Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004034

Physical Location & Seq

Genomic Coordinates Reverse (-)

37964781 .. 37965320

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1290900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCGACTGCAGCTGCTCCGTCTTCCTCCCGCGAGGGCCACTACCGGGGCGTTAGGAAGCGGCCGTGGGGCCGGTACGCAGCAGAAATCCGGGACCCGTGGAAGAAGACGAGGGTCTGGCTAGGCACATTCGACACGCCGGAGGAAGCCGCCCTAGCATACGACGGCGCCGCCAGGACGCTCCGTGGGGCCAAGGCCAAGACCAATTTTCCTGCGCCGATCCCCAGCGGCATCTCCCTCGACCTCAACGCTCCTTCGGCCACCCACTGGGCCTCCCACTCCGGCCGCCTCGTCGAGTTCCTCCACACCGGCGTCCTCAACGACATGGGCGGCGATGGGGCAACGACTGATACGCCGCCGTTGATGGCGAGGAGGGAACCACAGCAAACTCCGGTTGGTGTAGCGGGAAATGCCCCCGCCGGCGGCAGTAATGATACGGTCCCGGAAGGTTCGGGTTTCGGCAGTACGGCGTTGTTTCTAGGACTGGTCCGACGTGGTTTGCCTATTGATCTCAATGAACCACCTCCCATGTGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

180

Amino Acids

18.98

Weight (kDa)

