Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004034

Physical Location & Seq

Genomic Coordinates Reverse (-)

18350182 .. 18350442

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG201600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGCCGGAGGAGGCAGCTCTCACCTATGATGGCGCCGCCAGGTCTCTCAACTGCAACAAGGCCAAGACCAAGACCAACTTCCTGACACCGTTGATGAAAGGATATCTCTCCCTCGACCTTAACATCTCCTCCGCCCAGTGGGCCTCCCACTCCGGCCGTCTAGTTGAGTTTCTCCACACCGGCGTCCTAAAAGACGTTGTGAAGAGCAAGGAGGCGGCGGGACGTCGTTTGTTGTGTCCAGTGTTGTCTGAACCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

86

Amino Acids

9.33

Weight (kDa)

9.06

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12980 AT1G28360 AT1G28370 AT1G28370 AT5G44210
fragaria_vesca	FvH4_3g08790 FvH4_7g26410
malus_domestica	MD05G1311600.v1.1 MD10G1290900.v1.1
prunus_persica	Prupe.4G051200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0008971
rosa_laevigata	RLG00000031621
rosa_multiflora	Rmu_sc0001875.1_g000010 Rmu_sc0004677.1_g000023 Rmu_ssc0000183.1_g000016
rosa_roxburghii	Rroxscaffold_1G00067050 Rroxscaffold_1G00067680
rosa_rugosa	Rorug02G0224700
rosa_samantha	Rh2AG229600 Rh2CG100300 Rh2CG233700 Rh2DG237300 Rh3BG166700 Rh3DG166100 Rh4BG243800 Rh5AG069400 Rh5BG066200 Rh5CG077400 Rh5DG065400 Rh7AG201600
rosa_wichuraiana	Rw1G005600 Rw5G006480 Rw7G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	226
AccB1I	GGYRCC	1 cut(s)	32
AciI	CCGC	4 cut(s)	36, 132, 215, 218
AcoI	YGGCCR	1 cut(s)	154
AcyI	GRCGYC	3 cut(s)	33, 183, 223
AfiI	CCNNNNNNNGG	1 cut(s)	138
AjnI	CCWGG	1 cut(s)	38
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	48
AoxI	GGCC	3 cut(s)	60, 141, 154
ApeKI	GCWGC	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	141
AsuHPI	GGTGA	1 cut(s)	13
BanI	GGYRCC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	1 cut(s)	23
BceAI	ACGGC	1 cut(s)	141
BciT130I	CCWGG	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	1 cut(s)	161
BfoI	RGCGCY	1 cut(s)	36
BglI	GCCNNNNNGGC	1 cut(s)	140
BisI	GCNGC	3 cut(s)	15, 36, 216
BlsI	GCNGC	3 cut(s)	16, 37, 217
Bme1390I	CCNGG	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	40
BmrI	ACTGGG	1 cut(s)	130
BmuI	ACTGGG	1 cut(s)	130
BsaHI	GRCGYC	3 cut(s)	33, 183, 223
BsaI	GGTCTC	1 cut(s)	48
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	2 cut(s)	136, 239
BseBI	CCWGG	1 cut(s)	40
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseNI	ACTGG	2 cut(s)	136, 239
BseRI	GAGGAG	2 cut(s)	23, 118
BseX3I	CGGCCG	1 cut(s)	154
BseXI	GCAGC	1 cut(s)	26
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	3 cut(s)	62, 143, 156
BshNI	GGYRCC	1 cut(s)	32
BsiEI	CGRYCG	1 cut(s)	157
BsiSI	CCGG	3 cut(s)	5, 153, 180
BslFI	GGGAC	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmAI	GTCTC	1 cut(s)	48
BsmFI	GGGAC	1 cut(s)	234
BsnI	GGCC	3 cut(s)	62, 143, 156
Bso31I	GGTCTC	1 cut(s)	48
BspACI	CCGC	4 cut(s)	36, 132, 215, 218
BspANI	GGCC	3 cut(s)	62, 143, 156
BspLI	GGNNCC	1 cut(s)	34
BspQI	GCTCTTC	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	32
BspTNI	GGTCTC	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	179
BsrI	ACTGG	2 cut(s)	136, 239
BssAI	RCCGGY	1 cut(s)	179
BssNI	GRCGYC	3 cut(s)	33, 183, 223
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	90
