Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000183.1

Orthogroup ID

OG0004034

Physical Location & Seq

Genomic Coordinates Reverse (-)

76370 .. 76773

Gene Structure 404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000183.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atgccggaggaggcagctctcacctatgacggcgccgccacgtctcttagcggcaacaaggctaagaccaacttcctgacgccattgaccagaggatatctatccctcgaccttaacatctcctttgcccagtgggcctcccacttcagcagtctagttgagtttctccacaccaatgtcctaaacgacatcgtgaagagcaagaaggaggcagggacatcagtggaggttggagaggttgatggtagggattggttaggcgtcgggtcgggttgtgggctggaattggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

97

Amino Acids

10.35

Weight (kDa)

4.77

Isoelectric Point (pI)

14.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12980 AT1G28360 AT1G28370 AT1G28370 AT5G44210
fragaria_vesca	FvH4_3g08790 FvH4_7g26410
malus_domestica	MD05G1311600.v1.1 MD10G1290900.v1.1
prunus_persica	Prupe.4G051200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0008971
rosa_laevigata	RLG00000031621
rosa_multiflora	Rmu_sc0001875.1_g000010 Rmu_sc0004677.1_g000023 Rmu_ssc0000183.1_g000016
rosa_roxburghii	Rroxscaffold_1G00067050 Rroxscaffold_1G00067680
rosa_rugosa	Rorug02G0224700
rosa_samantha	Rh2AG229600 Rh2CG100300 Rh2CG233700 Rh2DG237300 Rh3BG166700 Rh3DG166100 Rh4BG243800 Rh5AG069400 Rh5BG066200 Rh5CG077400 Rh5DG065400 Rh7AG201600
rosa_wichuraiana	Rw1G005600 Rw5G006480 Rw7G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	32
AciI	CCGC	2 cut(s)	36, 51
AcuI	CTGAAG	1 cut(s)	130
AcyI	GRCGYC	3 cut(s)	33, 80, 261
AjiI	CACGTC	1 cut(s)	42
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	48
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	13
BanI	GGYRCC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	1 cut(s)	236
BceAI	ACGGC	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	1 cut(s)	155
BfoI	RGCGCY	1 cut(s)	36
BglI	GCCNNNNNGGC	1 cut(s)	134
BisI	GCNGC	3 cut(s)	15, 36, 52
BlsI	GCNGC	3 cut(s)	16, 37, 53
BmgBI	CACGTC	1 cut(s)	42
BmgT120I	GGNCC	1 cut(s)	135
BmiI	GGNNCC	1 cut(s)	34
BmrI	ACTGGG	1 cut(s)	124
BmuI	ACTGGG	1 cut(s)	124
BsaBI	GATNNNNATC	1 cut(s)	100
BsaHI	GRCGYC	3 cut(s)	33, 80, 261
Bse1I	ACTGG	1 cut(s)	130
Bse8I	GATNNNNATC	1 cut(s)	100
BseJI	GATNNNNATC	1 cut(s)	100
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	26
BshFI	GGCC	1 cut(s)	137
BshNI	GGYRCC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	48
BsmBI	CGTCTC	1 cut(s)	48
BsmFI	GGGAC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	137
BspACI	CCGC	2 cut(s)	36, 51
BspANI	GGCC	1 cut(s)	137
BspLI	GGNNCC	1 cut(s)	34
BspQI	GCTCTTC	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	130
BssNI	GRCGYC	3 cut(s)	33, 80, 261
Bst6I	CTCTTC	1 cut(s)	191
BstACI	GRCGYC	3 cut(s)	33, 80, 261
BstDEI	CTNAG	2 cut(s)	47, 63
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstMAI	GTCTC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	137
BtrI	CACGTC	1 cut(s)	42
BtsIMutI	CAGTG	2 cut(s)	137, 228
CfoI	GCGC	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	135
CseI	GACGC	2 cut(s)	88, 250
CviJI	RGCY	4 cut(s)	17, 62, 137, 280
CviKI_1	RGCY	4 cut(s)	17, 62, 137, 280
DdeI	CTNAG	2 cut(s)	47, 63
DinI	GGCGCC	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Eco32I	GATATC	1 cut(s)	98
Eco57I	CTGAAG	1 cut(s)	130
EcoRV	GATATC	1 cut(s)	98
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
Esp3I	CGTCTC	1 cut(s)	48
FaiI	YATR	1 cut(s)	27
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FaqI	GGGAC	1 cut(s)	229
Fnu4HI	GCNGC	3 cut(s)	15, 36, 52
Fsp4HI	GCNGC	3 cut(s)	15, 36, 52
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	3 cut(s)	15, 36, 52
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	1 cut(s)	5
HgaI	GACGC	2 cut(s)	88, 250
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	3 cut(s)	33, 80, 261
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	1 cut(s)	13
Hpy188III	TCNNGA	2 cut(s)	76, 193
Hpy99I	CGWCG	1 cut(s)	266
HpyAV	CCTTC	1 cut(s)	199
HpyCH4IV	ACGT	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	2 cut(s)	47, 63
HpySE526I	ACGT	1 cut(s)	41
Hsp92I	GRCGYC	3 cut(s)	33, 80, 261
HspAI	GCGC	1 cut(s)	33
KasI	GGCGCC	1 cut(s)	32
LguI	GCTCTTC	1 cut(s)	191
LpnPI	CCDG	6 cut(s)	18, 89, 103, 143, 198, 266
Lsp1109I	GCAGC	1 cut(s)	26
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	1 cut(s)	41
MboII	GAAGA	1 cut(s)	208
MluCI	AATT	1 cut(s)	284
Mly113I	GGCGCC	1 cut(s)	33
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	7 cut(s)	4, 86, 116, 148, 202, 220, 229
MseI	TTAA	1 cut(s)	114
MslI	CAYNNNNRTG	1 cut(s)	174
MspI	CCGG	1 cut(s)	5
MwoI	GCNNNNNNNGC	1 cut(s)	134
NarI	GGCGCC	1 cut(s)	33
NlaIV	GGNNCC	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	191
PkrI	GCNGC	3 cut(s)	16, 37, 53
PluTI	GGCGCC	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	34
PspPI	GGNCC	1 cut(s)	135
RseI	CAYNNNNRTG	1 cut(s)	174
SapI	GCTCTTC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	3 cut(s)	15, 36, 52
Sau96I	GGNCC	1 cut(s)	135
SetI	ASST	6 cut(s)	19, 26, 44, 114, 231, 240
SfoI	GGCGCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	174
Sse9I	AATT	1 cut(s)	284
SsiI	CCGC	2 cut(s)	36, 51
SspDI	GGCGCC	1 cut(s)	32
SspMI	CTAG	1 cut(s)	155
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	1 cut(s)	108
TasI	AATT	1 cut(s)	284
TauI	GCSGC	2 cut(s)	38, 54
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	2 cut(s)	137, 228
TseI	GCWGC	1 cut(s)	14
TspRI	CASTG	2 cut(s)	137, 228
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.