Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004034

Physical Location & Seq

Genomic Coordinates Reverse (-)

5138375 .. 5139499

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g08790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCGGGTTCAGTTCCCGGCCAGCCTCATTACCGAGGAGTGAGGAAGAGGCCGTGGGGGCGGTACGCGGCGGAGATCAGAGACCCGTGGAAGAAGACACGTGTCTGGCTCGGTACATTCGACACACCGGAGGAGGCAGCTCTCGCCTACGACGGCGCCGCCAGGTCACTCCGCGGCAACAAGGCCAAGACCAACTTCCCGGCGCCGCTGACGAGAGGAGGAGGAGGAGGAGAAGACCTCTCCCTCGACCTCAACGTCTCCTCCGCCCAGTGGGCCTCCCACTCCGGCCGTCTCGTCGAGTTCCTCCACACCGGCGTCCTGAAAGACGTCGCGAAGAGCGAGAACGCGGCGGCGGCGCCGTCGTTCGTGGTGTCCAGGGCTCCTCGGGCTCCGGTTGTGGGCAGCAGCTTGGTGCAGGAAGGGTCCAGCACGGCGTCGTATCTGGGGTTCGTCCGACGTGGCCTCCCCATTGATCTCAACGAGCCTCCTCCGTTGTGGCTCTGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

170

Amino Acids

18.12

Weight (kDa)

