Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0004034

Physical Location & Seq

Genomic Coordinates Reverse (-)

14368659 .. 14368943

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG166700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGACCGTGGAAGAAGACGAAGGTGTGGCACATTCGACATGCCGGAGGAGGCAGCTCTCACCTATGACGGTGCCGCCAAGTCTCTCTGCGGCAACAAGGCCAAGACCAACTTCCTGACACCGTTGACCAGAGGATATCTCTCCCTCAACCTTAACATCTCCTCTGCCCAGTGGGCCTCCCACTCCAGCCGTCTAGTTGAGTTTCTCCACAACGGCGTCCTAAACGACGTCGTGAAGAGCAAGGAAGTGGCGGGGATGTCGTTTGTTGTGTCCAGTGTTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

94

Amino Acids

10.24

Weight (kDa)

9.44

Isoelectric Point (pI)

52.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12980 AT1G28360 AT1G28370 AT1G28370 AT5G44210
fragaria_vesca	FvH4_3g08790 FvH4_7g26410
malus_domestica	MD05G1311600.v1.1 MD10G1290900.v1.1
prunus_persica	Prupe.4G051200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0008971
rosa_laevigata	RLG00000031621
rosa_multiflora	Rmu_sc0001875.1_g000010 Rmu_sc0004677.1_g000023 Rmu_ssc0000183.1_g000016
rosa_roxburghii	Rroxscaffold_1G00067050 Rroxscaffold_1G00067680
rosa_rugosa	Rorug02G0224700
rosa_samantha	Rh2AG229600 Rh2CG100300 Rh2CG233700 Rh2DG237300 Rh3BG166700 Rh3DG166100 Rh4BG243800 Rh5AG069400 Rh5BG066200 Rh5CG077400 Rh5DG065400 Rh7AG201600
rosa_wichuraiana	Rw1G005600 Rw5G006480 Rw7G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	71
AciI	CCGC	3 cut(s)	75, 90, 251
AcyI	GRCGYC	2 cut(s)	216, 228
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	87
AoxI	GGCC	2 cut(s)	99, 174
ApeKI	GCWGC	1 cut(s)	53
AspS9I	GGNCC	2 cut(s)	4, 174
AsuHPI	GGTGA	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	22
BbvI	GCAGC	1 cut(s)	65
BceAI	ACGGC	2 cut(s)	174, 229
BcoDI	GTCTC	1 cut(s)	87
BfaI	CTAG	1 cut(s)	194
BglI	GCCNNNNNGGC	1 cut(s)	173
BisI	GCNGC	3 cut(s)	54, 75, 91
BlsI	GCNGC	3 cut(s)	55, 76, 92
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 174
BmiI	GGNNCC	1 cut(s)	73
BmrI	ACTGGG	1 cut(s)	163
BmuI	ACTGGG	1 cut(s)	163
BpiI	GAAGAC	1 cut(s)	22
BplI	GAGNNNNNCTC	2 cut(s)	123, 155
BpmI	CTGGAG	1 cut(s)	169
BsaHI	GRCGYC	2 cut(s)	216, 228
BsaJI	CCNNGG	1 cut(s)	7
Bse1I	ACTGG	2 cut(s)	169, 273
BseDI	CCNNGG	1 cut(s)	7
BseGI	GGATG	1 cut(s)	261
BseNI	ACTGG	2 cut(s)	169, 273
BseRI	GAGGAG	2 cut(s)	62, 151
BseXI	GCAGC	1 cut(s)	65
BshFI	GGCC	2 cut(s)	101, 176
BshNI	GGYRCC	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	87
BsnI	GGCC	2 cut(s)	101, 176
BspACI	CCGC	3 cut(s)	75, 90, 251
BspANI	GGCC	2 cut(s)	101, 176
BspLI	GGNNCC	1 cut(s)	73
BspQI	GCTCTTC	1 cut(s)	230
BspT107I	GGYRCC	1 cut(s)	71
BsrI	ACTGG	2 cut(s)	169, 273
BssECI	CCNNGG	1 cut(s)	7
BssNI	GRCGYC	2 cut(s)	216, 228
Bst4CI	ACNGT	3 cut(s)	8, 71, 123
