Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004034

Physical Location & Seq

Genomic Coordinates Forward (+)

19965083 .. 19965646

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g26410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCTGGGGGTTCAGTTTCCGGGCAGCAGCCGCATTACCGAGGAGTGAGGAAGAGGCCGTGGGGGCGCTACGCCGCGGAGATAAGAGACCCGTGGAAGAAGACACGTGTCTGGCTCGGCACGTTCGACTCGCCGGAAGAGGCAGCTCTCGCCTACGACGACGCCGCCAGGGCACTCCGCGGCAACAAGGCCAAGACCAACTTCAAGCTGCCGCCGTTAACCAGAGGAGGAGGAGGAGGAGTGGCAGACCTCTCCCTCAACCTCAACGTCTCCTCCGCCCAGCGGGCCTCCCACTCCGGCCGTCTCGTCGAGTTCCTCCGCACCGGCGTCCTGAAGAAGAGTGAGAACGCGGCGGCGGGGCCGTCGTTCGTTGTGTCCAGGGTTGGTCCTCGGCCTCCGGTTGTGGGCAGCAGCTTGGTGGAGGAAGGATCCAGCACTTTGTCGTATATGGGGTTCGTCCGACGTGGCCTGCCAATTGATCTCAACGAGCCTCCTCCGTTGTGGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

170

Amino Acids

18.18

Weight (kDa)

10.4

Isoelectric Point (pI)