9.77

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	9 - 60	1.9e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12980 AT1G28360 AT1G28370 AT1G28370 AT5G44210
fragaria_vesca	FvH4_3g08790 FvH4_7g26410
malus_domestica	MD05G1311600.v1.1 MD10G1290900.v1.1
prunus_persica	Prupe.4G051200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0008971
rosa_laevigata	RLG00000031621
rosa_multiflora	Rmu_sc0001875.1_g000010 Rmu_sc0004677.1_g000023 Rmu_ssc0000183.1_g000016
rosa_roxburghii	Rroxscaffold_1G00067050 Rroxscaffold_1G00067680
rosa_rugosa	Rorug02G0224700
rosa_samantha	Rh2AG229600 Rh2CG100300 Rh2CG233700 Rh2DG237300 Rh3BG166700 Rh3DG166100 Rh4BG243800 Rh5AG069400 Rh5BG066200 Rh5CG077400 Rh5DG065400 Rh7AG201600
rosa_wichuraiana	Rw1G005600 Rw5G006480 Rw7G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
AatII	GACGTC	1 cut(s)	330
AccB1I	GGYRCC	3 cut(s)	155, 202, 355
AccII	CGCG	4 cut(s)	68, 174, 332, 347
AcoI	YGGCCR	2 cut(s)	19, 286
AcvI	CACGTG	1 cut(s)	101
AcyI	GRCGYC	6 cut(s)	156, 203, 315, 327, 356, 434
AfaI	GTAC	2 cut(s)	65, 115
AfiI	CCNNNNNNNGG	2 cut(s)	270, 398
AflIII	ACRYGT	2 cut(s)	98, 100
AjiI	CACGTC	1 cut(s)	458
AjnI	CCWGG	2 cut(s)	161, 374
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AluBI	AGCT	2 cut(s)	140, 408
AluI	AGCT	2 cut(s)	140, 408
Alw26I	GTCTC	3 cut(s)	75, 262, 296
Ama87I	CYCGRG	1 cut(s)	384
AoxI	GGCC	6 cut(s)	19, 50, 183, 273, 286, 460
ApeKI	GCWGC	3 cut(s)	137, 402, 405
AspLEI	GCGC	3 cut(s)	158, 205, 358
AspS9I	GGNCC	2 cut(s)	273, 423
AsuC2I	CCSGG	2 cut(s)	18, 200
AvaI	CYCGRG	1 cut(s)	384
AvaII	GGWCC	1 cut(s)	423
BanI	GGYRCC	3 cut(s)	155, 202, 355
BanII	GRGCYC	2 cut(s)	382, 391
BbrPI	CACGTG	1 cut(s)	101
BbsI	GAAGAC	2 cut(s)	101, 240
BbvI	GCAGC	3 cut(s)	149, 414, 417
BceAI	ACGGC	5 cut(s)	37, 169, 273, 343, 447
BciT130I	CCWGG	2 cut(s)	163, 376
BcnI	CCSGG	2 cut(s)	18, 200
BcoDI	GTCTC	3 cut(s)	75, 262, 296
BfoI	RGCGCY	3 cut(s)	159, 206, 359
BglI	GCCNNNNNGGC	2 cut(s)	58, 272
Bme1390I	CCNGG	4 cut(s)	18, 163, 200, 376
Bme18I	GGWCC	1 cut(s)	423
BmeT110I	CYCGRG	1 cut(s)	384
BmgBI	CACGTC	1 cut(s)	458
BmgT120I	GGNCC	2 cut(s)	273, 423
BmiI	GGNNCC	6 cut(s)	157, 204, 357, 381, 390, 424
BmrFI	CCNGG	4 cut(s)	18, 163, 200, 376
BmrI	ACTGGG	1 cut(s)	262
BmuI	ACTGGG	1 cut(s)	262
BoxI	GACNNNNGTC	1 cut(s)	101
BpiI	GAAGAC	2 cut(s)	101, 240
BplI	GAGNNNNNCTC	2 cut(s)	222, 254
BpuMI	CCSGG	2 cut(s)	18, 200
BsaAI	YACGTR	1 cut(s)	101
BsaHI	GRCGYC	6 cut(s)	156, 203, 315, 327, 356, 434
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	6 cut(s)	34, 53, 86, 172, 375, 383
BsaWI	WCCGGW	2 cut(s)	127, 391
BsaXI	ACNNNNNCTCC	4 cut(s)	245, 275, 447, 477
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 398
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	1 cut(s)	268
BseBI	CCWGG	2 cut(s)	163, 376
BseDI	CCNNGG	6 cut(s)	34, 53, 86, 172, 375, 383
BseLI	CCNNNNNNNGG	2 cut(s)	270, 398
BseNI	ACTGG	1 cut(s)	268
BseX3I	CGGCCG	1 cut(s)	286
BseXI	GCAGC	3 cut(s)	149, 414, 417
BsgI	GTGCAG	1 cut(s)	434
