Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004034

Physical Location & Seq

Genomic Coordinates Forward (+)

4429718 .. 4430965

Gene Structure 1248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G12980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGAAAAAGCCTTGAGAAACTTCACCGAATCTACCCACTCACCAGACCCTAATCCTCTCACAAAATTCTTCACTGAACCTACAGCCTCACCTGTTAGCCGCAACCGCAAACTGTCTTCAAAAGATACCACTGTAACCATCGCCGGAGCTGGCAGCAGCACGACGAGGTACCGCGGCGTACGCCGGAGGCCGTGGGGACGATACGCGGCGGAGATACGTGACCCAATGTCGAAGGAGAGACGTTGGCTCGGAACATTTGACACGGCGGAACAAGCCGCTTGTGCTTACGACTCTGCGGCTCGTGCCTTTCGTGGAGCAAAGGCTCGTACTAATTTTACTTATCCGACAGCTGTCATTATGCCTGAACCAAGGTTTTCTTTTTCCAACAAGAAATCTTCGCCGTCTGCTCGTTGTCCTCTTCCTTCTCTACCGTTAGATTCCTCTACCCAAAACTTTTACGGTGCACCGGCAGCGCAGAGGATCTATAATACACAGTCTATCTTCTTACGCGACGCCTCGTGTTCCTCTCGTAAAACGACTCCGTATAATAACTCTTTCAACGGCTCATCATCTTCTTACTCAGCATCGAAAACGGCATGCGTTTCTTATTCCGAAAACGAAAACAACGAGTCGTTTTTCCCGGAAGAATCTTCTGATACTGGTCTATTACAAGAGGTCGTTCAAGAGTTCTTGAAGAAAAATCGCGGCGTTCCTCCTTCTCCACCAACACCACCGCCGGTGACTAGCCATCATGACAACTCTGGTTATTTCTCTAATCTCACTATATACTCTGAAAATATGGTTCAAGAGACTAAGGAGACTTTGTCGTCGAAACTAGATCGCTACGGGAATTTTCAAGCTAATGACGACGGCGTAAGAGCCGTCGCAGACGGTGGTTTATCGTTGGGATCAAACGAGTGGGGGTATCAAGAAATGTTGATGTACGGAACTCAGTTAGGCTGTACTTGCCGAAGATCGTGGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009889 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051726 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090708 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

328

Amino Acids

36.32

Weight (kDa)

9.05

Isoelectric Point (pI)