Bst6I	CTCTTC	1 cut(s)	197
BstACI	GRCGYC	3 cut(s)	33, 183, 223
BstDEI	CTNAG	1 cut(s)	258
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstMAI	GTCTC	1 cut(s)	48
BstMCI	CGRYCG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	38
BstV1I	GCAGC	1 cut(s)	26
BstZI	CGGCCG	1 cut(s)	154
BsuRI	GGCC	3 cut(s)	62, 143, 156
BtsIMutI	CAGTG	2 cut(s)	143, 246
CfoI	GCGC	1 cut(s)	35
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	141
CseI	GACGC	1 cut(s)	172
CviJI	RGCY	4 cut(s)	17, 62, 143, 156
CviKI_1	RGCY	4 cut(s)	17, 62, 143, 156
DdeI	CTNAG	1 cut(s)	258
DinI	GGCGCC	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	154
EagI	CGGCCG	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
EciI	GGCGGA	1 cut(s)	121
EclXI	CGGCCG	1 cut(s)	154
Eco31I	GGTCTC	1 cut(s)	48
Eco32I	GATATC	1 cut(s)	104
Eco52I	CGGCCG	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	38
EcoRV	GATATC	1 cut(s)	104
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
FaiI	YATR	1 cut(s)	27
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	1 cut(s)	234
FauI	CCCGC	1 cut(s)	211
Fnu4HI	GCNGC	3 cut(s)	15, 36, 216
Fsp4HI	GCNGC	3 cut(s)	15, 36, 216
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	3 cut(s)	15, 36, 216
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	3 cut(s)	62, 143, 156
HapII	CCGG	3 cut(s)	5, 153, 180
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	3 cut(s)	33, 183, 223
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HpaII	CCGG	3 cut(s)	5, 153, 180
HphI	GGTGA	1 cut(s)	13
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	1 cut(s)	82
Hpy99I	CGWCG	1 cut(s)	228
HpyCH4III	ACNGT	1 cut(s)	90
HpyCH4IV	ACGT	2 cut(s)	195, 223
HpyCH4V	TGCA	1 cut(s)	54
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	2 cut(s)	195, 223
Hsp92I	GRCGYC	3 cut(s)	33, 183, 223
HspAI	GCGC	1 cut(s)	33
KasI	GGCGCC	1 cut(s)	32
LguI	GCTCTTC	1 cut(s)	197
LpnPI	CCDG	8 cut(s)	18, 25, 52, 95, 149, 166, 193, 252
Lsp1109I	GCAGC	1 cut(s)	26
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	2 cut(s)	195, 223
MboII	GAAGA	1 cut(s)	214
Mly113I	GGCGCC	1 cut(s)	33
MnlI	CCTC	5 cut(s)	4, 122, 139, 154, 205
MseI	TTAA	1 cut(s)	120
MspI	CCGG	3 cut(s)	5, 153, 180
MspR9I	CCNGG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	40
MwoI	GCNNNNNNNGC	1 cut(s)	140
NarI	GGCGCC	1 cut(s)	33
NlaIV	GGNNCC	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	197
PkrI	GCNGC	3 cut(s)	16, 37, 217
PluTI	GGCGCC	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	34
PspPI	GGNCC	1 cut(s)	141
SapI	GCTCTTC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	3 cut(s)	15, 36, 216
Sau96I	GGNCC	1 cut(s)	141
ScrFI	CCNGG	1 cut(s)	40
SetI	ASST	7 cut(s)	19, 26, 44, 120, 198, 226, 256
SfoI	GGCGCC	1 cut(s)	34
SgrAI	CRCCGGYG	1 cut(s)	179
SsiI	CCGC	4 cut(s)	36, 132, 215, 218
SspDI	GGCGCC	1 cut(s)	32
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	38
TaaI	ACNGT	1 cut(s)	90
TaiI	ACGT	2 cut(s)	198, 226
TaqI	TCGA	1 cut(s)	114
TauI	GCSGC	2 cut(s)	38, 218
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	2 cut(s)	143, 246
TseI	GCWGC	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	110
TspRI	CASTG	2 cut(s)	143, 246
XspI	CTAG	1 cut(s)	161
ZraI	GACGTC	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.