Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004034

Physical Location & Seq

Genomic Coordinates Forward (+)

23756035 .. 23756319

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG237300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGCCGGAGGAGGCAGCTCTCACCTATGACGGGGCCGCAAGGTCTCTCTGCGGCAACAAGGCCAAGACCAACTTCCTGACTCCGTTGACTAGAGGATATCTCTCCCTTGACCTTAACATCTCCTCCGCCGAGTGGGCCTCCCACTGCGGCCCTCTAGTTGAGTTTCTCCACACCGGCGTCCTAAACGACGTCGTGAAGAGCAAGGAGGTGGCGGGGACGTCATTTATTGTGTCTGAACCCGCTTGGATCTTGAATTGTTCAAATCTAACACTCTGTGGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

94

Amino Acids

9.99

Weight (kDa)

5.14

Isoelectric Point (pI)

31.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12980 AT1G28360 AT1G28370 AT1G28370 AT5G44210
fragaria_vesca	FvH4_3g08790 FvH4_7g26410
malus_domestica	MD05G1311600.v1.1 MD10G1290900.v1.1
prunus_persica	Prupe.4G051200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0008971
rosa_laevigata	RLG00000031621
rosa_multiflora	Rmu_sc0001875.1_g000010 Rmu_sc0004677.1_g000023 Rmu_ssc0000183.1_g000016
rosa_roxburghii	Rroxscaffold_1G00067050 Rroxscaffold_1G00067680
rosa_rugosa	Rorug02G0224700
rosa_samantha	Rh2AG229600 Rh2CG100300 Rh2CG233700 Rh2DG237300 Rh3BG166700 Rh3DG166100 Rh4BG243800 Rh5AG069400 Rh5BG066200 Rh5CG077400 Rh5DG065400 Rh7AG201600
rosa_wichuraiana	Rw1G005600 Rw5G006480 Rw7G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	192, 221
AciI	CCGC	6 cut(s)	36, 51, 126, 147, 212, 240
AclWI	GGATC	1 cut(s)	254
AcyI	GRCGYC	3 cut(s)	177, 189, 218
AdeI	CACNNNGTG	1 cut(s)	275
AfiI	CCNNNNNNNGG	2 cut(s)	30, 132
AgsI	TTSAA	2 cut(s)	253, 261
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	48
AlwI	GGATC	1 cut(s)	254
AoxI	GGCC	4 cut(s)	33, 60, 135, 148
ApeKI	GCWGC	1 cut(s)	14
AspS9I	GGNCC	3 cut(s)	33, 135, 149
AsuHPI	GGTGA	1 cut(s)	13
BbvI	GCAGC	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	2 cut(s)	90, 155
BglI	GCCNNNNNGGC	1 cut(s)	134
BisI	GCNGC	4 cut(s)	15, 36, 52, 148
BlsI	GCNGC	4 cut(s)	16, 37, 53, 149
BmgT120I	GGNCC	3 cut(s)	33, 135, 149
BmiI	GGNNCC	1 cut(s)	34
BplI	GAGNNNNNCTC	4 cut(s)	84, 116, 122, 154
BsaHI	GRCGYC	3 cut(s)	177, 189, 218
BsaI	GGTCTC	1 cut(s)	48
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 132
Bse118I	RCCGGY	1 cut(s)	173
BseLI	CCNNNNNNNGG	2 cut(s)	30, 132
BseRI	GAGGAG	2 cut(s)	23, 112
BseXI	GCAGC	1 cut(s)	26
BshFI	GGCC	4 cut(s)	35, 62, 137, 150
BsiSI	CCGG	2 cut(s)	5, 174
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	2 cut(s)	30, 132
BsmAI	GTCTC	1 cut(s)	48
BsmFI	GGGAC	1 cut(s)	229
BsnI	GGCC	4 cut(s)	35, 62, 137, 150
Bso31I	GGTCTC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	246
BspACI	CCGC	6 cut(s)	36, 51, 126, 147, 212, 240
BspANI	GGCC	4 cut(s)	35, 62, 137, 150
BspLI	GGNNCC	1 cut(s)	34
BspPI	GGATC	1 cut(s)	254
BspQI	GCTCTTC	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	173
BssAI	RCCGGY	1 cut(s)	173
BssMI	GATC	1 cut(s)	246
BssNI	GRCGYC	3 cut(s)	177, 189, 218
Bst6I	CTCTTC	1 cut(s)	191