57.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	55 - 105	2.9e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12980 AT1G28360 AT1G28370 AT1G28370 AT5G44210
fragaria_vesca	FvH4_3g08790 FvH4_7g26410
malus_domestica	MD05G1311600.v1.1 MD10G1290900.v1.1
prunus_persica	Prupe.4G051200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0008971
rosa_laevigata	RLG00000031621
rosa_multiflora	Rmu_sc0001875.1_g000010 Rmu_sc0004677.1_g000023 Rmu_ssc0000183.1_g000016
rosa_roxburghii	Rroxscaffold_1G00067050 Rroxscaffold_1G00067680
rosa_rugosa	Rorug02G0224700
rosa_samantha	Rh2AG229600 Rh2CG100300 Rh2CG233700 Rh2DG237300 Rh3BG166700 Rh3DG166100 Rh4BG243800 Rh5AG069400 Rh5BG066200 Rh5CG077400 Rh5DG065400 Rh7AG201600
rosa_wichuraiana	Rw1G005600 Rw5G006480 Rw7G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	826
Acc65I	GGTACC	1 cut(s)	168
AccB1I	GGYRCC	1 cut(s)	168
AccII	CGCG	4 cut(s)	174, 206, 510, 705
AclWI	GGATC	2 cut(s)	488, 916
AcsI	RAATTY	2 cut(s)	65, 850
AcyI	GRCGYC	1 cut(s)	513
AfaI	GTAC	5 cut(s)	170, 180, 328, 944, 964
AgsI	TTSAA	6 cut(s)	120, 559, 683, 694, 806, 857
AhdI	GACNNNNNGTC	1 cut(s)	226
AluBI	AGCT	3 cut(s)	149, 350, 860
AluI	AGCT	3 cut(s)	149, 350, 860
Alw21I	GWGCWC	1 cut(s)	466
Alw26I	GTCTC	3 cut(s)	232, 803, 812
Alw44I	GTGCAC	1 cut(s)	462
AlwI	GGATC	2 cut(s)	488, 916
AoxI	GGCC	1 cut(s)	188
ApaLI	GTGCAC	1 cut(s)	462
ApeKI	GCWGC	3 cut(s)	153, 156, 470
ApoI	RAATTY	2 cut(s)	65, 850
Asp718I	GGTACC	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	475
AsuC2I	CCSGG	1 cut(s)	641
AsuHPI	GGTGA	4 cut(s)	16, 33, 81, 751
BaeGI	GKGCMC	1 cut(s)	466
BaeI	ACNNNNGTAYC	2 cut(s)	117, 150
BanI	GGYRCC	1 cut(s)	168
BauI	CACGAG	2 cut(s)	300, 517
BbsI	GAAGAC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	466
BbvI	GCAGC	3 cut(s)	165, 168, 482
BccI	CCATC	2 cut(s)	146, 756
BceAI	ACGGC	7 cut(s)	175, 279, 385, 577, 609, 866, 886
BcnI	CCSGG	1 cut(s)	641
BcoDI	GTCTC	3 cut(s)	232, 803, 812
BfaI	CTAG	2 cut(s)	744, 836
BfmI	CTRYAG	1 cut(s)	81
BisI	GCNGC	9 cut(s)	100, 154, 157, 175, 207, 276, 297, 471, 706
BlsI	GCNGC	9 cut(s)	101, 155, 158, 176, 208, 277, 298, 472, 707
Bme1390I	CCNGG	1 cut(s)	641
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	170
BmrFI	CCNGG	1 cut(s)	641
BmsI	GCATC	1 cut(s)	593
BoxI	GACNNNNGTC	1 cut(s)	350
BpiI	GAAGAC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	641
BsaAI	YACGTR	1 cut(s)	218
BsaHI	GRCGYC	1 cut(s)	513
BsaJI	CCNNGG	3 cut(s)	172, 191, 368
BsaXI	ACNNNNNCTCC	2 cut(s)	809, 839
Bse118I	RCCGGY	2 cut(s)	466, 736
Bse1I	ACTGG	1 cut(s)	664
BseDI	CCNNGG	3 cut(s)	172, 191, 368
BseMII	CTCAG	2 cut(s)	594, 965
BseNI	ACTGG	1 cut(s)	664
BseSI	GKGCMC	1 cut(s)	466
BseXI	GCAGC	3 cut(s)	165, 168, 482
Bsh1236I	CGCG	4 cut(s)	174, 206, 510, 705
BshFI	GGCC	1 cut(s)	190
BshNI	GGYRCC	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	466
BsiSI	CCGG	5 cut(s)	144, 184, 467, 641, 737
BsiWI	CGTACG	1 cut(s)	178
BslFI	GGGAC	1 cut(s)	210
BsmAI	GTCTC	3 cut(s)	232, 803, 812
BsmBI	CGTCTC	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	466
Bsp143I	GATC	4 cut(s)	480, 838, 908, 974
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	2 cut(s)	593, 964