9.15

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	14 - 63	1.3e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12980 AT1G28360 AT1G28370 AT1G28370 AT5G44210
fragaria_vesca	FvH4_3g08790 FvH4_7g26410
malus_domestica	MD05G1311600.v1.1 MD10G1290900.v1.1
prunus_persica	Prupe.4G051200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0008971
rosa_laevigata	RLG00000031621
rosa_multiflora	Rmu_sc0001875.1_g000010 Rmu_sc0004677.1_g000023 Rmu_ssc0000183.1_g000016
rosa_roxburghii	Rroxscaffold_1G00067050 Rroxscaffold_1G00067680
rosa_rugosa	Rorug02G0224700
rosa_samantha	Rh2AG229600 Rh2CG100300 Rh2CG233700 Rh2DG237300 Rh3BG166700 Rh3DG166100 Rh4BG243800 Rh5AG069400 Rh5BG066200 Rh5CG077400 Rh5DG065400 Rh7AG201600
rosa_wichuraiana	Rw1G005600 Rw5G006480 Rw7G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	267
AccII	CGCG	1 cut(s)	33
AclWI	GGATC	1 cut(s)	214
AcoI	YGGCCR	3 cut(s)	62, 258, 283
AcyI	GRCGYC	2 cut(s)	168, 312
AfaI	GTAC	2 cut(s)	77, 466
AfiI	CCNNNNNNNGG	3 cut(s)	46, 267, 422
AjiI	CACGTC	1 cut(s)	494
AjnI	CCWGG	1 cut(s)	173
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
AlwI	GGATC	1 cut(s)	214
AoxI	GGCC	8 cut(s)	37, 62, 70, 189, 195, 258, 270, 283
ApeKI	GCWGC	3 cut(s)	11, 14, 80
AspLEI	GCGC	2 cut(s)	170, 217
AspS9I	GGNCC	7 cut(s)	37, 70, 94, 189, 270, 439, 487
AsuC2I	CCSGG	3 cut(s)	47, 92, 443
AvaII	GGWCC	3 cut(s)	94, 439, 487
BanI	GGYRCC	1 cut(s)	167
BbsI	GAAGAC	2 cut(s)	15, 113
BbvI	GCAGC	2 cut(s)	23, 92
BccI	CCATC	2 cut(s)	329, 358
BceAI	ACGGC	4 cut(s)	49, 181, 343, 483
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BciT130I	CCWGG	1 cut(s)	175
BcnI	CCSGG	3 cut(s)	47, 92, 443
BfaI	CTAG	3 cut(s)	122, 155, 479
BfmI	CTRYAG	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	171
Bme1390I	CCNGG	4 cut(s)	47, 92, 175, 443
Bme18I	GGWCC	3 cut(s)	94, 439, 487
BmgBI	CACGTC	1 cut(s)	494
BmgT120I	GGNCC	7 cut(s)	37, 70, 94, 189, 270, 439, 487
BmiI	GGNNCC	7 cut(s)	71, 95, 96, 169, 190, 378, 441
BmrFI	CCNGG	4 cut(s)	47, 92, 175, 443
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	1 cut(s)	240
BmuI	ACTGGG	1 cut(s)	277
BoxI	GACNNNNGTC	1 cut(s)	113
BpiI	GAAGAC	2 cut(s)	15, 113
BpuMI	CCSGG	3 cut(s)	47, 92, 443
BsaHI	GRCGYC	2 cut(s)	168, 312
BsaJI	CCNNGG	5 cut(s)	46, 65, 98, 184, 192
BsaWI	WCCGGW	1 cut(s)	391
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 267, 422
Bse118I	RCCGGY	3 cut(s)	72, 308, 419
Bse1I	ACTGG	2 cut(s)	272, 489
BseBI	CCWGG	1 cut(s)	175
BseDI	CCNNGG	5 cut(s)	46, 65, 98, 184, 192
BseLI	CCNNNNNNNGG	3 cut(s)	46, 267, 422
BseNI	ACTGG	2 cut(s)	272, 489
BseRI	GAGGAG	1 cut(s)	385
BseX3I	CGGCCG	2 cut(s)	62, 283
BseXI	GCAGC	2 cut(s)	23, 92
BseYI	CCCAGC	1 cut(s)	224
Bsh1236I	CGCG	1 cut(s)	33
Bsh1285I	CGRYCG	2 cut(s)	65, 286
BshFI	GGCC	8 cut(s)	39, 64, 72, 191, 197, 260, 272, 285
BshNI	GGYRCC	1 cut(s)	167
BsiEI	CGRYCG	2 cut(s)	65, 286