54.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	11 - 62	1.9e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12980 AT1G28360 AT1G28370 AT1G28370 AT5G44210
fragaria_vesca	FvH4_3g08790 FvH4_7g26410
malus_domestica	MD05G1311600.v1.1 MD10G1290900.v1.1
prunus_persica	Prupe.4G051200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0008971
rosa_laevigata	RLG00000031621
rosa_multiflora	Rmu_sc0001875.1_g000010 Rmu_sc0004677.1_g000023 Rmu_ssc0000183.1_g000016
rosa_roxburghii	Rroxscaffold_1G00067050 Rroxscaffold_1G00067680
rosa_rugosa	Rorug02G0224700
rosa_samantha	Rh2AG229600 Rh2CG100300 Rh2CG233700 Rh2DG237300 Rh3BG166700 Rh3DG166100 Rh4BG243800 Rh5AG069400 Rh5BG066200 Rh5CG077400 Rh5DG065400 Rh7AG201600
rosa_wichuraiana	Rw1G005600 Rw5G006480 Rw7G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	77, 180, 350
AclWI	GGATC	2 cut(s)	423, 436
AcoI	YGGCCR	1 cut(s)	298
AcuI	CTGAAG	1 cut(s)	353
AcvI	CACGTG	1 cut(s)	107
AcyI	GRCGYC	2 cut(s)	162, 327
AfiI	CCNNNNNNNGG	2 cut(s)	282, 404
AflIII	ACRYGT	2 cut(s)	104, 106
AgsI	TTSAA	1 cut(s)	205
AjiI	CACGTC	1 cut(s)	464
AjnI	CCWGG	2 cut(s)	167, 377
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AluBI	AGCT	3 cut(s)	146, 208, 414
AluI	AGCT	3 cut(s)	146, 208, 414
Alw26I	GTCTC	3 cut(s)	81, 274, 308
AlwI	GGATC	2 cut(s)	423, 436
AoxI	GGCC	7 cut(s)	56, 189, 285, 298, 359, 392, 466
ApeKI	GCWGC	6 cut(s)	25, 28, 143, 208, 408, 411
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	3 cut(s)	285, 359, 386
AsuC2I	CCSGG	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	386
BaeGI	GKGCMC	1 cut(s)	175
BamHI	GGATCC	1 cut(s)	428
BbrPI	CACGTG	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	107
BbvI	GCAGC	6 cut(s)	37, 40, 155, 195, 420, 423
BceAI	ACGGC	4 cut(s)	43, 199, 285, 346
BciT130I	CCWGG	2 cut(s)	169, 379
BcnI	CCSGG	1 cut(s)	22
BcoDI	GTCTC	3 cut(s)	81, 274, 308
BfmI	CTRYAG	1 cut(s)	506
BfoI	RGCGCY	1 cut(s)	70
BglI	GCCNNNNNGGC	3 cut(s)	64, 170, 284
Bme1390I	CCNGG	3 cut(s)	22, 169, 379
Bme18I	GGWCC	1 cut(s)	386
BmgBI	CACGTC	1 cut(s)	464
BmgT120I	GGNCC	3 cut(s)	285, 359, 386
BmiI	GGNNCC	2 cut(s)	360, 430
BmrFI	CCNGG	3 cut(s)	22, 169, 379
BoxI	GACNNNNGTC	1 cut(s)	107
BpiI	GAAGAC	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	22
BsaAI	YACGTR	1 cut(s)	107
BsaHI	GRCGYC	2 cut(s)	162, 327
BsaI	GGTCTC	1 cut(s)	81
BsaJI	CCNNGG	8 cut(s)	40, 59, 75, 92, 168, 178, 378, 389
BsaWI	WCCGGW	1 cut(s)	397
BsaXI	ACNNNNNCTCC	4 cut(s)	225, 255, 257, 287
Bsc4I	CCNNNNNNNGG	2 cut(s)	282, 404
Bse118I	RCCGGY	1 cut(s)	323
BseBI	CCWGG	2 cut(s)	169, 379
BseDI	CCNNGG	8 cut(s)	40, 59, 75, 92, 168, 178, 378, 389
BseLI	CCNNNNNNNGG	2 cut(s)	282, 404
BseRI	GAGGAG	8 cut(s)	57, 240, 243, 246, 249, 252, 262, 483
BseSI	GKGCMC	1 cut(s)	175
BseX3I	CGGCCG	1 cut(s)	298
BseXI	GCAGC	6 cut(s)	37, 40, 155, 195, 420, 423
BseYI	CCCAGC	2 cut(s)	5, 279
Bsh1236I	CGCG	3 cut(s)	77, 180, 350
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	7 cut(s)	58, 191, 287, 300, 361, 394, 468
BsiEI	CGRYCG	1 cut(s)	301
BsiSI	CCGG	5 cut(s)	21, 134, 297, 324, 398
BslI	CCNNNNNNNGG	2 cut(s)	282, 404
BsmAI	GTCTC	3 cut(s)	81, 274, 308
BsmBI	CGTCTC	2 cut(s)	274, 308
BsnI	GGCC	7 cut(s)	58, 191, 287, 300, 361, 394, 468
Bso31I	GGTCTC	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	2 cut(s)	428, 478
BspANI	GGCC	7 cut(s)	58, 191, 287, 300, 361, 394, 468
BspFNI	CGCG	3 cut(s)	77, 180, 350
BspLI	GGNNCC	2 cut(s)	360, 430
BspPI	GGATC	2 cut(s)	423, 436
BspTNI	GGTCTC	1 cut(s)	81
BsrFI	RCCGGY	1 cut(s)	323
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	8 cut(s)	40, 59, 75, 92, 168, 178, 378, 389
BssMI	GATC	2 cut(s)	428, 478
BssNI	GRCGYC	2 cut(s)	162, 327
Bst2UI	CCWGG	2 cut(s)	169, 379
Bst6I	CTCTTC	3 cut(s)	47, 132, 332
BstACI	GRCGYC	2 cut(s)	162, 327
BstBAI	YACGTR	1 cut(s)	107
BstC8I	GCNNGC	2 cut(s)	285, 470
BstDSI	CCRYGG	4 cut(s)	59, 75, 92, 178
BstFNI	CGCG	3 cut(s)	77, 180, 350
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	2 cut(s)	431, 481
BstMAI	GTCTC	3 cut(s)	81, 274, 308
BstMBI	GATC	2 cut(s)	428, 478
BstMCI	CGRYCG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 64, 149, 170, 284
BstNI	CCWGG	2 cut(s)	169, 379
BstPAI	GACNNNNGTC	1 cut(s)	107
