Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004034

Physical Location & Seq

Genomic Coordinates Forward (+)

9951762 .. 9953105

Gene Structure 1344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G28360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCGTCAACGACGTGTGCAAGAGAGGTGCATTACAGAGGAGTCAGAAAGAGACCTTGGGGTCGCTACGCTGCTGAGATACGAGATCCTTGGAAGAAAACTAGGGTTTGGTTAGGCACTTTCGACACTCCCGAAGAAGCTGCTCTTGCTTACGACGGCGCTGCTCGTTTCCTCCGTGGTATCAAAGCCAAAACTAACTTCCCTTCTCCTCTCTCTCTCGACCTCAACCACCTCCCTTCCGCTCCCTCAGCCGCAACCGCCGCCGCAAATAACCAACCCCACCAACACCAACAGCTCTGGTTCGCTGCGCCTCCTCCTGTTCCTCCAAGCTCCGACCATCATCACCAACACCACCGCATTTTTCTCCGAACCGGTGTGCTAAACGACAAAACTTCAGATTACTCTTCTACAGAAGCGCCGCTTTACTTCACCTCCTCGCCTAACACAGCCACGTCATCGCCTGGTTATCAAGTGGTTGGGTTTCCGATGATGAATTCTTCTCCTTCCCCTGTTACGGTGAGACGTGGCTTAGCCATTGACCTCAACGAGCCTCCGCCGCTTTGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

189

Amino Acids

20.95

Weight (kDa)

9.56

Isoelectric Point (pI)

