Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004034

Physical Location & Seq

Genomic Coordinates Reverse (-)

40921490 .. 40923187

Gene Structure 1698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG243800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGCCATCTCCCAAGATTGCAGCGTACTGTCCTTTGCAGCAAGATTTGGGGCACAAGAAACACGCAAATGGTGAAGCAGGTGCTCTGTTGTACTTGAGATTATGGCCGTCACATAACCATAAGCAGTCATTTGGTGCAAGCAAAGCATTCTCAGAGCAAAAAGAATTCAGAGTTCCGCACCAAGGCAAGATGGTGTTGGTCTCCAGTGCCAGCCAAGCTGAGATGTTCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

77

Amino Acids

8.59

Weight (kDa)

9.52

Isoelectric Point (pI)

71.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12980 AT1G28360 AT1G28370 AT1G28370 AT5G44210
fragaria_vesca	FvH4_3g08790 FvH4_7g26410
malus_domestica	MD05G1311600.v1.1 MD10G1290900.v1.1
prunus_persica	Prupe.4G051200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0008971
rosa_laevigata	RLG00000031621
rosa_multiflora	Rmu_sc0001875.1_g000010 Rmu_sc0004677.1_g000023 Rmu_ssc0000183.1_g000016
rosa_roxburghii	Rroxscaffold_1G00067050 Rroxscaffold_1G00067680
rosa_rugosa	Rorug02G0224700
rosa_samantha	Rh2AG229600 Rh2CG100300 Rh2CG233700 Rh2DG237300 Rh3BG166700 Rh3DG166100 Rh4BG243800 Rh5AG069400 Rh5BG066200 Rh5CG077400 Rh5DG065400 Rh7AG201600
rosa_wichuraiana	Rw1G005600 Rw5G006480 Rw7G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	68
Acc36I	ACCTGC	1 cut(s)	68
AciI	CCGC	1 cut(s)	176
AcoI	YGGCCR	1 cut(s)	104
AcsI	RAATTY	1 cut(s)	164
AfaI	GTAC	2 cut(s)	26, 92
AfiI	CCNNNNNNNGG	1 cut(s)	182
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	1 cut(s)	205
AoxI	GGCC	1 cut(s)	104
ApeKI	GCWGC	2 cut(s)	20, 37
ApoI	RAATTY	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	83
BaeGI	GKGCMC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	2 cut(s)	32, 49
BccI	CCATC	2 cut(s)	13, 184
BceAI	ACGGC	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	1 cut(s)	232
BfuAI	ACCTGC	1 cut(s)	68
BisI	GCNGC	2 cut(s)	21, 38
BlsI	GCNGC	2 cut(s)	22, 39
BpmI	CTGGAG	1 cut(s)	187
BpuEI	CTTGAG	1 cut(s)	115
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	181
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMII	CTCAG	2 cut(s)	165, 210
BseNI	ACTGG	1 cut(s)	204
BseSI	GKGCMC	1 cut(s)	54
BseXI	GCAGC	2 cut(s)	32, 49
BshFI	GGCC	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	205
BsmI	GAATGC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	106
Bso31I	GGTCTC	1 cut(s)	205
Bsp1286I	GDGCHC	2 cut(s)	54, 85
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	1 cut(s)	106
BspCNI	CTCAG	2 cut(s)	164, 211
BspMI	ACCTGC	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	181
Bst4CI	ACNGT	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	139, 211
BstDEI	CTNAG	2 cut(s)	151, 219
BstMAI	GTCTC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 215
BstSLI	GKGCMC	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	32, 49
BsuRI	GGCC	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	211
BveI	ACCTGC	1 cut(s)	68
Cac8I	GCNNGC	2 cut(s)	139, 211
Csp6I	GTAC	2 cut(s)	25, 91
CviJI	RGCY	3 cut(s)	106, 213, 218
CviKI_1	RGCY	3 cut(s)	106, 213, 218
CviQI	GTAC	2 cut(s)	25, 91
DdeI	CTNAG	2 cut(s)	151, 219
EaeI	YGGCCR	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	181
Eco31I	GGTCTC	1 cut(s)	205
EcoRI	GAATTC	1 cut(s)	164
EcoT14I	CCWWGG	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	181
FaiI	YATR	3 cut(s)	103, 114, 120
Fnu4HI	GCNGC	2 cut(s)	21, 38
Fsp4HI	GCNGC	2 cut(s)	21, 38
FspBI	CTAG	1 cut(s)	232
GluI	GCNGC	2 cut(s)	21, 38
GsuI	CTGGAG	1 cut(s)	187
HaeIII	GGCC	1 cut(s)	106
HphI	GGTGA	1 cut(s)	83
Hpy188I	TCNGA	2 cut(s)	154, 170
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4V	TGCA	3 cut(s)	20, 37, 137
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 215
HpyF3I	CTNAG	2 cut(s)	151, 219
LpnPI	CCDG	3 cut(s)	63, 217, 223
Lsp1109I	GCAGC	2 cut(s)	32, 49
MaeI	CTAG	1 cut(s)	232
MaeIII	GTNAC	1 cut(s)	108
MhlI	GDGCHC	2 cut(s)	54, 85
MluCI	AATT	1 cut(s)	164
MslI	CAYNNNNRTG	1 cut(s)	66
Mva1269I	GAATGC	1 cut(s)	146
MwoI	GCNNNNNNNGC	2 cut(s)	143, 215
NmuCI	GTSAC	1 cut(s)	108
PaqCI	CACCTGC	1 cut(s)	68
PctI	GAATGC	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	22, 39
RsaI	GTAC	2 cut(s)	26, 92
RsaNI	GTAC	2 cut(s)	25, 91
RseI	CAYNNNNRTG	1 cut(s)	66
SatI	GCNGC	2 cut(s)	21, 38
SduI	GDGCHC	2 cut(s)	54, 85
SetI	ASST	2 cut(s)	82, 220
SmiMI	CAYNNNNRTG	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	1 cut(s)	164
SsiI	CCGC	1 cut(s)	176
SspMI	CTAG	1 cut(s)	232
StyI	CCWWGG	1 cut(s)	181
TaaI	ACNGT	1 cut(s)	29
TasI	AATT	1 cut(s)	164
TatI	WGTACW	1 cut(s)	90
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	108
TseI	GCWGC	2 cut(s)	20, 37
Tsp45I	GTSAC	1 cut(s)	108
TspRI	CASTG	1 cut(s)	211
XapI	RAATTY	1 cut(s)	164
XspI	CTAG	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.