BstACI	GRCGYC	3 cut(s)	177, 189, 218
BstKTI	GATC	1 cut(s)	249
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	26
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BsuRI	GGCC	4 cut(s)	35, 62, 137, 150
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	142
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	3 cut(s)	33, 135, 149
CseI	GACGC	1 cut(s)	166
CviJI	RGCY	5 cut(s)	17, 35, 62, 137, 150
CviKI_1	RGCY	5 cut(s)	17, 35, 62, 137, 150
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
DraIII	CACNNNGTG	1 cut(s)	275
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
EciI	GGCGGA	1 cut(s)	115
Eco31I	GGTCTC	1 cut(s)	48
Eco32I	GATATC	1 cut(s)	98
EcoRV	GATATC	1 cut(s)	98
FaiI	YATR	1 cut(s)	27
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FaqI	GGGAC	1 cut(s)	229
FauI	CCCGC	2 cut(s)	205, 247
Fnu4HI	GCNGC	4 cut(s)	15, 36, 52, 148
Fsp4HI	GCNGC	4 cut(s)	15, 36, 52, 148
FspBI	CTAG	2 cut(s)	90, 155
GluI	GCNGC	4 cut(s)	15, 36, 52, 148
HaeIII	GGCC	4 cut(s)	35, 62, 137, 150
HapII	CCGG	2 cut(s)	5, 174
HgaI	GACGC	1 cut(s)	166
Hin1I	GRCGYC	3 cut(s)	177, 189, 218
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HinfI	GANTC	1 cut(s)	79
HpaII	CCGG	2 cut(s)	5, 174
HphI	GGTGA	1 cut(s)	13
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	3 cut(s)	76, 193, 250
Hpy8I	GTNNAC	1 cut(s)	87
Hpy99I	CGWCG	2 cut(s)	191, 194
HpyCH4IV	ACGT	2 cut(s)	189, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpySE526I	ACGT	2 cut(s)	189, 218
Hsp92I	GRCGYC	3 cut(s)	177, 189, 218
Kzo9I	GATC	1 cut(s)	246
LguI	GCTCTTC	1 cut(s)	191
LpnPI	CCDG	3 cut(s)	18, 89, 187
Lsp1109I	GCAGC	1 cut(s)	26
MaeI	CTAG	2 cut(s)	90, 155
MaeII	ACGT	2 cut(s)	189, 218
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MboII	GAAGA	1 cut(s)	208
MflI	RGATCY	1 cut(s)	246
MluCI	AATT	1 cut(s)	253
MlyI	GAGTC	1 cut(s)	73
MnlI	CCTC	6 cut(s)	4, 86, 133, 148, 162, 199
MseI	TTAA	2 cut(s)	114, 283
MspI	CCGG	2 cut(s)	5, 174
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	1 cut(s)	246
NlaIV	GGNNCC	1 cut(s)	34
NmeAIII	GCCGAG	1 cut(s)	154
PciSI	GCTCTTC	1 cut(s)	191
PkrI	GCNGC	4 cut(s)	16, 37, 53, 149
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	34
PspPI	GGNCC	3 cut(s)	33, 135, 149
PsuI	RGATCY	1 cut(s)	246
SapI	GCTCTTC	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	114, 283
SatI	GCNGC	4 cut(s)	15, 36, 52, 148
Sau3AI	GATC	1 cut(s)	246
Sau96I	GGNCC	3 cut(s)	33, 135, 149
SchI	GAGTC	1 cut(s)	73
SetI	ASST	7 cut(s)	19, 26, 44, 114, 192, 210, 221
SgrAI	CRCCGGYG	1 cut(s)	173
Sse9I	AATT	1 cut(s)	253
SsiI	CCGC	6 cut(s)	36, 51, 126, 147, 212, 240
SspMI	CTAG	2 cut(s)	90, 155
TaiI	ACGT	2 cut(s)	192, 221
TasI	AATT	1 cut(s)	253
TauI	GCSGC	3 cut(s)	38, 54, 150
Tru1I	TTAA	2 cut(s)	114, 283
Tru9I	TTAA	2 cut(s)	114, 283
TscAI	CASTG	1 cut(s)	149
TseI	GCWGC	1 cut(s)	14
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	1 cut(s)	149
XspI	CTAG	2 cut(s)	90, 155
ZraI	GACGTC	2 cut(s)	190, 219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.