BspFNI	CGCG	4 cut(s)	174, 206, 510, 705
BspHI	TCATGA	1 cut(s)	751
BspLI	GGNNCC	1 cut(s)	170
BspPI	GGATC	2 cut(s)	488, 916
BspT107I	GGYRCC	1 cut(s)	168
BsrFI	RCCGGY	2 cut(s)	466, 736
BsrI	ACTGG	1 cut(s)	664
BssAI	RCCGGY	2 cut(s)	466, 736
BssECI	CCNNGG	3 cut(s)	172, 191, 368
BssMI	GATC	4 cut(s)	480, 838, 908, 974
BssNI	GRCGYC	1 cut(s)	513
BssSI	CACGAG	2 cut(s)	300, 517
BssT1I	CCWWGG	1 cut(s)	368
Bst2BI	CACGAG	2 cut(s)	300, 517
Bst4CI	ACNGT	6 cut(s)	114, 133, 432, 461, 495, 893
Bst6I	CTCTTC	1 cut(s)	423
BstACI	GRCGYC	1 cut(s)	513
BstBAI	YACGTR	1 cut(s)	218
BstC8I	GCNNGC	2 cut(s)	151, 598
BstDEI	CTNAG	3 cut(s)	580, 813, 951
BstDSI	CCRYGG	2 cut(s)	172, 191
BstFNI	CGCG	4 cut(s)	174, 206, 510, 705
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	4 cut(s)	483, 841, 911, 977
BstMAI	GTCTC	3 cut(s)	232, 803, 812
BstMBI	GATC	4 cut(s)	480, 838, 908, 974
BstMWI	GCNNNNNNNGC	7 cut(s)	105, 180, 272, 281, 302, 470, 966
BstNSI	RCATGY	1 cut(s)	600
BstPAI	GACNNNNGTC	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	639
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	1 cut(s)	466
BstUI	CGCG	4 cut(s)	174, 206, 510, 705
BstV1I	GCAGC	3 cut(s)	165, 168, 482
BstV2I	GAAGAC	1 cut(s)	108
BstX2I	RGATCY	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	480
BsuRI	GGCC	1 cut(s)	190
BtgI	CCRYGG	2 cut(s)	172, 191
BtgZI	GCGATG	1 cut(s)	124
BtsIMutI	CAGTG	2 cut(s)	72, 129
Cac8I	GCNNGC	2 cut(s)	151, 598
CciI	TCATGA	1 cut(s)	751
CfoI	GCGC	1 cut(s)	475
Cfr10I	RCCGGY	2 cut(s)	466, 736
Cfr42I	CCGCGG	1 cut(s)	175
CseI	GACGC	1 cut(s)	521
Csp6I	GTAC	5 cut(s)	169, 179, 327, 943, 963
CviAII	CATG	2 cut(s)	597, 752
CviQI	GTAC	5 cut(s)	169, 179, 327, 943, 963
DdeI	CTNAG	3 cut(s)	580, 813, 951
DpnI	GATC	4 cut(s)	482, 840, 910, 976
DpnII	GATC	4 cut(s)	480, 838, 908, 974
DrdI	GACNNNNNNGTC	1 cut(s)	826
DriI	GACNNNNNGTC	1 cut(s)	226
DseDI	GACNNNNNNGTC	1 cut(s)	826
Eam1104I	CTCTTC	1 cut(s)	423
Eam1105I	GACNNNNNGTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	423
EciI	GGCGGA	2 cut(s)	224, 281
Eco130I	CCWWGG	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	368
ErhI	CCWWGG	1 cut(s)	368
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	2 cut(s)	600, 755
FaiI	YATR	8 cut(s)	359, 486, 546, 598, 753, 785, 787, 800
FalI	AAGNNNNNCTT	2 cut(s)	361, 393
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	2 cut(s)	596, 751
Fnu4HI	GCNGC	9 cut(s)	100, 154, 157, 175, 207, 276, 297, 471, 706
Fsp4HI	GCNGC	9 cut(s)	100, 154, 157, 175, 207, 276, 297, 471, 706
FspBI	CTAG	2 cut(s)	744, 836
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	9 cut(s)	100, 154, 157, 175, 207, 276, 297, 471, 706
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	5 cut(s)	144, 184, 467, 641, 737
HgaI	GACGC	1 cut(s)	521
HhaI	GCGC	1 cut(s)	475
Hin1I	GRCGYC	1 cut(s)	513
Hin1II	CATG	2 cut(s)	600, 755
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HinfI	GANTC	6 cut(s)	29, 290, 437, 538, 629, 647
HpaII	CCGG	5 cut(s)	144, 184, 467, 641, 737
HphI	GGTGA	4 cut(s)	16, 33, 81, 751
Hpy166II	GTNNAC	1 cut(s)	464
Hpy188I	TCNGA	5 cut(s)	251, 345, 613, 655, 793
Hpy188III	TCNNGA	5 cut(s)	683, 691, 752, 806, 929
