Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004034

Physical Location & Seq

Genomic Coordinates Forward (+)

2449358 .. 2451371

Gene Structure 2014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G051200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCGACTGCTTCTTCATCTCGCGAGGGCCACTACAGAGGCGTAAGGAAGAGGCCGTGGGGCCGATACGCCGCCGAAATCCGAGACCCTTGGAAGAAGACCAGGGTTTGGTTGGGTACATTCGACACACCCGAAGAAGCTGCTCTCGCTTATGACGGCGCAGCCAGATCACTCCGCGGCGCCAAGGCCAAGACCAACTTCCCGGCGCCCGTTCCCGGCGGTCTCTCTCTGGACCTCAACATGCCCTCCGCCGCCCACTGGGCGTCTCACTCCGGCCGCTTGGTCGAGTTCCTCCACACAGGCGTCTTGAACGACATGAGCTGCGGCGATGCAACACCCGATACGACGTCGTTGGTGAGCAAGAGGGAACAACCTCAACCTCCTGTTGGTGTTGTAGGAAATGTTGGCGGCGTCGCAGGTGGTACGGTCACAGAGGGTTCGAGTACGGCGTCGTATTTAGGGCTTGTACGACGTGGCCTGCCTATTGACCTCAATGAGCCCCCACCCTTGTGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

173

Amino Acids

18.3

Weight (kDa)

9.2

Isoelectric Point (pI)

