Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004034

Physical Location & Seq

Genomic Coordinates Reverse (-)

11201174 .. 11201497

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G005600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGGCTGGACCGTGGAAGAAGATGAGGGCGTGGCTCGACACATTCCACACGCTAGAGCGGCAGCTTTAGCCTGCGACACTGCCGCTAGGTCTCTCCTTGACAACAAGGCCAAGGCCAATTTCCCGGCGCTGTTGACCAGAGGAGATCTCTCCCTTGACCTCAATGTCTCCTTCGCTAAATGGGCCTCCCACTCTAGCTGCCTGGTTGAGTTTCTCCACAACGACATCCTGAACGACGTAGTGAAGAATGAGGAGGCGGCGGGGACGTTGTTTGTTGTGTCCAGGGGTCCTCGGCCTTCAGTTGTGGGGAGTAGCTTAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

107

Amino Acids

11.44

Weight (kDa)

5.72

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12980 AT1G28360 AT1G28370 AT1G28370 AT5G44210
fragaria_vesca	FvH4_3g08790 FvH4_7g26410
malus_domestica	MD05G1311600.v1.1 MD10G1290900.v1.1
prunus_persica	Prupe.4G051200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0008971
rosa_laevigata	RLG00000031621
rosa_multiflora	Rmu_sc0001875.1_g000010 Rmu_sc0004677.1_g000023 Rmu_ssc0000183.1_g000016
rosa_roxburghii	Rroxscaffold_1G00067050 Rroxscaffold_1G00067680
rosa_rugosa	Rorug02G0224700
rosa_samantha	Rh2AG229600 Rh2CG100300 Rh2CG233700 Rh2DG237300 Rh3BG166700 Rh3DG166100 Rh4BG243800 Rh5AG069400 Rh5BG066200 Rh5CG077400 Rh5DG065400 Rh7AG201600
rosa_wichuraiana	Rw1G005600 Rw5G006480 Rw7G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AccBSI	CCGCTC	1 cut(s)	59
AciI	CCGC	4 cut(s)	59, 84, 257, 260
AcuI	CTGAAG	1 cut(s)	282
AjnI	CCWGG	2 cut(s)	201, 281
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
AluBI	AGCT	3 cut(s)	65, 198, 315
AluI	AGCT	3 cut(s)	65, 198, 315
Alw26I	GTCTC	2 cut(s)	96, 172
AoxI	GGCC	4 cut(s)	108, 114, 183, 293
ApeKI	GCWGC	2 cut(s)	62, 198
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	3 cut(s)	9, 183, 287
AsuC2I	CCSGG	1 cut(s)	125
AvaII	GGWCC	2 cut(s)	9, 287
BbvI	GCAGC	2 cut(s)	74, 185
BciT130I	CCWGG	2 cut(s)	203, 283
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	2 cut(s)	96, 172
BfaI	CTAG	4 cut(s)	54, 87, 195, 322
BfoI	RGCGCY	1 cut(s)	131
BglII	AGATCT	1 cut(s)	145
BisI	GCNGC	5 cut(s)	60, 63, 84, 199, 258
BlsI	GCNGC	5 cut(s)	61, 64, 85, 200, 259
Bme1390I	CCNGG	3 cut(s)	125, 203, 283
Bme18I	GGWCC	2 cut(s)	9, 287
BmgT120I	GGNCC	3 cut(s)	9, 183, 287
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	3 cut(s)	125, 203, 283
BplI	GAGNNNNNCTC	2 cut(s)	132, 164
BpuMI	CCSGG	1 cut(s)	125
BsaI	GGTCTC	1 cut(s)	96
BsaJI	CCNNGG	4 cut(s)	12, 111, 282, 290
BseBI	CCWGG	2 cut(s)	203, 283
BseDI	CCNNGG	4 cut(s)	12, 111, 282, 290
BseGI	GGATG	1 cut(s)	225
BseRI	GAGGAG	2 cut(s)	156, 266
BseXI	GCAGC	2 cut(s)	74, 185
BshFI	GGCC	4 cut(s)	110, 116, 185, 295
BsiSI	CCGG	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	277
BsmAI	GTCTC	2 cut(s)	96, 172
BsmFI	GGGAC	1 cut(s)	277
BsnI	GGCC	4 cut(s)	110, 116, 185, 295
Bso31I	GGTCTC	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	145
BspACI	CCGC	4 cut(s)	59, 84, 257, 260
BspANI	GGCC	4 cut(s)	110, 116, 185, 295
BspLI	GGNNCC	1 cut(s)	288
BspTNI	GGTCTC	1 cut(s)	96
BsrBI	CCGCTC	1 cut(s)	59
BssECI	CCNNGG	4 cut(s)	12, 111, 282, 290
BssMI	GATC	1 cut(s)	145
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	2 cut(s)	203, 283
Bst4CI	ACNGT	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	316
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	225
