Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004034

Physical Location & Seq

Genomic Coordinates Forward (+)

17806397 .. 17807541

Gene Structure 1145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G44210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCTCCAAGACAGGCGAACGGTAGAAGCATTGCCGTGAGTGAAGGCGGCGGAGGGAAGACGATGACGATGACGACGATGCGGAAGGAAGTGCACTTTAGAGGTGTGAGGAAGCGTCCATGGGGTAGATACGCGGCGGAGATCCGTGACCCGGGAAAGAAAACCCGGGTTTGGCTCGGGACATTCGACACGGCGGAGGAAGCTGCAAGAGCTTACGACACCGCCGCTAGAGAGTTTCGTGGCTCCAAAGCAAAGACTAATTTCCCTCTTCCCGGAGAGTCTACTACGGTTAACGACGGTGGCGAGAACGATTCTTACGTCAACCGTACGACGGTGACGACGGCGCGTGAGATGACGCGTCAGAGATTTCCGTTTGCATGTCACCGGGAGCGTAAAGTCGTCGGTGGTTATGCTTCTGCTGGTTTTTTCTTCGATCCGTCAAGAGCTGCTTCGTTAAGAGCAGAGCTTTCTCGGGTTTGTCCGGTTCGGTTTGATCCGGTTAATATCGAGTTGAGTATTGGTATTCGAGAAACCGTAAAAGTTGAACCGAGAAGAGAACTAAACCTGGATCTTAACCTAGCTCCACCGGTGGTGGACGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0016020 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

200

Amino Acids

22.27

Weight (kDa)