Bsh1236I	CGCG	4 cut(s)	68, 174, 332, 347
Bsh1285I	CGRYCG	1 cut(s)	289
BshFI	GGCC	6 cut(s)	21, 52, 185, 275, 288, 462
BshNI	GGYRCC	3 cut(s)	155, 202, 355
BsiEI	CGRYCG	1 cut(s)	289
BsiHKCI	CYCGRG	1 cut(s)	384
BsiSI	CCGG	6 cut(s)	18, 128, 200, 285, 312, 392
BslI	CCNNNNNNNGG	2 cut(s)	270, 398
BsmAI	GTCTC	3 cut(s)	75, 262, 296
BsmBI	CGTCTC	2 cut(s)	262, 296
BsnI	GGCC	6 cut(s)	21, 52, 185, 275, 288, 462
Bso31I	GGTCTC	1 cut(s)	75
BsoBI	CYCGRG	1 cut(s)	384
Bsp1286I	GDGCHC	2 cut(s)	382, 391
Bsp143I	GATC	2 cut(s)	75, 472
Bsp68I	TCGCGA	1 cut(s)	332
BspANI	GGCC	6 cut(s)	21, 52, 185, 275, 288, 462
BspFNI	CGCG	4 cut(s)	68, 174, 332, 347
BspLI	GGNNCC	6 cut(s)	157, 204, 357, 381, 390, 424
BspQI	GCTCTTC	1 cut(s)	329
BspT107I	GGYRCC	3 cut(s)	155, 202, 355
BspTNI	GGTCTC	1 cut(s)	75
BsrFI	RCCGGY	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	268
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	6 cut(s)	34, 53, 86, 172, 375, 383
BssMI	GATC	2 cut(s)	75, 472
BssNI	GRCGYC	6 cut(s)	156, 203, 315, 327, 356, 434
Bst2UI	CCWGG	2 cut(s)	163, 376
Bst6I	CTCTTC	2 cut(s)	41, 329
BstACI	GRCGYC	6 cut(s)	156, 203, 315, 327, 356, 434
BstBAI	YACGTR	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	23
BstDSI	CCRYGG	3 cut(s)	53, 86, 172
BstFNI	CGCG	4 cut(s)	68, 174, 332, 347
BstH2I	RGCGCY	3 cut(s)	159, 206, 359
BstHHI	GCGC	3 cut(s)	158, 205, 358
BstKTI	GATC	2 cut(s)	78, 475
BstMAI	GTCTC	3 cut(s)	75, 262, 296
BstMBI	GATC	2 cut(s)	75, 472
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	5 cut(s)	58, 143, 272, 353, 386
BstNI	CCWGG	2 cut(s)	163, 376
BstPAI	GACNNNNGTC	1 cut(s)	101
BstSCI	CCNGG	4 cut(s)	16, 161, 198, 374
BstUI	CGCG	4 cut(s)	68, 174, 332, 347
BstV1I	GCAGC	3 cut(s)	149, 414, 417
BstV2I	GAAGAC	2 cut(s)	101, 240
BstZI	CGGCCG	1 cut(s)	286
BsuRI	GGCC	6 cut(s)	21, 52, 185, 275, 288, 462
BtgI	CCRYGG	3 cut(s)	53, 86, 172
BtrI	CACGTC	1 cut(s)	458
BtsIMutI	CAGTG	1 cut(s)	275
BtuMI	TCGCGA	1 cut(s)	332
Cac8I	GCNNGC	1 cut(s)	23
CfoI	GCGC	3 cut(s)	158, 205, 358
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	2 cut(s)	273, 423
Cfr42I	CCGCGG	1 cut(s)	175
CseI	GACGC	2 cut(s)	304, 423
Csp6I	GTAC	2 cut(s)	64, 114
CviQI	GTAC	2 cut(s)	64, 114
DinI	GGCGCC	3 cut(s)	157, 204, 357
DpnI	GATC	2 cut(s)	77, 474
DpnII	GATC	2 cut(s)	75, 472
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
EaeI	YGGCCR	2 cut(s)	19, 286
EagI	CGGCCG	1 cut(s)	286
Eam1104I	CTCTTC	2 cut(s)	41, 329
EarI	CTCTTC	2 cut(s)	41, 329
EciI	GGCGGA	2 cut(s)	86, 253
EclXI	CGGCCG	1 cut(s)	286
Eco24I	GRGCYC	2 cut(s)	382, 391
Eco31I	GGTCTC	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	423
Eco52I	CGGCCG	1 cut(s)	286
Eco72I	CACGTG	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	384
EcoRII	CCWGG	2 cut(s)	161, 374
EcoT38I	GRGCYC	2 cut(s)	382, 391
EgeI	GGCGCC	3 cut(s)	157, 204, 357
EheI	GGCGCC	3 cut(s)	157, 204, 357
Esp3I	CGTCTC	2 cut(s)	262, 296
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FriOI	GRGCYC	2 cut(s)	382, 391
GlaI	GCGC	3 cut(s)	157, 204, 357
HaeII	RGCGCY	3 cut(s)	159, 206, 359