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	2 cut(s)	96, 172
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 68, 182
BstNI	CCWGG	2 cut(s)	203, 283
BstSCI	CCNGG	3 cut(s)	123, 201, 281
BstV1I	GCAGC	2 cut(s)	74, 185
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BsuRI	GGCC	4 cut(s)	110, 116, 185, 295
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	225
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	73
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	3 cut(s)	9, 183, 287
DdeI	CTNAG	1 cut(s)	316
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	111
Eco31I	GGTCTC	1 cut(s)	96
Eco47I	GGWCC	2 cut(s)	9, 287
Eco57I	CTGAAG	1 cut(s)	282
EcoO109I	RGGNCCY	1 cut(s)	287
EcoRII	CCWGG	2 cut(s)	201, 281
EcoT14I	CCWWGG	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	111
FaqI	GGGAC	1 cut(s)	277
FauI	CCCGC	1 cut(s)	253
Fnu4HI	GCNGC	5 cut(s)	60, 63, 84, 199, 258
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	5 cut(s)	60, 63, 84, 199, 258
FspBI	CTAG	4 cut(s)	54, 87, 195, 322
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	5 cut(s)	60, 63, 84, 199, 258
HaeII	RGCGCY	1 cut(s)	131
HaeIII	GGCC	4 cut(s)	110, 116, 185, 295
HapII	CCGG	1 cut(s)	125
HhaI	GCGC	1 cut(s)	130
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HpaII	CCGG	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	1 cut(s)	135
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	2 cut(s)	181, 306
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	2 cut(s)	237, 266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 68, 182
HpyF3I	CTNAG	1 cut(s)	316
HpySE526I	ACGT	2 cut(s)	237, 266
HspAI	GCGC	1 cut(s)	128
Kzo9I	GATC	1 cut(s)	145
LpnPI	CCDG	8 cut(s)	85, 138, 151, 188, 215, 242, 268, 295
Lsp1109I	GCAGC	2 cut(s)	74, 185
MaeI	CTAG	4 cut(s)	54, 87, 195, 322
MaeII	ACGT	2 cut(s)	237, 266
MalI	GATC	1 cut(s)	147
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	1 cut(s)	145
MboII	GAAGA	3 cut(s)	29, 32, 256
MflI	RGATCY	1 cut(s)	145
MluCI	AATT	1 cut(s)	118
MnlI	CCTC	7 cut(s)	19, 134, 170, 196, 244, 247, 300
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	3 cut(s)	125, 203, 283
MvaI	CCWGG	2 cut(s)	203, 283
MwoI	GCNNNNNNNGC	3 cut(s)	59, 68, 182
NciI	CCSGG	1 cut(s)	125
NdeII	GATC	1 cut(s)	145
NlaIV	GGNNCC	1 cut(s)	288
NmeAIII	GCCGAG	1 cut(s)	271
PkrI	GCNGC	5 cut(s)	61, 64, 85, 200, 259
PpuMI	RGGWCCY	1 cut(s)	287
Psp5II	RGGWCCY	1 cut(s)	287
Psp6I	CCWGG	2 cut(s)	201, 281
PspGI	CCWGG	2 cut(s)	201, 281
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	3 cut(s)	9, 183, 287
PspPPI	RGGWCCY	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	145
SatI	GCNGC	5 cut(s)	60, 63, 84, 199, 258
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	3 cut(s)	9, 183, 287
ScrFI	CCNGG	3 cut(s)	125, 203, 283
SetI	ASST	7 cut(s)	67, 92, 162, 200, 240, 269, 317
SinI	GGWCC	2 cut(s)	9, 287
Sse9I	AATT	1 cut(s)	118
SsiI	CCGC	4 cut(s)	59, 84, 257, 260
SspMI	CTAG	4 cut(s)	54, 87, 195, 322
StyD4I	CCNGG	3 cut(s)	123, 201, 281
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	2 cut(s)	240, 269
TaqI	TCGA	1 cut(s)	37
TasI	AATT	1 cut(s)	118
TauI	GCSGC	3 cut(s)	62, 86, 260
TscAI	CASTG	1 cut(s)	85
TseI	GCWGC	2 cut(s)	62, 198
TspRI	CASTG	1 cut(s)	85
VpaK11BI	GGWCC	2 cut(s)	9, 287
XspI	CTAG	4 cut(s)	54, 87, 195, 322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.