54.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12980 AT1G28360 AT1G28370 AT1G28370 AT5G44210
fragaria_vesca	FvH4_3g08790 FvH4_7g26410
malus_domestica	MD05G1311600.v1.1 MD10G1290900.v1.1
prunus_persica	Prupe.4G051200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0008971
rosa_laevigata	RLG00000031621
rosa_multiflora	Rmu_sc0001875.1_g000010 Rmu_sc0004677.1_g000023 Rmu_ssc0000183.1_g000016
rosa_roxburghii	Rroxscaffold_1G00067050 Rroxscaffold_1G00067680
rosa_rugosa	Rorug02G0224700
rosa_samantha	Rh2AG229600 Rh2CG100300 Rh2CG233700 Rh2DG237300 Rh3BG166700 Rh3DG166100 Rh4BG243800 Rh5AG069400 Rh5BG066200 Rh5CG077400 Rh5DG065400 Rh7AG201600
rosa_wichuraiana	Rw1G005600 Rw5G006480 Rw7G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	407
AatII	GACGTC	1 cut(s)	350
Acc36I	ACCTGC	1 cut(s)	407
AccB1I	GGYRCC	2 cut(s)	179, 205
AccB7I	CCANNNNNTGG	1 cut(s)	108
AccII	CGCG	2 cut(s)	24, 177
AciI	CCGC	9 cut(s)	72, 175, 177, 219, 249, 252, 277, 324, 408
AcoI	YGGCCR	1 cut(s)	274
AcyI	GRCGYC	7 cut(s)	180, 206, 263, 303, 347, 411, 449
AfaI	GTAC	4 cut(s)	118, 424, 445, 468
AfiI	CCNNNNNNNGG	4 cut(s)	108, 215, 258, 386
AgsI	TTSAA	1 cut(s)	310
AjiI	CACGTC	1 cut(s)	473
AjnI	CCWGG	1 cut(s)	101
AjuI	GAANNNNNNNTTGG	2 cut(s)	182, 214
AleI	CACNNNNGTG	1 cut(s)	508
AluBI	AGCT	2 cut(s)	140, 321
AluI	AGCT	2 cut(s)	140, 321
Alw26I	GTCTC	3 cut(s)	78, 227, 270
AoxI	GGCC	6 cut(s)	28, 53, 61, 186, 274, 475
ApeKI	GCWGC	3 cut(s)	140, 161, 321
AspLEI	GCGC	3 cut(s)	161, 182, 208
AspS9I	GGNCC	3 cut(s)	28, 61, 232
AsuC2I	CCSGG	2 cut(s)	203, 216
AsuHPI	GGTGA	1 cut(s)	367
AvaII	GGWCC	1 cut(s)	232
BanI	GGYRCC	2 cut(s)	179, 205
BanII	GRGCYC	1 cut(s)	501
BbsI	GAAGAC	1 cut(s)	104
BbvI	GCAGC	3 cut(s)	127, 173, 308
BceAI	ACGGC	3 cut(s)	40, 172, 462
BcgI	CGANNNNNNTGC	2 cut(s)	122, 156
BciT130I	CCWGG	1 cut(s)	103
BcnI	CCSGG	2 cut(s)	203, 216
BcoDI	GTCTC	3 cut(s)	78, 227, 270
BfmI	CTRYAG	1 cut(s)	34
BfoI	RGCGCY	2 cut(s)	183, 209
BfuAI	ACCTGC	1 cut(s)	407
BglI	GCCNNNNNGGC	1 cut(s)	260
BisI	GCNGC	9 cut(s)	72, 141, 162, 178, 252, 277, 322, 325, 409
BlsI	GCNGC	9 cut(s)	73, 142, 163, 179, 253, 278, 323, 326, 410
Bme1390I	CCNGG	3 cut(s)	103, 203, 216
Bme18I	GGWCC	1 cut(s)	232
BmgBI	CACGTC	1 cut(s)	473
BmgT120I	GGNCC	3 cut(s)	28, 61, 232
BmiI	GGNNCC	3 cut(s)	62, 181, 207
BmrFI	CCNGG	3 cut(s)	103, 203, 216
BmrI	ACTGGG	1 cut(s)	268
BmsI	GCATC	1 cut(s)	319
BmuI	ACTGGG	1 cut(s)	268
BpiI	GAAGAC	1 cut(s)	104
BpuMI	CCSGG	2 cut(s)	203, 216
BsaHI	GRCGYC	7 cut(s)	180, 206, 263, 303, 347, 411, 449
BsaI	GGTCTC	2 cut(s)	78, 227
BsaJI	CCNNGG	5 cut(s)	56, 89, 102, 175, 183
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bsc4I	CCNNNNNNNGG	4 cut(s)	108, 215, 258, 386
Bse1I	ACTGG	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	5 cut(s)	56, 89, 102, 175, 183
BseLI	CCNNNNNNNGG	4 cut(s)	108, 215, 258, 386
BseNI	ACTGG	1 cut(s)	263
BseX3I	CGGCCG	1 cut(s)	274
BseXI	GCAGC	3 cut(s)	127, 173, 308
Bsh1236I	CGCG	2 cut(s)	24, 177
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	6 cut(s)	30, 55, 63, 188, 276, 477
BshNI	GGYRCC	2 cut(s)	179, 205
BsiEI	CGRYCG	1 cut(s)	277