BsiSI	CCGG	9 cut(s)	46, 73, 91, 140, 282, 309, 392, 420, 443
BslFI	GGGAC	2 cut(s)	107, 425
BslI	CCNNNNNNNGG	3 cut(s)	46, 267, 422
BsmFI	GGGAC	2 cut(s)	107, 425
BsnI	GGCC	8 cut(s)	39, 64, 72, 191, 197, 260, 272, 285
Bsp143I	GATC	2 cut(s)	219, 508
BspANI	GGCC	8 cut(s)	39, 64, 72, 191, 197, 260, 272, 285
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	7 cut(s)	71, 95, 96, 169, 190, 378, 441
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	1 cut(s)	214
BspT107I	GGYRCC	1 cut(s)	167
BsrFI	RCCGGY	3 cut(s)	72, 308, 419
BsrI	ACTGG	2 cut(s)	272, 489
BssAI	RCCGGY	3 cut(s)	72, 308, 419
BssECI	CCNNGG	5 cut(s)	46, 65, 98, 184, 192
BssMI	GATC	2 cut(s)	219, 508
BssNI	GRCGYC	2 cut(s)	168, 312
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	175
Bst4CI	ACNGT	1 cut(s)	439
BstACI	GRCGYC	2 cut(s)	168, 312
BstC8I	GCNNGC	1 cut(s)	421
BstDSI	CCRYGG	3 cut(s)	65, 98, 184
BstFNI	CGCG	1 cut(s)	33
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	2 cut(s)	170, 217
BstKTI	GATC	2 cut(s)	222, 511
BstMBI	GATC	2 cut(s)	219, 508
BstMCI	CGRYCG	2 cut(s)	65, 286
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 155, 257, 410
BstNI	CCWGG	1 cut(s)	175
BstPAI	GACNNNNGTC	1 cut(s)	113
BstSCI	CCNGG	4 cut(s)	45, 90, 173, 441
BstSFI	CTRYAG	1 cut(s)	9
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	2 cut(s)	23, 92
BstV2I	GAAGAC	2 cut(s)	15, 113
BstZI	CGGCCG	2 cut(s)	62, 283
BsuRI	GGCC	8 cut(s)	39, 64, 72, 191, 197, 260, 272, 285
BtgI	CCRYGG	3 cut(s)	65, 98, 184
BtgZI	GCGATG	1 cut(s)	348
BtrI	CACGTC	1 cut(s)	494
BtsIMutI	CAGTG	1 cut(s)	265
Cac8I	GCNNGC	1 cut(s)	421
CfoI	GCGC	2 cut(s)	170, 217
Cfr10I	RCCGGY	3 cut(s)	72, 308, 419
Cfr13I	GGNCC	7 cut(s)	37, 70, 94, 189, 270, 439, 487
CseI	GACGC	2 cut(s)	187, 301
Csp6I	GTAC	2 cut(s)	76, 465
CviAII	CATG	2 cut(s)	325, 529
CviQI	GTAC	2 cut(s)	76, 465
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	2 cut(s)	221, 510
DpnII	GATC	2 cut(s)	219, 508
EaeI	YGGCCR	3 cut(s)	62, 258, 283
EagI	CGGCCG	2 cut(s)	62, 283
EclXI	CGGCCG	2 cut(s)	62, 283
Eco130I	CCWWGG	1 cut(s)	192
Eco47I	GGWCC	3 cut(s)	94, 439, 487
Eco52I	CGGCCG	2 cut(s)	62, 283
EcoO109I	RGGNCCY	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	173
EcoT14I	CCWWGG	1 cut(s)	192
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	2 cut(s)	328, 532
FaiI	YATR	3 cut(s)	160, 326, 530
FaqI	GGGAC	2 cut(s)	107, 425
FatI	CATG	2 cut(s)	324, 528
FauI	CCCGC	3 cut(s)	38, 397, 424
FspBI	CTAG	3 cut(s)	122, 155, 479
GlaI	GCGC	2 cut(s)	169, 216
GsaI	CCCAGC	1 cut(s)	228
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	8 cut(s)	39, 64, 72, 191, 197, 260, 272, 285
HapII	CCGG	9 cut(s)	46, 73, 91, 140, 282, 309, 392, 420, 443
HgaI	GACGC	2 cut(s)	187, 301
HhaI	GCGC	2 cut(s)	170, 217
Hin1I	GRCGYC	2 cut(s)	168, 312
Hin1II	CATG	2 cut(s)	328, 532
Hin6I	GCGC	2 cut(s)	168, 215
HinP1I	GCGC	2 cut(s)	168, 215
HpaII	CCGG	9 cut(s)	46, 73, 91, 140, 282, 309, 392, 420, 443