10.05

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	32 - 81	2.6e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12980 AT1G28360 AT1G28370 AT1G28370 AT5G44210
fragaria_vesca	FvH4_3g08790 FvH4_7g26410
malus_domestica	MD05G1311600.v1.1 MD10G1290900.v1.1
prunus_persica	Prupe.4G051200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0008971
rosa_laevigata	RLG00000031621
rosa_multiflora	Rmu_sc0001875.1_g000010 Rmu_sc0004677.1_g000023 Rmu_ssc0000183.1_g000016
rosa_roxburghii	Rroxscaffold_1G00067050 Rroxscaffold_1G00067680
rosa_rugosa	Rorug02G0224700
rosa_samantha	Rh2AG229600 Rh2CG100300 Rh2CG233700 Rh2DG237300 Rh3BG166700 Rh3DG166100 Rh4BG243800 Rh5AG069400 Rh5BG066200 Rh5CG077400 Rh5DG065400 Rh7AG201600
rosa_wichuraiana	Rw1G005600 Rw5G006480 Rw7G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	281
AccII	CGCG	3 cut(s)	134, 346, 358
AciI	CCGC	8 cut(s)	48, 51, 82, 134, 137, 194, 222, 225
AclWI	GGATC	4 cut(s)	136, 428, 488, 576
AfaI	GTAC	1 cut(s)	328
AfiI	CCNNNNNNNGG	4 cut(s)	151, 171, 272, 331
AflIII	ACRYGT	1 cut(s)	356
AgeI	ACCGGT	1 cut(s)	586
AgsI	TTSAA	1 cut(s)	545
AjnI	CCWGG	1 cut(s)	564
AluBI	AGCT	5 cut(s)	203, 212, 446, 466, 581
AluI	AGCT	5 cut(s)	203, 212, 446, 466, 581
Alw21I	GWGCWC	1 cut(s)	96
Alw44I	GTGCAC	1 cut(s)	92
AlwI	GGATC	4 cut(s)	136, 428, 488, 576
Ama87I	CYCGRG	4 cut(s)	151, 165, 176, 471
ApaLI	GTGCAC	1 cut(s)	92
ApeKI	GCWGC	2 cut(s)	203, 446
AsiGI	ACCGGT	1 cut(s)	586
AspLEI	GCGC	1 cut(s)	346
AsuC2I	CCSGG	6 cut(s)	152, 153, 166, 167, 273, 386
AsuHPI	GGTGA	2 cut(s)	346, 374
AvaI	CYCGRG	4 cut(s)	151, 165, 176, 471
BaeGI	GKGCMC	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	190, 433
BceAI	ACGGC	3 cut(s)	20, 207, 357
BciT130I	CCWGG	1 cut(s)	566
BcnI	CCSGG	6 cut(s)	152, 153, 166, 167, 273, 386
BfaI	CTAG	2 cut(s)	228, 578
BisI	GCNGC	5 cut(s)	49, 135, 204, 225, 447
BlsI	GCNGC	5 cut(s)	50, 136, 205, 226, 448
Bme1390I	CCNGG	7 cut(s)	152, 153, 166, 167, 273, 386, 566
BmeT110I	CYCGRG	4 cut(s)	151, 165, 176, 471
BmiI	GGNNCC	2 cut(s)	6, 244
BmrFI	CCNGG	7 cut(s)	152, 153, 166, 167, 273, 386, 566
BmsI	GCATC	1 cut(s)	69
BpiI	GAAGAC	1 cut(s)	65
BpuMI	CCSGG	6 cut(s)	152, 153, 166, 167, 273, 386
BsaJI	CCNNGG	3 cut(s)	119, 151, 165
BsaWI	WCCGGW	3 cut(s)	481, 496, 586
Bsc4I	CCNNNNNNNGG	4 cut(s)	151, 171, 272, 331
Bse118I	RCCGGY	1 cut(s)	586
Bse3DI	GCAATG	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	566
BseDI	CCNNGG	3 cut(s)	119, 151, 165
BseLI	CCNNNNNNNGG	4 cut(s)	151, 171, 272, 331
BseMI	GCAATG	1 cut(s)	30
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	2 cut(s)	190, 433
Bsh1236I	CGCG	3 cut(s)	134, 346, 358
BshTI	ACCGGT	1 cut(s)	586
BsiHKAI	GWGCWC	1 cut(s)	96
BsiHKCI	CYCGRG	4 cut(s)	151, 165, 176, 471
BsiSI	CCGG	7 cut(s)	152, 166, 273, 385, 482, 497, 587
BsiWI	CGTACG	1 cut(s)	326
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	4 cut(s)	151, 171, 272, 331
BsmFI	GGGAC	1 cut(s)	193
BsoBI	CYCGRG	4 cut(s)	151, 165, 176, 471