BstSCI	CCNGG	3 cut(s)	20, 167, 377
BstSFI	CTRYAG	1 cut(s)	506
BstSLI	GKGCMC	1 cut(s)	175
BstUI	CGCG	3 cut(s)	77, 180, 350
BstV1I	GCAGC	6 cut(s)	37, 40, 155, 195, 420, 423
BstV2I	GAAGAC	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	428
BstZI	CGGCCG	1 cut(s)	298
BsuRI	GGCC	7 cut(s)	58, 191, 287, 300, 361, 394, 468
BtgI	CCRYGG	4 cut(s)	59, 75, 92, 178
BtrI	CACGTC	1 cut(s)	464
Cac8I	GCNNGC	2 cut(s)	285, 470
CfoI	GCGC	1 cut(s)	69
Cfr10I	RCCGGY	1 cut(s)	323
Cfr13I	GGNCC	3 cut(s)	285, 359, 386
Cfr42I	CCGCGG	2 cut(s)	78, 181
CseI	GACGC	2 cut(s)	170, 316
DpnI	GATC	2 cut(s)	430, 480
DpnII	GATC	2 cut(s)	428, 478
EaeI	YGGCCR	1 cut(s)	298
EagI	CGGCCG	1 cut(s)	298
Eam1104I	CTCTTC	3 cut(s)	47, 132, 332
EarI	CTCTTC	3 cut(s)	47, 132, 332
EciI	GGCGGA	1 cut(s)	265
EclXI	CGGCCG	1 cut(s)	298
Eco31I	GGTCTC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	386
Eco52I	CGGCCG	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	353
Eco72I	CACGTG	1 cut(s)	107
EcoRII	CCWGG	2 cut(s)	167, 377
Esp3I	CGTCTC	2 cut(s)	274, 308
FaiI	YATR	2 cut(s)	447, 449
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FauI	CCCGC	2 cut(s)	276, 349
GlaI	GCGC	1 cut(s)	68
GsaI	CCCAGC	2 cut(s)	9, 283
HaeII	RGCGCY	1 cut(s)	70
HaeIII	GGCC	7 cut(s)	58, 191, 287, 300, 361, 394, 468
HapII	CCGG	5 cut(s)	21, 134, 297, 324, 398
HgaI	GACGC	2 cut(s)	170, 316
HhaI	GCGC	1 cut(s)	69
Hin1I	GRCGYC	2 cut(s)	162, 327
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HincII	GTYRAC	1 cut(s)	219
HindII	GTYRAC	1 cut(s)	219
HinfI	GANTC	1 cut(s)	128
HpaI	GTTAAC	1 cut(s)	219
HpaII	CCGG	5 cut(s)	21, 134, 297, 324, 398
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	1 cut(s)	461
Hpy188III	TCNNGA	1 cut(s)	331
Hpy8I	GTNNAC	1 cut(s)	219
Hpy99I	CGWCG	5 cut(s)	161, 164, 311, 367, 465
HpyAV	CCTTC	1 cut(s)	419
HpyCH4IV	ACGT	4 cut(s)	106, 122, 267, 463
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 64, 149, 170, 284
HpySE526I	ACGT	4 cut(s)	106, 122, 267, 463
Hsp92I	GRCGYC	2 cut(s)	162, 327
HspAI	GCGC	1 cut(s)	67
KspAI	GTTAAC	1 cut(s)	219
KspI	CCGCGG	2 cut(s)	78, 181
Kzo9I	GATC	2 cut(s)	428, 478
Lsp1109I	GCAGC	6 cut(s)	37, 40, 155, 195, 420, 423
MaeII	ACGT	4 cut(s)	106, 122, 267, 463
MalI	GATC	2 cut(s)	430, 480
MboI	GATC	2 cut(s)	428, 478
MboII	GAAGA	6 cut(s)	64, 109, 112, 149, 346, 349
MfeI	CAATTG	1 cut(s)	474
MflI	RGATCY	1 cut(s)	428
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	1 cut(s)	474
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	484
MseI	TTAA	1 cut(s)	218
MspA1I	CMGCKG	3 cut(s)	77, 180, 283
MspI	CCGG	5 cut(s)	21, 134, 297, 324, 398
MspR9I	CCNGG	3 cut(s)	22, 169, 379
MunI	CAATTG	1 cut(s)	474
MvaI	CCWGG	2 cut(s)	169, 379
MvnI	CGCG	3 cut(s)	77, 180, 350
MwoI	GCNNNNNNNGC	5 cut(s)	31, 64, 149, 170, 284
NciI	CCSGG	1 cut(s)	22
NdeII	GATC	2 cut(s)	428, 478
NlaIV	GGNNCC	2 cut(s)	360, 430
NmeAIII	GCCGAG	2 cut(s)	96, 370
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 156
PleI	GAGTC	1 cut(s)	122
PmaCI	CACGTG	1 cut(s)	107
PmlI	CACGTG	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	122
Ppu21I	YACGTR	1 cut(s)	107
PshAI	GACNNNNGTC	1 cut(s)	107
Psp6I	CCWGG	2 cut(s)	167, 377
PspCI	CACGTG	1 cut(s)	107
PspFI	CCCAGC	2 cut(s)	5, 279
PspGI	CCWGG	2 cut(s)	167, 377
PspN4I	GGNNCC	2 cut(s)	360, 430
PspPI	GGNCC	3 cut(s)	285, 359, 386
PsrI	GAACNNNNNNTAC	2 cut(s)	437, 469
PsuI	RGATCY	1 cut(s)	428
SacII	CCGCGG	2 cut(s)	78, 181
SaqAI	TTAA	1 cut(s)	218
Sau3AI	GATC	2 cut(s)	428, 478
Sau96I	GGNCC	3 cut(s)	285, 359, 386
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	3 cut(s)	22, 169, 379
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	9 cut(s)	109, 125, 148, 210, 252, 264, 270, 416, 466
SfcI	CTRYAG	1 cut(s)	506
Sfr303I	CCGCGG	2 cut(s)	78, 181
SgrAI	CRCCGGYG	1 cut(s)	323
SgrBI	CCGCGG	2 cut(s)	78, 181
SinI	GGWCC	1 cut(s)	386
Sse9I	AATT	1 cut(s)	474
StyD4I	CCNGG	3 cut(s)	20, 167, 377
TaiI	ACGT	4 cut(s)	109, 125, 270, 466
TaqI	TCGA	2 cut(s)	126, 309
TasI	AATT	1 cut(s)	474
TauI	GCSGC	7 cut(s)	34, 77, 167, 183, 214, 353, 356
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TseI	GCWGC	6 cut(s)	25, 28, 143, 208, 408, 411
TspGWI	ACGGA	1 cut(s)	486
VpaK11BI	GGWCC	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.