Bst6I	CTCTTC	1 cut(s)	230
BstACI	GRCGYC	2 cut(s)	216, 228
BstDSI	CCRYGG	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	261
BstMAI	GTCTC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstNSI	RCATGY	1 cut(s)	43
BstV1I	GCAGC	1 cut(s)	65
BstV2I	GAAGAC	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	101, 176
BtgI	CCRYGG	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	261
BtsIMutI	CAGTG	2 cut(s)	176, 280
Cfr13I	GGNCC	2 cut(s)	4, 174
CseI	GACGC	1 cut(s)	205
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	5 cut(s)	56, 101, 176, 189, 282
CviKI_1	RGCY	5 cut(s)	56, 101, 176, 189, 282
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco32I	GATATC	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	4
EcoRV	GATATC	1 cut(s)	137
FaeI	CATG	1 cut(s)	43
FaiI	YATR	2 cut(s)	41, 66
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FatI	CATG	1 cut(s)	39
FauI	CCCGC	1 cut(s)	244
Fnu4HI	GCNGC	3 cut(s)	54, 75, 91
FokI	GGATG	1 cut(s)	268
Fsp4HI	GCNGC	3 cut(s)	54, 75, 91
FspBI	CTAG	1 cut(s)	194
GluI	GCNGC	3 cut(s)	54, 75, 91
GsuI	CTGGAG	1 cut(s)	169
HaeIII	GGCC	2 cut(s)	101, 176
HapII	CCGG	1 cut(s)	44
HgaI	GACGC	1 cut(s)	205
Hin1I	GRCGYC	2 cut(s)	216, 228
Hin1II	CATG	1 cut(s)	43
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188III	TCNNGA	2 cut(s)	115, 232
Hpy8I	GTNNAC	1 cut(s)	126
Hpy99I	CGWCG	2 cut(s)	230, 233
HpyAV	CCTTC	1 cut(s)	15
HpyCH4III	ACNGT	3 cut(s)	8, 71, 123
HpyCH4IV	ACGT	1 cut(s)	228
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpySE526I	ACGT	1 cut(s)	228
Hsp92I	GRCGYC	2 cut(s)	216, 228
Hsp92II	CATG	1 cut(s)	43
LguI	GCTCTTC	1 cut(s)	230
LpnPI	CCDG	5 cut(s)	57, 128, 142, 182, 199
Lsp1109I	GCAGC	1 cut(s)	65
MaeI	CTAG	1 cut(s)	194
MaeII	ACGT	1 cut(s)	228
MboII	GAAGA	3 cut(s)	24, 27, 247
MnlI	CCTC	6 cut(s)	40, 43, 125, 155, 172, 187
MseI	TTAA	1 cut(s)	153
MspI	CCGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	173
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	43
PciSI	GCTCTTC	1 cut(s)	230
PkrI	GCNGC	3 cut(s)	55, 76, 92
PspN4I	GGNNCC	1 cut(s)	73
PspPI	GGNCC	2 cut(s)	4, 174
SapI	GCTCTTC	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	3 cut(s)	54, 75, 91
Sau96I	GGNCC	2 cut(s)	4, 174
SetI	ASST	5 cut(s)	26, 58, 65, 153, 231
SinI	GGWCC	1 cut(s)	4
SsiI	CCGC	3 cut(s)	75, 90, 251
SspMI	CTAG	1 cut(s)	194
TaaI	ACNGT	3 cut(s)	8, 71, 123
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	36
TauI	GCSGC	2 cut(s)	77, 93
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	2 cut(s)	176, 280
TseI	GCWGC	1 cut(s)	53
TspRI	CASTG	2 cut(s)	176, 280
VpaK11BI	GGWCC	1 cut(s)	4
XceI	RCATGY	1 cut(s)	43
XspI	CTAG	1 cut(s)	194
ZraI	GACGTC	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.