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	4 cut(s)	141, 433, 493, 568
Bsp19I	CCATGG	1 cut(s)	119
BspACI	CCGC	8 cut(s)	48, 51, 82, 134, 137, 194, 222, 225
BspFNI	CGCG	3 cut(s)	134, 346, 358
BspLI	GGNNCC	2 cut(s)	6, 244
BspPI	GGATC	4 cut(s)	136, 428, 488, 576
BsrDI	GCAATG	1 cut(s)	30
BsrFI	RCCGGY	1 cut(s)	586
BssAI	RCCGGY	1 cut(s)	586
BssECI	CCNNGG	3 cut(s)	119, 151, 165
BssMI	GATC	4 cut(s)	141, 433, 493, 568
BssT1I	CCWWGG	1 cut(s)	119
Bst2UI	CCWGG	1 cut(s)	566
Bst4CI	ACNGT	6 cut(s)	23, 289, 299, 326, 334, 535
Bst6I	CTCTTC	2 cut(s)	273, 547
BstDSI	CCRYGG	1 cut(s)	119
BstFNI	CGCG	3 cut(s)	134, 346, 358
BstHHI	GCGC	1 cut(s)	346
BstKTI	GATC	4 cut(s)	144, 436, 496, 571
BstMBI	GATC	4 cut(s)	141, 433, 493, 568
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 209
BstNI	CCWGG	1 cut(s)	566
BstNSI	RCATGY	1 cut(s)	381
BstSCI	CCNGG	7 cut(s)	150, 151, 164, 165, 271, 384, 564
BstSLI	GKGCMC	1 cut(s)	96
BstUI	CGCG	3 cut(s)	134, 346, 358
BstV1I	GCAGC	2 cut(s)	190, 433
BstV2I	GAAGAC	1 cut(s)	65
BstX2I	RGATCY	2 cut(s)	141, 568
BstYI	RGATCY	2 cut(s)	141, 568
BtgI	CCRYGG	1 cut(s)	119
CfoI	GCGC	1 cut(s)	346
Cfr10I	RCCGGY	1 cut(s)	586
Cfr9I	CCCGGG	2 cut(s)	151, 165
CseI	GACGC	3 cut(s)	104, 347, 364
Csp6I	GTAC	1 cut(s)	327
CspAI	ACCGGT	1 cut(s)	586
CviAII	CATG	2 cut(s)	120, 378
CviJI	RGCY	8 cut(s)	5, 175, 203, 212, 243, 446, 466, 581
CviKI_1	RGCY	8 cut(s)	5, 175, 203, 212, 243, 446, 466, 581
CviQI	GTAC	1 cut(s)	327
DpnI	GATC	4 cut(s)	143, 435, 495, 570
DpnII	GATC	4 cut(s)	141, 433, 493, 568
Eam1104I	CTCTTC	2 cut(s)	273, 547
EarI	CTCTTC	2 cut(s)	273, 547
EciI	GGCGGA	3 cut(s)	66, 152, 209
Eco130I	CCWWGG	1 cut(s)	119
Eco88I	CYCGRG	4 cut(s)	151, 165, 176, 471
EcoRII	CCWGG	1 cut(s)	564
EcoT14I	CCWWGG	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	119
FaeI	CATG	2 cut(s)	123, 381
FaiI	YATR	3 cut(s)	121, 379, 411
FalI	AAGNNNNNCTT	2 cut(s)	433, 465
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	2 cut(s)	119, 377
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	5 cut(s)	49, 135, 204, 225, 447
Fsp4HI	GCNGC	5 cut(s)	49, 135, 204, 225, 447
FspBI	CTAG	2 cut(s)	228, 578
GlaI	GCGC	1 cut(s)	345
GluI	GCNGC	5 cut(s)	49, 135, 204, 225, 447
HapII	CCGG	7 cut(s)	152, 166, 273, 385, 482, 497, 587
HgaI	GACGC	3 cut(s)	104, 347, 364
HhaI	GCGC	1 cut(s)	346
Hin1II	CATG	2 cut(s)	123, 381
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HincII	GTYRAC	2 cut(s)	292, 322
HindII	GTYRAC	2 cut(s)	292, 322
HinfI	GANTC	2 cut(s)	278, 311
HpaI	GTTAAC	1 cut(s)	292
HpaII	CCGG	7 cut(s)	152, 166, 273, 385, 482, 497, 587
HphI	GGTGA	2 cut(s)	346, 374
Hpy166II	GTNNAC	5 cut(s)	94, 282, 292, 322, 595
Hpy188I	TCNGA	1 cut(s)	363
Hpy188III	TCNNGA	3 cut(s)	178, 441, 527
Hpy8I	GTNNAC	5 cut(s)	94, 282, 292, 322, 595
Hpy99I	CGWCG	5 cut(s)	79, 299, 334, 343, 404
HpyAV	CCTTC	2 cut(s)	38, 79
HpyCH4III	ACNGT	6 cut(s)	23, 289, 299, 326, 334, 535
HpyCH4IV	ACGT	2 cut(s)	318, 597