BsiSI	CCGG	3 cut(s)	203, 216, 273
BslI	CCNNNNNNNGG	4 cut(s)	108, 215, 258, 386
BsmAI	GTCTC	3 cut(s)	78, 227, 270
BsmBI	CGTCTC	1 cut(s)	270
BsnI	GGCC	6 cut(s)	30, 55, 63, 188, 276, 477
Bso31I	GGTCTC	2 cut(s)	78, 227
Bsp1286I	GDGCHC	1 cut(s)	501
Bsp143I	GATC	1 cut(s)	167
Bsp68I	TCGCGA	1 cut(s)	24
BspACI	CCGC	9 cut(s)	72, 175, 177, 219, 249, 252, 277, 324, 408
BspANI	GGCC	6 cut(s)	30, 55, 63, 188, 276, 477
BspFNI	CGCG	2 cut(s)	24, 177
BspLI	GGNNCC	3 cut(s)	62, 181, 207
BspMI	ACCTGC	1 cut(s)	407
BspT107I	GGYRCC	2 cut(s)	179, 205
BspTNI	GGTCTC	2 cut(s)	78, 227
BsrI	ACTGG	1 cut(s)	263
BssECI	CCNNGG	5 cut(s)	56, 89, 102, 175, 183
BssMI	GATC	1 cut(s)	167
BssNI	GRCGYC	7 cut(s)	180, 206, 263, 303, 347, 411, 449
BssT1I	CCWWGG	2 cut(s)	89, 183
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	44
BstACI	GRCGYC	7 cut(s)	180, 206, 263, 303, 347, 411, 449
BstC8I	GCNNGC	1 cut(s)	479
BstDSI	CCRYGG	2 cut(s)	56, 175
BstFNI	CGCG	2 cut(s)	24, 177
BstH2I	RGCGCY	2 cut(s)	183, 209
BstHHI	GCGC	3 cut(s)	161, 182, 208
BstKTI	GATC	1 cut(s)	170
BstMAI	GTCTC	3 cut(s)	78, 227, 270
BstMBI	GATC	1 cut(s)	167
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 260
BstNI	CCWGG	1 cut(s)	103
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	3 cut(s)	101, 201, 214
BstSFI	CTRYAG	1 cut(s)	34
BstUI	CGCG	2 cut(s)	24, 177
BstV1I	GCAGC	3 cut(s)	127, 173, 308
BstV2I	GAAGAC	1 cut(s)	104
BstXI	CCANNNNNNTGG	1 cut(s)	510
BstZI	CGGCCG	1 cut(s)	274
BsuRI	GGCC	6 cut(s)	30, 55, 63, 188, 276, 477
BtgI	CCRYGG	2 cut(s)	56, 175
BtgZI	GCGATG	1 cut(s)	342
BtrI	CACGTC	1 cut(s)	473
BtsIMutI	CAGTG	1 cut(s)	256
BtuMI	TCGCGA	1 cut(s)	24
BveI	ACCTGC	1 cut(s)	407
Cac8I	GCNNGC	1 cut(s)	479
CfoI	GCGC	3 cut(s)	161, 182, 208
Cfr13I	GGNCC	3 cut(s)	28, 61, 232
Cfr42I	CCGCGG	1 cut(s)	178
CseI	GACGC	4 cut(s)	252, 292, 400, 438
Csp6I	GTAC	4 cut(s)	117, 423, 444, 467
CviAII	CATG	2 cut(s)	241, 316
CviQI	GTAC	4 cut(s)	117, 423, 444, 467
DinI	GGCGCC	2 cut(s)	181, 207
DpnI	GATC	1 cut(s)	169
DpnII	GATC	1 cut(s)	167
EaeI	YGGCCR	1 cut(s)	274
EagI	CGGCCG	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
EciI	GGCGGA	1 cut(s)	238
EclXI	CGGCCG	1 cut(s)	274
Eco130I	CCWWGG	2 cut(s)	89, 183
Eco24I	GRGCYC	1 cut(s)	501
Eco31I	GGTCTC	2 cut(s)	78, 227
Eco47I	GGWCC	1 cut(s)	232
Eco52I	CGGCCG	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	101
EcoT14I	CCWWGG	2 cut(s)	89, 183
EcoT38I	GRGCYC	1 cut(s)	501
EgeI	GGCGCC	2 cut(s)	181, 207
EheI	GGCGCC	2 cut(s)	181, 207
ErhI	CCWWGG	2 cut(s)	89, 183
Esp3I	CGTCTC	1 cut(s)	270
FaeI	CATG	2 cut(s)	244, 319
FaiI	YATR	3 cut(s)	153, 242, 317
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FatI	CATG	2 cut(s)	240, 315
Fnu4HI	GCNGC	9 cut(s)	72, 141, 162, 178, 252, 277, 322, 325, 409
FriOI	GRGCYC	1 cut(s)	501
Fsp4HI	GCNGC	9 cut(s)	72, 141, 162, 178, 252, 277, 322, 325, 409
GlaI	GCGC	3 cut(s)	160, 181, 207
GluI	GCNGC	9 cut(s)	72, 141, 162, 178, 252, 277, 322, 325, 409
HaeII	RGCGCY	2 cut(s)	183, 209
HaeIII	GGCC	6 cut(s)	30, 55, 63, 188, 276, 477
HapII	CCGG	3 cut(s)	203, 216, 273
HgaI	GACGC	4 cut(s)	252, 292, 400, 438
HhaI	GCGC	3 cut(s)	161, 182, 208
