Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004034

Physical Location & Seq

Genomic Coordinates Reverse (-)

28150494 .. 28150784

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G023460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGACCGTGGAAGAAGACGAGGGTGTGGCACATTTGATACGCCGGAGAAGGTAGCTCTCGCCTACAACGGCGCCGGCGCCGCTAGGTCTCTTCACGGCAGCAAGGCCAAGAACAACTTCCTAGCGCCGTTGACCAGAGGAGATCTCTCCCTCGACCTCAACATCTCCTCCACCCAGTGGGCCTCCCACTCTGGCCGTCTGGTTGAGTTTCTCCACATTTGCATCCTGAATGACATCGTGAAGATCATGGAGGCGGCAGGGACGTCGTTTGTTGTGTCCAGTGTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

96

Amino Acids

10.29

Weight (kDa)

9.23

Isoelectric Point (pI)

29.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12980 AT1G28360 AT1G28370 AT1G28370 AT5G44210
fragaria_vesca	FvH4_3g08790 FvH4_7g26410
malus_domestica	MD05G1311600.v1.1 MD10G1290900.v1.1
prunus_persica	Prupe.4G051200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0008971
rosa_laevigata	RLG00000031621
rosa_multiflora	Rmu_sc0001875.1_g000010 Rmu_sc0004677.1_g000023 Rmu_ssc0000183.1_g000016
rosa_roxburghii	Rroxscaffold_1G00067050 Rroxscaffold_1G00067680
rosa_rugosa	Rorug02G0224700
rosa_samantha	Rh2AG229600 Rh2CG100300 Rh2CG233700 Rh2DG237300 Rh3BG166700 Rh3DG166100 Rh4BG243800 Rh5AG069400 Rh5BG066200 Rh5CG077400 Rh5DG065400 Rh7AG201600
rosa_wichuraiana	Rw1G005600 Rw5G006480 Rw7G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	266
AccB1I	GGYRCC	2 cut(s)	71, 77
AccB7I	CCANNNNNTGG	1 cut(s)	177
AciI	CCGC	2 cut(s)	81, 254
AcoI	YGGCCR	1 cut(s)	193
AcyI	GRCGYC	3 cut(s)	72, 78, 263
AdeI	CACNNNGTG	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	177
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	93
AoxI	GGCC	3 cut(s)	105, 180, 193
ApeKI	GCWGC	1 cut(s)	99
Asp700I	GAANNNNTTC	1 cut(s)	116
AspLEI	GCGC	3 cut(s)	74, 80, 127
AspS9I	GGNCC	2 cut(s)	4, 180
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	2 cut(s)	71, 77
BbsI	GAAGAC	1 cut(s)	22
BbvI	GCAGC	1 cut(s)	111
BceAI	ACGGC	4 cut(s)	85, 112, 112, 180
BcgI	CGANNNNNNTGC	2 cut(s)	246, 280
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	2 cut(s)	84, 122
BfoI	RGCGCY	3 cut(s)	75, 81, 128
BglII	AGATCT	1 cut(s)	142
BisI	GCNGC	3 cut(s)	81, 100, 255
BlsI	GCNGC	3 cut(s)	82, 101, 256
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 180
BmiI	GGNNCC	2 cut(s)	73, 79
BmrI	ACTGGG	1 cut(s)	169
BmsI	GCATC	1 cut(s)	231
BmuI	ACTGGG	1 cut(s)	169
BpiI	GAAGAC	1 cut(s)	22
BplI	GAGNNNNNCTC	2 cut(s)	129, 161
BsaHI	GRCGYC	3 cut(s)	72, 78, 263
BsaI	GGTCTC	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	7
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	177
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	2 cut(s)	175, 279
BseDI	CCNNGG	1 cut(s)	7
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	177
BseNI	ACTGG	2 cut(s)	175, 279
BseRI	GAGGAG	2 cut(s)	153, 157
BseXI	GCAGC	1 cut(s)	111
BshFI	GGCC	3 cut(s)	107, 182, 195
BshNI	GGYRCC	2 cut(s)	71, 77
BsiSI	CCGG	2 cut(s)	44, 75
BslFI	GGGAC	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	177
BsmAI	GTCTC	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	274
BsnI	GGCC	3 cut(s)	107, 182, 195
Bso31I	GGTCTC	1 cut(s)	93
Bsp143I	GATC	2 cut(s)	142, 243
BspACI	CCGC	2 cut(s)	81, 254
BspANI	GGCC	3 cut(s)	107, 182, 195
BspLI	GGNNCC	2 cut(s)	73, 79
BspT107I	GGYRCC	2 cut(s)	71, 77
BspTNI	GGTCTC	1 cut(s)	93
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	2 cut(s)	175, 279
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	7
BssMI	GATC	2 cut(s)	142, 243
BssNI	GRCGYC	3 cut(s)	72, 78, 263
Bst4CI	ACNGT	1 cut(s)	8
Bst6I	CTCTTC	1 cut(s)	96
BstACI	GRCGYC	3 cut(s)	72, 78, 263
BstC8I	GCNNGC	1 cut(s)	76
BstDSI	CCRYGG	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	222