HpyCH4V	TGCA	3 cut(s)	94, 206, 377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 209
HpySE526I	ACGT	2 cut(s)	318, 597
Hsp92II	CATG	2 cut(s)	123, 381
HspAI	GCGC	1 cut(s)	344
KspAI	GTTAAC	1 cut(s)	292
Kzo9I	GATC	4 cut(s)	141, 433, 493, 568
LmnI	GCTCC	4 cut(s)	10, 248, 388, 586
LpnPI	CCDG	9 cut(s)	165, 179, 286, 398, 405, 495, 510, 551, 578
Lsp1109I	GCAGC	2 cut(s)	190, 433
LweI	GCATC	1 cut(s)	69
MaeI	CTAG	2 cut(s)	228, 578
MaeII	ACGT	2 cut(s)	318, 597
MaeIII	GTNAC	3 cut(s)	146, 334, 380
MalI	GATC	4 cut(s)	143, 435, 495, 570
MboI	GATC	4 cut(s)	141, 433, 493, 568
MboII	GAAGA	4 cut(s)	70, 260, 421, 564
MflI	RGATCY	2 cut(s)	141, 568
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	1 cut(s)	259
MluI	ACGCGT	1 cut(s)	356
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	5 cut(s)	47, 95, 102, 190, 276
MseI	TTAA	4 cut(s)	291, 455, 501, 573
MslI	CAYNNNNRTG	1 cut(s)	35
MspI	CCGG	7 cut(s)	152, 166, 273, 385, 482, 497, 587
MspR9I	CCNGG	7 cut(s)	152, 153, 166, 167, 273, 386, 566
MvaI	CCWGG	1 cut(s)	566
MvnI	CGCG	3 cut(s)	134, 346, 358
MwoI	GCNNNNNNNGC	2 cut(s)	200, 209
NciI	CCSGG	6 cut(s)	152, 153, 166, 167, 273, 386
NcoI	CCATGG	1 cut(s)	119
NdeII	GATC	4 cut(s)	141, 433, 493, 568
NlaIII	CATG	2 cut(s)	123, 381
NlaIV	GGNNCC	2 cut(s)	6, 244
NmuCI	GTSAC	3 cut(s)	146, 334, 380
NspI	RCATGY	1 cut(s)	381
PcsI	WCGNNNNNNNCGW	5 cut(s)	74, 183, 300, 315, 335
PfeI	GAWTC	1 cut(s)	311
Pfl23II	CGTACG	1 cut(s)	326
PfoI	TCCNGGA	1 cut(s)	271
PinAI	ACCGGT	1 cut(s)	586
PkrI	GCNGC	5 cut(s)	50, 136, 205, 226, 448
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	564
PspGI	CCWGG	1 cut(s)	564
PspLI	CGTACG	1 cut(s)	326
PspN4I	GGNNCC	2 cut(s)	6, 244
PsrI	GAACNNNNNNTAC	2 cut(s)	299, 331
PsuI	RGATCY	2 cut(s)	141, 568
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	4 cut(s)	291, 455, 501, 573
SatI	GCNGC	5 cut(s)	49, 135, 204, 225, 447
Sau3AI	GATC	4 cut(s)	141, 433, 493, 568
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	7 cut(s)	152, 153, 166, 167, 273, 386, 566
SduI	GDGCHC	1 cut(s)	96
SfaNI	GCATC	1 cut(s)	69
SgrAI	CRCCGGYG	1 cut(s)	586
SmaI	CCCGGG	2 cut(s)	153, 167
SmiMI	CAYNNNNRTG	1 cut(s)	35
Sse9I	AATT	1 cut(s)	259
SsiI	CCGC	8 cut(s)	48, 51, 82, 134, 137, 194, 222, 225
SspMI	CTAG	2 cut(s)	228, 578
StyD4I	CCNGG	7 cut(s)	150, 151, 164, 165, 271, 384, 564
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	6 cut(s)	23, 289, 299, 326, 334, 535
TaiI	ACGT	2 cut(s)	321, 600
TaqI	TCGA	4 cut(s)	186, 432, 507, 526
TasI	AATT	1 cut(s)	259
TauI	GCSGC	3 cut(s)	51, 137, 227
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	4 cut(s)	291, 455, 501, 573
Tru9I	TTAA	4 cut(s)	291, 455, 501, 573
TseFI	GTSAC	3 cut(s)	146, 334, 380
TseI	GCWGC	2 cut(s)	203, 446
Tsp45I	GTSAC	3 cut(s)	146, 334, 380
TspGWI	ACGGA	3 cut(s)	134, 360, 426
TspMI	CCCGGG	2 cut(s)	151, 165
VneI	GTGCAC	1 cut(s)	92
XceI	RCATGY	1 cut(s)	381
XmaI	CCCGGG	2 cut(s)	151, 165
XmiI	GTMKAC	1 cut(s)	281
XspI	CTAG	2 cut(s)	228, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.