut(s) 751
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 7 cut(s) 193, 251, 322, 335, 430, 442, 900
MspR9I CCNGG 5 cut(s) 149, 194, 587, 710, 1136
MunI CAATTG 1 cut(s) 212
MvaI CCWGG 4 cut(s) 149, 587, 710, 1136
MvnI CGCG 7 cut(s) 109, 134, 174, 203, 371, 670, 672
NaeI GCCGGC 2 cut(s) 431, 901
NarI GGCGCC 1 cut(s) 94
NciI CCSGG 1 cut(s) 194
NdeI CATATG 2 cut(s) 390, 552
NdeII GATC 6 cut(s) 17, 357, 547, 624, 820, 1138
NgoMIV GCCGGC 2 cut(s) 429, 899
NlaIII CATG 3 cut(s) 172, 756, 962
NlaIV GGNNCC 2 cut(s) 95, 568
NspI RCATGY 2 cut(s) 756, 962
PaqCI CACCTGC 1 cut(s) 641
PauI GCGCGC 3 cut(s) 107, 668, 670
PciI ACATGT 1 cut(s) 958
PcsI WCGNNNNNNNCGW 2 cut(s) 68, 288
PdiI GCCGGC 2 cut(s) 431, 901
PdmI GAANNNNTTC 2 cut(s) 943, 960
PfeI GAWTC 3 cut(s) 518, 590, 944
PflFI GACNNNGTC 1 cut(s) 32
PfoI TCCNGGA 1 cut(s) 192
PleI GAGTC 1 cut(s) 88
PluTI GGCGCC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 88
Ppu21I YACGTR 1 cut(s) 535
PscI ACATGT 1 cut(s) 958
Psp6I CCWGG 4 cut(s) 147, 585, 708, 1134
PspGI CCWGG 4 cut(s) 147, 585, 708, 1134
PspN4I GGNNCC 2 cut(s) 95, 568
PspPI GGNCC 1 cut(s) 190
PstNI CAGNNNCTG 1 cut(s) 121
PsyI GACNNNGTC 1 cut(s) 32
PteI GCGCGC 3 cut(s) 107, 668, 670
RsaI GTAC 7 cut(s) 242, 326, 368, 533, 568, 909, 1112
RsaNI GTAC 7 cut(s) 241, 325, 367, 532, 567, 908, 1111
RseI CAYNNNNRTG 1 cut(s) 751
SacII CCGCGG 1 cut(s) 204
SalI GTCGAC 1 cut(s) 35
Sau3AI GATC 6 cut(s) 17, 357, 547, 624, 820, 1138
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 5 cut(s) 149, 194, 587, 710, 1136
SetI ASST 7 cut(s) 140, 537, 588, 655, 687, 916, 1097
SfaNI GCATC 5 cut(s) 33, 174, 842, 967, 999
SfoI GGCGCC 1 cut(s) 95
Sfr303I CCGCGG 1 cut(s) 204
SgrBI CCGCGG 1 cut(s) 204
SinI GGWCC 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 751
Sse9I AATT 7 cut(s) 101, 212, 457, 490, 702, 863, 869
SspDI GGCGCC 1 cut(s) 93
SspMI CTAG 1 cut(s) 911
StyD4I CCNGG 5 cut(s) 147, 192, 585, 708, 1134
TaaI ACNGT 2 cut(s) 307, 1058
TaiI ACGT 1 cut(s) 537
TaqI TCGA 6 cut(s) 36, 83, 182, 264, 408, 849
TasI AATT 7 cut(s) 101, 212, 457, 490, 702, 863, 869
TatI WGTACW 2 cut(s) 907, 1110
TauI GCSGC 7 cut(s) 127, 134, 162, 165, 206, 302, 424
TfiI GAWTC 3 cut(s) 518, 590, 944
TscAI CASTG 5 cut(s) 383, 431, 577, 753, 1061
TseI GCWGC 3 cut(s) 156, 987, 1131
TspGWI ACGGA 1 cut(s) 777
TspRI CASTG 5 cut(s) 383, 431, 577, 753, 1061
Tth111I GACNNNGTC 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 190
XagI CCTNNNNNAGG 1 cut(s) 125
XapI RAATTY 4 cut(s) 457, 490, 863, 869
XceI RCATGY 2 cut(s) 756, 962
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XmiI GTMKAC 1 cut(s) 36
XmnI GAANNNNTTC 2 cut(s) 943, 960
XspI CTAG 1 cut(s) 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.