60.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	11 - 60	2.5e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12980 AT1G28360 AT1G28370 AT1G28370 AT5G44210
fragaria_vesca	FvH4_3g08790 FvH4_7g26410
malus_domestica	MD05G1311600.v1.1 MD10G1290900.v1.1
prunus_persica	Prupe.4G051200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0008971
rosa_laevigata	RLG00000031621
rosa_multiflora	Rmu_sc0001875.1_g000010 Rmu_sc0004677.1_g000023 Rmu_ssc0000183.1_g000016
rosa_roxburghii	Rroxscaffold_1G00067050 Rroxscaffold_1G00067680
rosa_rugosa	Rorug02G0224700
rosa_samantha	Rh2AG229600 Rh2CG100300 Rh2CG233700 Rh2DG237300 Rh3BG166700 Rh3DG166100 Rh4BG243800 Rh5AG069400 Rh5BG066200 Rh5CG077400 Rh5DG065400 Rh7AG201600
rosa_wichuraiana	Rw1G005600 Rw5G006480 Rw7G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	60
AccBSI	CCGCTC	1 cut(s)	242
AciI	CCGC	9 cut(s)	240, 252, 258, 261, 264, 355, 419, 554, 557
AclWI	GGATC	1 cut(s)	80
AcsI	RAATTY	1 cut(s)	493
AcuI	CTGAAG	1 cut(s)	378
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	514
AflIII	ACRYGT	1 cut(s)	14
AgeI	ACCGGT	1 cut(s)	371
AjiI	CACGTC	3 cut(s)	15, 453, 524
AjnI	CCWGG	1 cut(s)	460
AjuI	GAANNNNNNNTTGG	4 cut(s)	40, 72, 182, 214
AluBI	AGCT	3 cut(s)	140, 295, 330
AluI	AGCT	3 cut(s)	140, 295, 330
Alw26I	GTCTC	2 cut(s)	46, 514
AlwI	GGATC	1 cut(s)	80
ApeKI	GCWGC	4 cut(s)	71, 140, 161, 305
ApoI	RAATTY	1 cut(s)	493
AsiGI	ACCGGT	1 cut(s)	371
AspLEI	GCGC	3 cut(s)	161, 310, 418
AsuHPI	GGTGA	3 cut(s)	335, 421, 529
BbvCI	CCTCAGC	1 cut(s)	247
BbvI	GCAGC	4 cut(s)	58, 127, 148, 292
BccI	CCATC	1 cut(s)	345
BceAI	ACGGC	1 cut(s)	172
BcgI	CGANNNNNNTGC	4 cut(s)	122, 143, 156, 177
BciT130I	CCWGG	1 cut(s)	462
BcoDI	GTCTC	2 cut(s)	46, 514
BfaI	CTAG	1 cut(s)	102
BfmI	CTRYAG	1 cut(s)	408
BfoI	RGCGCY	2 cut(s)	162, 419
BglI	GCCNNNNNGGC	1 cut(s)	562
BisI	GCNGC	9 cut(s)	72, 141, 162, 252, 261, 264, 306, 419, 557
BlpI	GCTNAGC	1 cut(s)	529
BlsI	GCNGC	9 cut(s)	73, 142, 163, 253, 262, 265, 307, 420, 558
Bme1390I	CCNGG	1 cut(s)	462
BmgBI	CACGTC	3 cut(s)	15, 453, 524
BmrFI	CCNGG	1 cut(s)	462
Bpu10I	CCTNAGC	1 cut(s)	247
Bpu1102I	GCTNAGC	1 cut(s)	529
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	3 cut(s)	56, 89, 175
BsaWI	WCCGGW	1 cut(s)	371
BsaXI	ACNNNNNCTCC	2 cut(s)	416, 446
Bsc4I	CCNNNNNNNGG	1 cut(s)	514
Bse118I	RCCGGY	1 cut(s)	371
BseBI	CCWGG	1 cut(s)	462
BseDI	CCNNGG	3 cut(s)	56, 89, 175
BseLI	CCNNNNNNNGG	1 cut(s)	514
BseMII	CTCAG	2 cut(s)	66, 261
BseRI	GAGGAG	4 cut(s)	54, 198, 303, 424
BseXI	GCAGC	4 cut(s)	58, 127, 148, 292
BshTI	ACCGGT	1 cut(s)	371
BsiSI	CCGG	1 cut(s)	372
BslI	CCNNNNNNNGG	1 cut(s)	514
BsmAI	GTCTC	2 cut(s)	46, 514
BsmBI	CGTCTC	1 cut(s)	514
Bso31I	GGTCTC	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	85
Bsp1720I	GCTNAGC	1 cut(s)	529
BspACI	CCGC	9 cut(s)	240, 252, 258, 261, 264, 355, 419, 554, 557
BspCNI	CTCAG	2 cut(s)	67, 260
BspPI	GGATC	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	46
BsrBI	CCGCTC	1 cut(s)	242
BsrFI	RCCGGY	1 cut(s)	371
BssAI	RCCGGY	1 cut(s)	371
BssECI	CCNNGG	3 cut(s)	56, 89, 175
BssMI	GATC	1 cut(s)	85
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	56, 89
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	1 cut(s)	517
Bst6I	CTCTTC	1 cut(s)	409
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	3 cut(s)	75, 247, 529
BstDSI	CCRYGG	1 cut(s)	175
BstH2I	RGCGCY	2 cut(s)	162, 419
BstHHI	GCGC	3 cut(s)	161, 310, 418
BstKTI	GATC	1 cut(s)	88
BstMAI	GTCTC	2 cut(s)	46, 514
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	6 cut(s)	146, 248, 257, 260, 556, 562