Hpy188I	TCNGA	1 cut(s)	491
Hpy99I	CGWCG	3 cut(s)	167, 296, 495
HpyAV	CCTTC	2 cut(s)	264, 440
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4IV	ACGT	1 cut(s)	493
HpyCH4V	TGCA	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 155, 257, 410
HpySE526I	ACGT	1 cut(s)	493
Hsp92I	GRCGYC	2 cut(s)	168, 312
Hsp92II	CATG	2 cut(s)	328, 532
HspAI	GCGC	2 cut(s)	168, 215
KasI	GGCGCC	1 cut(s)	167
KflI	GGGWCCC	1 cut(s)	94
KroI	GCCGGC	1 cut(s)	419
KroNI	GCCGGC	1 cut(s)	421
Kzo9I	GATC	2 cut(s)	219, 508
LmnI	GCTCC	3 cut(s)	22, 186, 256
Lsp1109I	GCAGC	2 cut(s)	23, 92
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	3 cut(s)	122, 155, 479
MaeII	ACGT	1 cut(s)	493
MalI	GATC	2 cut(s)	221, 510
MboI	GATC	2 cut(s)	219, 508
MboII	GAAGA	3 cut(s)	15, 115, 118
MluCI	AATT	1 cut(s)	205
Mly113I	GGCGCC	1 cut(s)	168
MmeI	TCCRAC	1 cut(s)	514
MreI	CGCCGGCG	1 cut(s)	419
MroNI	GCCGGC	1 cut(s)	419
MspA1I	CMGCKG	2 cut(s)	14, 228
MspI	CCGG	9 cut(s)	46, 73, 91, 140, 282, 309, 392, 420, 443
MspR9I	CCNGG	4 cut(s)	47, 92, 175, 443
MvaI	CCWGG	1 cut(s)	175
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	4 cut(s)	11, 155, 257, 410
NaeI	GCCGGC	1 cut(s)	421
NarI	GGCGCC	1 cut(s)	168
NciI	CCSGG	3 cut(s)	47, 92, 443
NdeII	GATC	2 cut(s)	219, 508
NgoMIV	GCCGGC	1 cut(s)	419
NlaIII	CATG	2 cut(s)	328, 532
NlaIV	GGNNCC	7 cut(s)	71, 95, 96, 169, 190, 378, 441
PdiI	GCCGGC	1 cut(s)	421
PflMI	CCANNNNNTGG	1 cut(s)	267
PfoI	TCCNGGA	2 cut(s)	90, 441
PluTI	GGCGCC	1 cut(s)	171
PpuMI	RGGWCCY	1 cut(s)	94
PshAI	GACNNNNGTC	1 cut(s)	113
Psp5II	RGGWCCY	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	173
PspFI	CCCAGC	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	173
PspN4I	GGNNCC	7 cut(s)	71, 95, 96, 169, 190, 378, 441
PspPI	GGNCC	7 cut(s)	37, 70, 94, 189, 270, 439, 487
PspPPI	RGGWCCY	1 cut(s)	94
PstI	CTGCAG	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	2 cut(s)	77, 466
RsaNI	GTAC	2 cut(s)	76, 465
Sau3AI	GATC	2 cut(s)	219, 508
Sau96I	GGNCC	7 cut(s)	37, 70, 94, 189, 270, 439, 487
ScrFI	CCNGG	4 cut(s)	47, 92, 175, 443
SetI	ASST	5 cut(s)	16, 246, 451, 496, 526
SfaNI	GCATC	1 cut(s)	240
SfcI	CTRYAG	1 cut(s)	9
SfoI	GGCGCC	1 cut(s)	169
SgrAI	CRCCGGYG	2 cut(s)	308, 419
SinI	GGWCC	3 cut(s)	94, 439, 487
Sse9I	AATT	1 cut(s)	205
SspDI	GGCGCC	1 cut(s)	167
SspMI	CTAG	3 cut(s)	122, 155, 479
StyD4I	CCNGG	4 cut(s)	45, 90, 173, 441
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	439
TaiI	ACGT	1 cut(s)	496
TaqI	TCGA	3 cut(s)	132, 240, 294
TasI	AATT	1 cut(s)	205
TauI	GCSGC	8 cut(s)	64, 152, 173, 231, 288, 333, 358, 426
TscAI	CASTG	1 cut(s)	272
TseI	GCWGC	3 cut(s)	11, 14, 80
TspDTI	ATGAA	1 cut(s)	531
TspGWI	ACGGA	2 cut(s)	9, 173
TspRI	CASTG	1 cut(s)	272
Van91I	CCANNNNNTGG	1 cut(s)	267
VpaK11BI	GGWCC	3 cut(s)	94, 439, 487
XcmI	CCANNNNNNNNNTGG	1 cut(s)	528
XspI	CTAG	3 cut(s)	122, 155, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.