Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004034

Physical Location & Seq

Genomic Coordinates Reverse (-)

8672644 .. 8672889

Gene Structure 246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG100300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGCCGGAGGAGGCAACTCTCACCTATGACGGCGCCGCCATGTCTCTTCGCAGCAACATGGTTAAGACCAACTTCCTGACGCCGTTGACCAGAGGATATCTCTCCCTCGACCTTAACATCTCCTTTACCCAGTGGGCCTCCCACTTCGGCCGTCTAGTTGAGTTTCTCCATACCAACTTCCTAAACGACATCGTGAAGAGCAAGGAGGAGGCGGGGACATCGTTTGTTGTGTCCGGTGTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

81

Amino Acids

9.02

Weight (kDa)

5.5

Isoelectric Point (pI)

28.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12980 AT1G28360 AT1G28370 AT1G28370 AT5G44210
fragaria_vesca	FvH4_3g08790 FvH4_7g26410
malus_domestica	MD05G1311600.v1.1 MD10G1290900.v1.1
prunus_persica	Prupe.4G051200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0008971
rosa_laevigata	RLG00000031621
rosa_multiflora	Rmu_sc0001875.1_g000010 Rmu_sc0004677.1_g000023 Rmu_ssc0000183.1_g000016
rosa_roxburghii	Rroxscaffold_1G00067050 Rroxscaffold_1G00067680
rosa_rugosa	Rorug02G0224700
rosa_samantha	Rh2AG229600 Rh2CG100300 Rh2CG233700 Rh2DG237300 Rh3BG166700 Rh3DG166100 Rh4BG243800 Rh5AG069400 Rh5BG066200 Rh5CG077400 Rh5DG065400 Rh7AG201600
rosa_wichuraiana	Rw1G005600 Rw5G006480 Rw7G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	32
AciI	CCGC	2 cut(s)	36, 212
AcoI	YGGCCR	1 cut(s)	148
AcyI	GRCGYC	2 cut(s)	33, 80
Alw26I	GTCTC	1 cut(s)	48
AoxI	GGCC	2 cut(s)	135, 148
ApeKI	GCWGC	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	13
BanI	GGYRCC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	63
BceAI	ACGGC	3 cut(s)	46, 67, 135
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	1 cut(s)	155
BfoI	RGCGCY	1 cut(s)	36
BisI	GCNGC	2 cut(s)	36, 52
BlsI	GCNGC	2 cut(s)	37, 53
BmgT120I	GGNCC	1 cut(s)	135
BmiI	GGNNCC	1 cut(s)	34
BmrI	ACTGGG	1 cut(s)	124
BmuI	ACTGGG	1 cut(s)	124
BplI	GAGNNNNNCTC	2 cut(s)	84, 116
BsaHI	GRCGYC	2 cut(s)	33, 80
BsaWI	WCCGGW	1 cut(s)	233
Bse1I	ACTGG	1 cut(s)	130
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	2 cut(s)	23, 221
BseX3I	CGGCCG	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	2 cut(s)	137, 150
BshNI	GGYRCC	1 cut(s)	32
BsiEI	CGRYCG	1 cut(s)	151
BsiSI	CCGG	2 cut(s)	5, 234
BslFI	GGGAC	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	48
BsmFI	GGGAC	1 cut(s)	229
BsnI	GGCC	2 cut(s)	137, 150
BspACI	CCGC	2 cut(s)	36, 212
BspANI	GGCC	2 cut(s)	137, 150
BspLI	GGNNCC	1 cut(s)	34
BspQI	GCTCTTC	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	130
BssNI	GRCGYC	2 cut(s)	33, 80
Bst6I	CTCTTC	2 cut(s)	51, 191
BstACI	GRCGYC	2 cut(s)	33, 80
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstMAI	GTCTC	1 cut(s)	48
BstMCI	CGRYCG	1 cut(s)	151
BstV1I	GCAGC	1 cut(s)	63
BstZI	CGGCCG	1 cut(s)	148
BsuRI	GGCC	2 cut(s)	137, 150
BtsIMutI	CAGTG	1 cut(s)	137
CfoI	GCGC	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	135
CseI	GACGC	1 cut(s)	88
CviAII	CATG	2 cut(s)	40, 58
CviJI	RGCY	2 cut(s)	137, 150
CviKI_1	RGCY	2 cut(s)	137, 150
DinI	GGCGCC	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	148
EagI	CGGCCG	1 cut(s)	148
Eam1104I	CTCTTC	2 cut(s)	51, 191
EarI	CTCTTC	2 cut(s)	51, 191
EclXI	CGGCCG	1 cut(s)	148
Eco32I	GATATC	1 cut(s)	98
Eco52I	CGGCCG	1 cut(s)	148
EcoRV	GATATC	1 cut(s)	98
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
FaeI	CATG	2 cut(s)	43, 61
FaiI	YATR	4 cut(s)	27, 41, 59, 171
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	2 cut(s)	39, 57
FauI	CCCGC	1 cut(s)	205
Fnu4HI	GCNGC	2 cut(s)	36, 52
Fsp4HI	GCNGC	2 cut(s)	36, 52
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	2 cut(s)	36, 52
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	137, 150
HapII	CCGG	2 cut(s)	5, 234
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	2 cut(s)	33, 80
Hin1II	CATG	2 cut(s)	43, 61
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HpaII	CCGG	2 cut(s)	5, 234
HphI	GGTGA	1 cut(s)	13
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	2 cut(s)	76, 193
Hpy8I	GTNNAC	1 cut(s)	87
Hsp92I	GRCGYC	2 cut(s)	33, 80
Hsp92II	CATG	2 cut(s)	43, 61
HspAI	GCGC	1 cut(s)	33
KasI	GGCGCC	1 cut(s)	32
LguI	GCTCTTC	1 cut(s)	191
LpnPI	CCDG	4 cut(s)	18, 89, 103, 143
Lsp1109I	GCAGC	1 cut(s)	63
MaeI	CTAG	1 cut(s)	155
MboII	GAAGA	2 cut(s)	38, 208
Mly113I	GGCGCC	1 cut(s)	33
MnlI	CCTC	6 cut(s)	4, 86, 116, 148, 199, 202
MseI	TTAA	2 cut(s)	63, 114
MspI	CCGG	2 cut(s)	5, 234
NarI	GGCGCC	1 cut(s)	33
NlaIII	CATG	2 cut(s)	43, 61
NlaIV	GGNNCC	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	191
PkrI	GCNGC	2 cut(s)	37, 53
PluTI	GGCGCC	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	34
PspPI	GGNCC	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	63, 114
SatI	GCNGC	2 cut(s)	36, 52
Sau96I	GGNCC	1 cut(s)	135
SetI	ASST	2 cut(s)	26, 114
SfoI	GGCGCC	1 cut(s)	34
SsiI	CCGC	2 cut(s)	36, 212
SspDI	GGCGCC	1 cut(s)	32
SspMI	CTAG	1 cut(s)	155
TaqI	TCGA	1 cut(s)	108
TauI	GCSGC	1 cut(s)	38
Tru1I	TTAA	2 cut(s)	63, 114
Tru9I	TTAA	2 cut(s)	63, 114
TscAI	CASTG	1 cut(s)	137
TseI	GCWGC	1 cut(s)	51
TspRI	CASTG	1 cut(s)	137
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.