BstNI	CCWGG	1 cut(s)	462
BstSCI	CCNGG	1 cut(s)	460
BstSFI	CTRYAG	1 cut(s)	408
BstV1I	GCAGC	4 cut(s)	58, 127, 148, 292
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BtgI	CCRYGG	1 cut(s)	175
BtgZI	GCGATG	1 cut(s)	441
BtrI	CACGTC	3 cut(s)	15, 453, 524
CfoI	GCGC	3 cut(s)	161, 310, 418
Cfr10I	RCCGGY	1 cut(s)	371
CspAI	ACCGGT	1 cut(s)	371
DdeI	CTNAG	3 cut(s)	75, 247, 529
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
DrdI	GACNNNNNNGTC	1 cut(s)	60
DseDI	GACNNNNNNGTC	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	409
EarI	CTCTTC	1 cut(s)	409
EciI	GGCGGA	1 cut(s)	543
Eco130I	CCWWGG	2 cut(s)	56, 89
Eco31I	GGTCTC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	378
EcoRI	GAATTC	1 cut(s)	493
EcoRII	CCWGG	1 cut(s)	460
EcoT14I	CCWWGG	2 cut(s)	56, 89
ErhI	CCWWGG	2 cut(s)	56, 89
Esp3I	CGTCTC	1 cut(s)	514
FalI	AAGNNNNNCTT	4 cut(s)	129, 161, 405, 437
Fnu4HI	GCNGC	9 cut(s)	72, 141, 162, 252, 261, 264, 306, 419, 557
Fsp4HI	GCNGC	9 cut(s)	72, 141, 162, 252, 261, 264, 306, 419, 557
FspBI	CTAG	1 cut(s)	102
GlaI	GCGC	3 cut(s)	160, 309, 417
GluI	GCNGC	9 cut(s)	72, 141, 162, 252, 261, 264, 306, 419, 557
HaeII	RGCGCY	2 cut(s)	162, 419
HapII	CCGG	1 cut(s)	372
HhaI	GCGC	3 cut(s)	161, 310, 418
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	3 cut(s)	159, 308, 416
HinP1I	GCGC	3 cut(s)	159, 308, 416
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	1 cut(s)	42
HpaII	CCGG	1 cut(s)	372
HphI	GGTGA	3 cut(s)	335, 421, 529
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	5 cut(s)	47, 334, 368, 397, 486
Hpy188III	TCNNGA	2 cut(s)	131, 218
Hpy8I	GTNNAC	1 cut(s)	9
Hpy99I	CGWCG	2 cut(s)	16, 158
HpyAV	CCTTC	3 cut(s)	213, 246, 513
HpyCH4III	ACNGT	1 cut(s)	517
HpyCH4IV	ACGT	3 cut(s)	14, 452, 523
HpyCH4V	TGCA	2 cut(s)	20, 31
HpyF10VI	GCNNNNNNNGC	6 cut(s)	146, 248, 257, 260, 556, 562
HpyF3I	CTNAG	3 cut(s)	75, 247, 529
HpySE526I	ACGT	3 cut(s)	14, 452, 523
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	3 cut(s)	159, 308, 416
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	2 cut(s)	247, 335
LpnPI	CCDG	6 cut(s)	283, 330, 385, 447, 474, 522
Lsp1109I	GCAGC	4 cut(s)	58, 127, 148, 292
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	3 cut(s)	14, 452, 523
MaeIII	GTNAC	1 cut(s)	511
MalI	GATC	1 cut(s)	87
MbiI	CCGCTC	1 cut(s)	242
MboI	GATC	1 cut(s)	85
MboII	GAAGA	4 cut(s)	106, 146, 396, 489
MflI	RGATCY	1 cut(s)	85
MluCI	AATT	1 cut(s)	493
MlyI	GAGTC	1 cut(s)	51
MmeI	TCCRAC	1 cut(s)	357
MspI	CCGG	1 cut(s)	372
MspR9I	CCNGG	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	462
MwoI	GCNNNNNNNGC	6 cut(s)	146, 248, 257, 260, 556, 562
NdeII	GATC	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 172
PinAI	ACCGGT	1 cut(s)	371
PkrI	GCNGC	9 cut(s)	73, 142, 163, 253, 262, 265, 307, 420, 558
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	460
PspGI	CCWGG	1 cut(s)	460
PsuI	RGATCY	1 cut(s)	85
SatI	GCNGC	9 cut(s)	72, 141, 162, 252, 261, 264, 306, 419, 557
Sau3AI	GATC	1 cut(s)	85
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	462
SfcI	CTRYAG	1 cut(s)	408
Sse9I	AATT	1 cut(s)	493
SsiI	CCGC	9 cut(s)	240, 252, 258, 261, 264, 355, 419, 554, 557
SspMI	CTAG	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	460
StyI	CCWWGG	2 cut(s)	56, 89
TaaI	ACNGT	1 cut(s)	517
TaiI	ACGT	3 cut(s)	17, 455, 526
TaqI	TCGA	2 cut(s)	123, 219
TasI	AATT	1 cut(s)	493
TauI	GCSGC	5 cut(s)	254, 263, 266, 421, 559
TseI	GCWGC	4 cut(s)	71, 140, 161, 305
TspDTI	ATGAA	1 cut(s)	506
TspGWI	ACGGA	1 cut(s)	164
XapI	RAATTY	1 cut(s)	493
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.