Hpy8I	GTNNAC	1 cut(s)	464
Hpy99I	CGWCG	5 cut(s)	166, 515, 832, 872, 887
HpyAV	CCTTC	3 cut(s)	226, 432, 726
HpyCH4III	ACNGT	6 cut(s)	114, 133, 432, 461, 495, 893
HpyCH4IV	ACGT	2 cut(s)	217, 241
HpyCH4V	TGCA	1 cut(s)	464
HpyF10VI	GCNNNNNNNGC	7 cut(s)	105, 180, 272, 281, 302, 470, 966
HpyF3I	CTNAG	3 cut(s)	580, 813, 951
HpySE526I	ACGT	2 cut(s)	217, 241
Hsp92I	GRCGYC	1 cut(s)	513
Hsp92II	CATG	2 cut(s)	600, 755
HspAI	GCGC	1 cut(s)	473
KpnI	GGTACC	1 cut(s)	172
KspI	CCGCGG	1 cut(s)	175
Kzo9I	GATC	4 cut(s)	480, 838, 908, 974
LmnI	GCTCC	2 cut(s)	146, 314
Lsp1109I	GCAGC	3 cut(s)	165, 168, 482
LweI	GCATC	1 cut(s)	593
MaeI	CTAG	2 cut(s)	744, 836
MaeII	ACGT	2 cut(s)	217, 241
MaeIII	GTNAC	3 cut(s)	133, 218, 739
MalI	GATC	4 cut(s)	482, 840, 910, 976
MboI	GATC	4 cut(s)	480, 838, 908, 974
MflI	RGATCY	1 cut(s)	480
MhlI	GDGCHC	1 cut(s)	466
MluCI	AATT	3 cut(s)	65, 331, 850
MlyI	GAGTC	3 cut(s)	284, 532, 638
MmeI	TCCRAC	2 cut(s)	368, 408
MspA1I	CMGCKG	2 cut(s)	174, 350
MspI	CCGG	5 cut(s)	144, 184, 467, 641, 737
MspR9I	CCNGG	1 cut(s)	641
MvnI	CGCG	4 cut(s)	174, 206, 510, 705
MwoI	GCNNNNNNNGC	7 cut(s)	105, 180, 272, 281, 302, 470, 966
NciI	CCSGG	1 cut(s)	641
NdeII	GATC	4 cut(s)	480, 838, 908, 974
NlaIII	CATG	2 cut(s)	600, 755
NlaIV	GGNNCC	1 cut(s)	170
NmuCI	GTSAC	2 cut(s)	218, 739
NspI	RCATGY	1 cut(s)	600
PaeI	GCATGC	1 cut(s)	600
PagI	TCATGA	1 cut(s)	751
PcsI	WCGNNNNNNNCGW	2 cut(s)	307, 624
PfeI	GAWTC	3 cut(s)	29, 437, 647
Pfl23II	CGTACG	1 cut(s)	178
PflFI	GACNNNGTC	1 cut(s)	823
PfoI	TCCNGGA	1 cut(s)	639
PkrI	GCNGC	9 cut(s)	101, 155, 158, 176, 208, 277, 298, 472, 707
PleI	GAGTC	3 cut(s)	284, 532, 637
PpsI	GAGTC	3 cut(s)	284, 532, 637
Ppu21I	YACGTR	1 cut(s)	218
PshAI	GACNNNNGTC	1 cut(s)	350
PspLI	CGTACG	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	480
PsyI	GACNNNGTC	1 cut(s)	823
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	5 cut(s)	170, 180, 328, 944, 964
RsaNI	GTAC	5 cut(s)	169, 179, 327, 943, 963
SacII	CCGCGG	1 cut(s)	175
SatI	GCNGC	9 cut(s)	100, 154, 157, 175, 207, 276, 297, 471, 706
Sau3AI	GATC	4 cut(s)	480, 838, 908, 974
SchI	GAGTC	3 cut(s)	284, 532, 638
ScrFI	CCNGG	1 cut(s)	641
SduI	GDGCHC	1 cut(s)	466
SfaNI	GCATC	1 cut(s)	593
SfcI	CTRYAG	1 cut(s)	81
Sfr303I	CCGCGG	1 cut(s)	175
SgrAI	CRCCGGYG	1 cut(s)	736
SgrBI	CCGCGG	1 cut(s)	175
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
SphI	GCATGC	1 cut(s)	600
Sse9I	AATT	3 cut(s)	65, 331, 850
SspMI	CTAG	2 cut(s)	744, 836
StyD4I	CCNGG	1 cut(s)	639
StyI	CCWWGG	1 cut(s)	368
TaaI	ACNGT	6 cut(s)	114, 133, 432, 461, 495, 893
TaiI	ACGT	2 cut(s)	220, 244
TaqI	TCGA	3 cut(s)	230, 587, 830
TasI	AATT	3 cut(s)	65, 331, 850
TatI	WGTACW	1 cut(s)	962
TauI	GCSGC	6 cut(s)	102, 177, 209, 278, 299, 708
TfiI	GAWTC	3 cut(s)	29, 437, 647
TscAI	CASTG	2 cut(s)	79, 136
TseFI	GTSAC	2 cut(s)	218, 739
TseI	GCWGC	3 cut(s)	153, 156, 470
Tsp45I	GTSAC	2 cut(s)	218, 739
TspGWI	ACGGA	2 cut(s)	531, 960
TspRI	CASTG	2 cut(s)	79, 136
Tth111I	GACNNNGTC	1 cut(s)	823
VneI	GTGCAC	1 cut(s)	462
XapI	RAATTY	2 cut(s)	65, 850
XceI	RCATGY	1 cut(s)	600
XspI	CTAG	2 cut(s)	744, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.