Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001875.1

Orthogroup ID

OG0004034

Physical Location & Seq

Genomic Coordinates Forward (+)

20516 .. 22433

Gene Structure 1918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001875.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

atgtcatatgccttctttggtctaaatttaaagcgtaaccttgacggagcagctctcgcctacgacgacccctccaggtctctccgtggcaacaaggccaagaccaacttcctgacgccgttgaccagagaagatctctccctcgacctcaacatctcctccgcccagtggtcctcccactctggttgtctggttgagtttctacacaccgacgtcctgaatgacgtcgtgaagagcaaggaggcggtggggagatcgtttgttgtgtccggtgttgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

93

Amino Acids

10.16

Weight (kDa)

6.71

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12980 AT1G28360 AT1G28370 AT1G28370 AT5G44210
fragaria_vesca	FvH4_3g08790 FvH4_7g26410
malus_domestica	MD05G1311600.v1.1 MD10G1290900.v1.1
prunus_persica	Prupe.4G051200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0008971
rosa_laevigata	RLG00000031621
rosa_multiflora	Rmu_sc0001875.1_g000010 Rmu_sc0004677.1_g000023 Rmu_ssc0000183.1_g000016
rosa_roxburghii	Rroxscaffold_1G00067050 Rroxscaffold_1G00067680
rosa_rugosa	Rorug02G0224700
rosa_samantha	Rh2AG229600 Rh2CG100300 Rh2CG233700 Rh2DG237300 Rh3BG166700 Rh3DG166100 Rh4BG243800 Rh5AG069400 Rh5BG066200 Rh5CG077400 Rh5DG065400 Rh7AG201600
rosa_wichuraiana	Rw1G005600 Rw5G006480 Rw7G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	216, 228
AciI	CCGC	2 cut(s)	162, 245
AcsI	RAATTY	1 cut(s)	25
AcyI	GRCGYC	3 cut(s)	116, 213, 225
AfiI	CCNNNNNNNGG	1 cut(s)	168
AjnI	CCWGG	1 cut(s)	74
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	84
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	171
AvaII	GGWCC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	62
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	1 cut(s)	76
BcoDI	GTCTC	1 cut(s)	84
BglII	AGATCT	1 cut(s)	133
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	76
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	76
BmrI	ACTGGG	1 cut(s)	160
BmuI	ACTGGG	1 cut(s)	160
BplI	GAGNNNNNCTC	4 cut(s)	39, 71, 120, 152
BpmI	CTGGAG	1 cut(s)	58
BsaHI	GRCGYC	3 cut(s)	116, 213, 225
BsaI	GGTCTC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	85
BsaWI	WCCGGW	1 cut(s)	269
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 143, 173
Bsc4I	CCNNNNNNNGG	1 cut(s)	168
Bse1I	ACTGG	1 cut(s)	166
BseBI	CCWGG	1 cut(s)	76
BseDI	CCNNGG	1 cut(s)	85
BseLI	CCNNNNNNNGG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	166
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	62
BshFI	GGCC	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	270
BslI	CCNNNNNNNGG	1 cut(s)	168
BsmAI	GTCTC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	98
Bso31I	GGTCTC	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	133, 254
BspACI	CCGC	2 cut(s)	162, 245
BspANI	GGCC	1 cut(s)	98
BspQI	GCTCTTC	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	2 cut(s)	133, 254
BssNI	GRCGYC	3 cut(s)	116, 213, 225
Bst2UI	CCWGG	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	227
BstACI	GRCGYC	3 cut(s)	116, 213, 225
BstDSI	CCRYGG	1 cut(s)	85
BstKTI	GATC	2 cut(s)	136, 257
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	2 cut(s)	133, 254
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	98
BtgI	CCRYGG	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	171
CseI	GACGC	1 cut(s)	124
CspCI	CAANNNNNGTGG	2 cut(s)	167, 202
CviJI	RGCY	2 cut(s)	53, 98
CviKI_1	RGCY	2 cut(s)	53, 98
DpnI	GATC	2 cut(s)	135, 256
DpnII	GATC	2 cut(s)	133, 254
DraI	TTTAAA	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
EciI	GGCGGA	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	74
FaiI	YATR	2 cut(s)	7, 9
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FauNDI	CATATG	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	51
GsuI	CTGGAG	1 cut(s)	58
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	1 cut(s)	270
HgaI	GACGC	1 cut(s)	124
Hin1I	GRCGYC	3 cut(s)	116, 213, 225
HincII	GTYRAC	1 cut(s)	123
HindII	GTYRAC	1 cut(s)	123
HpaII	CCGG	1 cut(s)	270
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	1 cut(s)	281
Hpy188III	TCNNGA	3 cut(s)	112, 217, 229
Hpy8I	GTNNAC	1 cut(s)	123
Hpy99I	CGWCG	3 cut(s)	68, 215, 230
HpyAV	CCTTC	1 cut(s)	22
HpyCH4IV	ACGT	2 cut(s)	213, 225
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpySE526I	ACGT	2 cut(s)	213, 225
Hsp92I	GRCGYC	3 cut(s)	116, 213, 225
Kzo9I	GATC	2 cut(s)	133, 254
LguI	GCTCTTC	1 cut(s)	227
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	8 cut(s)	61, 88, 125, 139, 168, 176, 179, 230
Lsp1109I	GCAGC	1 cut(s)	62
MaeII	ACGT	2 cut(s)	213, 225
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	2 cut(s)	135, 256
MboI	GATC	2 cut(s)	133, 254
MboII	GAAGA	2 cut(s)	143, 244
MflI	RGATCY	1 cut(s)	133
MluCI	AATT	1 cut(s)	25
MnlI	CCTC	6 cut(s)	82, 152, 158, 169, 184, 235
MseI	TTAA	1 cut(s)	29
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	1 cut(s)	76
MvaI	CCWGG	1 cut(s)	76
MwoI	GCNNNNNNNGC	1 cut(s)	56
NdeI	CATATG	1 cut(s)	7
NdeII	GATC	2 cut(s)	133, 254
PciSI	GCTCTTC	1 cut(s)	227
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PspPI	GGNCC	1 cut(s)	171
PsuI	RGATCY	1 cut(s)	133
SapI	GCTCTTC	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	2 cut(s)	133, 254
Sau96I	GGNCC	1 cut(s)	171
ScrFI	CCNGG	1 cut(s)	76
SetI	ASST	6 cut(s)	42, 55, 80, 150, 216, 228
SinI	GGWCC	1 cut(s)	171
Sse9I	AATT	1 cut(s)	25
SsiI	CCGC	2 cut(s)	162, 245
StyD4I	CCNGG	1 cut(s)	74
TaiI	ACGT	2 cut(s)	216, 228
TaqI	TCGA	1 cut(s)	144
TasI	AATT	1 cut(s)	25
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	1 cut(s)	173
TseI	GCWGC	1 cut(s)	50
TspGWI	ACGGA	2 cut(s)	60, 74
TspRI	CASTG	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	171
XapI	RAATTY	1 cut(s)	25
ZraI	GACGTC	2 cut(s)	214, 226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.