HaeIII	GGCC	6 cut(s)	21, 52, 185, 275, 288, 462
HapII	CCGG	6 cut(s)	18, 128, 200, 285, 312, 392
HgaI	GACGC	2 cut(s)	304, 423
HhaI	GCGC	3 cut(s)	158, 205, 358
Hin1I	GRCGYC	6 cut(s)	156, 203, 315, 327, 356, 434
Hin6I	GCGC	3 cut(s)	156, 203, 356
HinP1I	GCGC	3 cut(s)	156, 203, 356
HpaII	CCGG	6 cut(s)	18, 128, 200, 285, 312, 392
Hpy188I	TCNGA	2 cut(s)	80, 455
Hpy188III	TCNNGA	2 cut(s)	319, 331
Hpy99I	CGWCG	6 cut(s)	155, 299, 332, 364, 439, 459
HpyAV	CCTTC	1 cut(s)	413
HpyCH4IV	ACGT	4 cut(s)	100, 255, 327, 457
HpyCH4V	TGCA	1 cut(s)	415
HpyF10VI	GCNNNNNNNGC	5 cut(s)	58, 143, 272, 353, 386
HpySE526I	ACGT	4 cut(s)	100, 255, 327, 457
Hsp92I	GRCGYC	6 cut(s)	156, 203, 315, 327, 356, 434
HspAI	GCGC	3 cut(s)	156, 203, 356
KasI	GGCGCC	3 cut(s)	155, 202, 355
KspI	CCGCGG	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	75, 472
LguI	GCTCTTC	1 cut(s)	329
LmnI	GCTCC	2 cut(s)	385, 394
Lsp1109I	GCAGC	3 cut(s)	149, 414, 417
MaeII	ACGT	4 cut(s)	100, 255, 327, 457
MaeIII	GTNAC	2 cut(s)	165, 503
MalI	GATC	2 cut(s)	77, 474
MboI	GATC	2 cut(s)	75, 472
MboII	GAAGA	5 cut(s)	58, 103, 106, 245, 346
MhlI	GDGCHC	2 cut(s)	382, 391
Mly113I	GGCGCC	3 cut(s)	156, 203, 356
MmeI	TCCRAC	1 cut(s)	478
MspA1I	CMGCKG	2 cut(s)	174, 208
MspI	CCGG	6 cut(s)	18, 128, 200, 285, 312, 392
MspR9I	CCNGG	4 cut(s)	18, 163, 200, 376
MvaI	CCWGG	2 cut(s)	163, 376
MvnI	CGCG	4 cut(s)	68, 174, 332, 347
MwoI	GCNNNNNNNGC	5 cut(s)	58, 143, 272, 353, 386
NarI	GGCGCC	3 cut(s)	156, 203, 356
NciI	CCSGG	2 cut(s)	18, 200
NdeII	GATC	2 cut(s)	75, 472
NlaIV	GGNNCC	6 cut(s)	157, 204, 357, 381, 390, 424
NmuCI	GTSAC	1 cut(s)	165
NruI	TCGCGA	1 cut(s)	332
PciSI	GCTCTTC	1 cut(s)	329
PcsI	WCGNNNNNNNCGW	3 cut(s)	117, 252, 336
PluTI	GGCGCC	3 cut(s)	159, 206, 359
PmaCI	CACGTG	1 cut(s)	101
PmlI	CACGTG	1 cut(s)	101
Ppu21I	YACGTR	1 cut(s)	101
PshAI	GACNNNNGTC	1 cut(s)	101
Psp6I	CCWGG	2 cut(s)	161, 374
PspCI	CACGTG	1 cut(s)	101
PspGI	CCWGG	2 cut(s)	161, 374
PspN4I	GGNNCC	6 cut(s)	157, 204, 357, 381, 390, 424
PspPI	GGNCC	2 cut(s)	273, 423
PsrI	GAACNNNNNNTAC	2 cut(s)	431, 463
RruI	TCGCGA	1 cut(s)	332
RsaI	GTAC	2 cut(s)	65, 115
RsaNI	GTAC	2 cut(s)	64, 114
SacII	CCGCGG	1 cut(s)	175
SapI	GCTCTTC	1 cut(s)	329
Sau3AI	GATC	2 cut(s)	75, 472
Sau96I	GGNCC	2 cut(s)	273, 423
ScrFI	CCNGG	4 cut(s)	18, 163, 200, 376
SduI	GDGCHC	2 cut(s)	382, 391
SetI	ASST	9 cut(s)	103, 142, 167, 240, 252, 258, 330, 410, 460
SfoI	GGCGCC	3 cut(s)	157, 204, 357
Sfr303I	CCGCGG	1 cut(s)	175
SgrAI	CRCCGGYG	1 cut(s)	311
SgrBI	CCGCGG	1 cut(s)	175
SinI	GGWCC	1 cut(s)	423
SspDI	GGCGCC	3 cut(s)	155, 202, 355
StyD4I	CCNGG	4 cut(s)	16, 161, 198, 374
TaiI	ACGT	4 cut(s)	103, 258, 330, 460
TaqI	TCGA	3 cut(s)	120, 246, 297
TauI	GCSGC	7 cut(s)	71, 161, 177, 208, 350, 353, 356
TscAI	CASTG	1 cut(s)	275
TseFI	GTSAC	1 cut(s)	165
TseI	GCWGC	3 cut(s)	137, 402, 405
Tsp45I	GTSAC	1 cut(s)	165
TspGWI	ACGGA	1 cut(s)	480
TspRI	CASTG	1 cut(s)	275
VpaK11BI	GGWCC	1 cut(s)	423
ZraI	GACGTC	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.