BstH2I	RGCGCY	3 cut(s)	75, 81, 128
BstHHI	GCGC	3 cut(s)	74, 80, 127
BstKTI	GATC	2 cut(s)	145, 246
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	2 cut(s)	142, 243
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstV1I	GCAGC	1 cut(s)	111
BstV2I	GAAGAC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BsuRI	GGCC	3 cut(s)	107, 182, 195
BtgI	CCRYGG	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	222
BtsIMutI	CAGTG	2 cut(s)	182, 286
Cac8I	GCNNGC	1 cut(s)	76
CfoI	GCGC	3 cut(s)	74, 80, 127
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	4, 180
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	4 cut(s)	56, 107, 182, 195
CviKI_1	RGCY	4 cut(s)	56, 107, 182, 195
DinI	GGCGCC	2 cut(s)	73, 79
DpnI	GATC	2 cut(s)	144, 245
DpnII	GATC	2 cut(s)	142, 243
DraIII	CACNNNGTG	1 cut(s)	177
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	4
EgeI	GGCGCC	2 cut(s)	73, 79
EheI	GGCGCC	2 cut(s)	73, 79
FaeI	CATG	1 cut(s)	250
FaiI	YATR	1 cut(s)	248
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FaqI	GGGAC	1 cut(s)	274
FatI	CATG	1 cut(s)	246
Fnu4HI	GCNGC	3 cut(s)	81, 100, 255
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	3 cut(s)	81, 100, 255
FspBI	CTAG	2 cut(s)	84, 122
GlaI	GCGC	3 cut(s)	73, 79, 126
GluI	GCNGC	3 cut(s)	81, 100, 255
HaeII	RGCGCY	3 cut(s)	75, 81, 128
HaeIII	GGCC	3 cut(s)	107, 182, 195
HapII	CCGG	2 cut(s)	44, 75
HhaI	GCGC	3 cut(s)	74, 80, 127
Hin1I	GRCGYC	3 cut(s)	72, 78, 263
Hin1II	CATG	1 cut(s)	250
Hin6I	GCGC	3 cut(s)	72, 78, 125
HinP1I	GCGC	3 cut(s)	72, 78, 125
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HpaII	CCGG	2 cut(s)	44, 75
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	1 cut(s)	290
Hpy188III	TCNNGA	2 cut(s)	226, 238
Hpy8I	GTNNAC	1 cut(s)	132
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	1 cut(s)	222
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpySE526I	ACGT	1 cut(s)	263
Hsp92I	GRCGYC	3 cut(s)	72, 78, 263
Hsp92II	CATG	1 cut(s)	250
HspAI	GCGC	3 cut(s)	72, 78, 125
KasI	GGCGCC	2 cut(s)	71, 77
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	142, 243
LpnPI	CCDG	8 cut(s)	57, 88, 148, 177, 185, 188, 239, 243
Lsp1109I	GCAGC	1 cut(s)	111
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	2 cut(s)	84, 122
MaeII	ACGT	1 cut(s)	263
MalI	GATC	2 cut(s)	144, 245
MboI	GATC	2 cut(s)	142, 243
MboII	GAAGA	4 cut(s)	24, 27, 83, 253
MflI	RGATCY	1 cut(s)	142
Mly113I	GGCGCC	2 cut(s)	72, 78
MnlI	CCTC	7 cut(s)	14, 131, 161, 167, 178, 193, 244
MreI	CGCCGGCG	1 cut(s)	74
MroNI	GCCGGC	1 cut(s)	74
MroXI	GAANNNNTTC	1 cut(s)	116
MspI	CCGG	2 cut(s)	44, 75
MwoI	GCNNNNNNNGC	1 cut(s)	80
NaeI	GCCGGC	1 cut(s)	76
NarI	GGCGCC	2 cut(s)	72, 78
NdeII	GATC	2 cut(s)	142, 243
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	2 cut(s)	73, 79
PdiI	GCCGGC	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	116
PflMI	CCANNNNNTGG	1 cut(s)	177
PkrI	GCNGC	3 cut(s)	82, 101, 256
PluTI	GGCGCC	2 cut(s)	75, 81
PspN4I	GGNNCC	2 cut(s)	73, 79
PspPI	GGNCC	2 cut(s)	4, 180
PsuI	RGATCY	1 cut(s)	142
SatI	GCNGC	3 cut(s)	81, 100, 255
Sau3AI	GATC	2 cut(s)	142, 243
Sau96I	GGNCC	2 cut(s)	4, 180
SetI	ASST	5 cut(s)	54, 58, 89, 159, 266
SfaNI	GCATC	1 cut(s)	231
SfoI	GGCGCC	2 cut(s)	73, 79
SgrAI	CRCCGGYG	1 cut(s)	74
SinI	GGWCC	1 cut(s)	4
SsiI	CCGC	2 cut(s)	81, 254
SspDI	GGCGCC	2 cut(s)	71, 77
SspMI	CTAG	2 cut(s)	84, 122
TaaI	ACNGT	1 cut(s)	8
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	1 cut(s)	153
TauI	GCSGC	2 cut(s)	83, 257
TscAI	CASTG	2 cut(s)	182, 286
TseI	GCWGC	1 cut(s)	99
TspRI	CASTG	2 cut(s)	182, 286
Van91I	CCANNNNNTGG	1 cut(s)	177
VpaK11BI	GGWCC	1 cut(s)	4
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	2 cut(s)	84, 122
ZraI	GACGTC	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.