Hin1I	GRCGYC	7 cut(s)	180, 206, 263, 303, 347, 411, 449
Hin1II	CATG	2 cut(s)	244, 319
Hin6I	GCGC	3 cut(s)	159, 180, 206
HinP1I	GCGC	3 cut(s)	159, 180, 206
HpaII	CCGG	3 cut(s)	203, 216, 273
HphI	GGTGA	1 cut(s)	367
Hpy188I	TCNGA	1 cut(s)	83
Hpy188III	TCNNGA	3 cut(s)	23, 230, 307
Hpy99I	CGWCG	5 cut(s)	349, 352, 416, 454, 474
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	2 cut(s)	347, 472
HpyCH4V	TGCA	1 cut(s)	332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 260
HpySE526I	ACGT	2 cut(s)	347, 472
Hsp92I	GRCGYC	7 cut(s)	180, 206, 263, 303, 347, 411, 449
Hsp92II	CATG	2 cut(s)	244, 319
HspAI	GCGC	3 cut(s)	159, 180, 206
KasI	GGCGCC	2 cut(s)	179, 205
KspI	CCGCGG	1 cut(s)	178
Kzo9I	GATC	1 cut(s)	167
Lsp1109I	GCAGC	3 cut(s)	127, 173, 308
LweI	GCATC	1 cut(s)	319
MaeII	ACGT	2 cut(s)	347, 472
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	1 cut(s)	169
MboI	GATC	1 cut(s)	167
MboII	GAAGA	5 cut(s)	6, 61, 106, 109, 146
MhlI	GDGCHC	1 cut(s)	501
Mly113I	GGCGCC	2 cut(s)	180, 206
MslI	CAYNNNNRTG	1 cut(s)	508
MspA1I	CMGCKG	1 cut(s)	177
MspI	CCGG	3 cut(s)	203, 216, 273
MspR9I	CCNGG	3 cut(s)	103, 203, 216
MvaI	CCWGG	1 cut(s)	103
MvnI	CGCG	2 cut(s)	24, 177
MwoI	GCNNNNNNNGC	2 cut(s)	146, 260
NarI	GGCGCC	2 cut(s)	180, 206
NciI	CCSGG	2 cut(s)	203, 216
NdeII	GATC	1 cut(s)	167
NlaIII	CATG	2 cut(s)	244, 319
NlaIV	GGNNCC	3 cut(s)	62, 181, 207
NmuCI	GTSAC	1 cut(s)	427
NruI	TCGCGA	1 cut(s)	24
NspI	RCATGY	1 cut(s)	244
OliI	CACNNNNGTG	1 cut(s)	508
PaqCI	CACCTGC	1 cut(s)	407
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 446
PflMI	CCANNNNNTGG	1 cut(s)	108
PkrI	GCNGC	9 cut(s)	73, 142, 163, 179, 253, 278, 323, 326, 410
PluTI	GGCGCC	2 cut(s)	183, 209
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	3 cut(s)	62, 181, 207
PspPI	GGNCC	3 cut(s)	28, 61, 232
RruI	TCGCGA	1 cut(s)	24
RsaI	GTAC	4 cut(s)	118, 424, 445, 468
RsaNI	GTAC	4 cut(s)	117, 423, 444, 467
RseI	CAYNNNNRTG	1 cut(s)	508
SacII	CCGCGG	1 cut(s)	178
SatI	GCNGC	9 cut(s)	72, 141, 162, 178, 252, 277, 322, 325, 409
Sau3AI	GATC	1 cut(s)	167
Sau96I	GGNCC	3 cut(s)	28, 61, 232
ScrFI	CCNGG	3 cut(s)	103, 203, 216
SduI	GDGCHC	1 cut(s)	501
SetI	ASST	9 cut(s)	142, 237, 323, 350, 376, 382, 421, 475, 492
SfaNI	GCATC	1 cut(s)	319
SfcI	CTRYAG	1 cut(s)	34
SfoI	GGCGCC	2 cut(s)	181, 207
Sfr303I	CCGCGG	1 cut(s)	178
SgrBI	CCGCGG	1 cut(s)	178
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	508
SsiI	CCGC	9 cut(s)	72, 175, 177, 219, 249, 252, 277, 324, 408
SspDI	GGCGCC	2 cut(s)	179, 205
StyD4I	CCNGG	3 cut(s)	101, 201, 214
StyI	CCWWGG	2 cut(s)	89, 183
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	2 cut(s)	350, 475
TaqI	TCGA	3 cut(s)	123, 285, 440
TauI	GCSGC	6 cut(s)	74, 180, 254, 279, 327, 411
TscAI	CASTG	1 cut(s)	263
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	3 cut(s)	140, 161, 321
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	1 cut(s)	6
TspRI	CASTG	1 cut(s)	263
Van91I	CCANNNNNTGG	1 cut(s)	108
VpaK11BI	GGWCC	1 cut(s)	232
XceI	RCATGY	1 cut(s)	244
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
ZraI	GACGTC	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.