AT1G13970

Protein of unknown function (DUF1336)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002719
Physical Location & Seq
Reverse (-)
4779351 .. 4782546
3196 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13970.1

Sequence Viewer

Length: 1515 bp
ATGGGTGGCTGTGTTTCTTCTCAGAGAAAACTCAGTAACAAGCTTCAACAGAAGAAGCAGAAACGCGGCAGATCTGGCAAATGTCGGTCCAAAATATCGGCTTCTATGCCCGATGTTCCTATGAAACGCATGAGTAATGCGAGTGTTAGGGATTTTGCGGTGAGCGAATATGTTCATCTTGATTTCGACAATTGTGCAGCCAAGATGATGTGTAAGAGAGCTGAGATGTCTAATGCTAACTTCCATTTAACTCAGCTTCAATGGAACTGCAGCCAAATCGATGGAAACCGAATTTCACATGAGGAGGCTTGGTATGATTCCTTTAGCTACATCGATTCTGATTCTGATGATGGTTCAAATAGTAGTGTCTTCGAAGATGCAAATGCTTCTGCAATGGGACAAGTGATTCAGTATGAAGAATTCTACGAAAGTTACCTGAAAATAGATGGAAACAAAGGTGAGACTTACTCGAGCAAGAATGAGGTTAGTATAAAGAGAAACCAAGTGGCTGATGAATCTCACCATGAAACCTTCAAGACTACTACTTGTGAAGATCATCAAGATCACAGAAAGAAATCATCAAAAGTTGTTATGGTTTCTGTGAGAAGAACATCTATTGATAGCAAATCAACACCATCTGAATTCTCTTCAGCTGAGAAGCTCTTGTACCGTCCAAAAGCCGGTTCTATGATTCAACGTTCTTTAGGAGAGAAGATGACCAGTCAAGGAAGTTGGTCAGAAGTTTCTCCGTCGAGTTTCAAGCTCCGTGGATTGAATTTCTTCAGAGACAAGCAAAAGTGTCCTGCACCAAATTGTAGTCCTTACATACCAATTGGAGTCGACCTTTTTGCATGTCCTAAAAAGATCAACCACATTGCTCAACACATTGAGCTTCCTAATTTGAAACCGGCATCATCACAAGTCTGCGATATCCCCAATCTTTTGATAGTGAACATCCAGCTTCCAATGTATCCAACCTCTATGTTTGGTGACTATGATGGTGAAGGACTTAGCTTAGTATTGTACTTCAAACGCAATGAGAACTATCACAAAGAAATCTCATCTCACTTTAAAGAAACCATCAAGAGATTCATGGAAGATGAAATGGAGAAAGTAAAAGGATTCACAAGAGAATCAACAGTTCCATTCAGAGAGAGGTTAAAGATCATGGCAGGTTTGGTAAATCCTGAGGATTTCCAGCTAAGTTCTACTGAGAGAAAACTTATCACAGCTTACAACGATAGACCGGTTCTTTCTCGTCCGCAACACGATTTCTTTCAGGGACCAAACTACTTTGAGATAGATTTGGATATACACAGATTCAGTTACATTTCGAGGAAAGGACTCGAATCTTTCAGGGATCGTATCAAGAACGGGATTCTTGATTTGGGATTAACAATTCAGGCTCAATCACCAGAGGAACTTCCAGAGCAAGTACTGTGTTGTGTCAGGCTGAACAAGATTGATTTCGTGAATCACGGACAAATTCCAACGCTTTTAACTAACAAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1336

Protein Analysis

504

Amino Acids

57.59

Weight (kDa)

8.44

Isoelectric Point (pI)

50.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR2_C PF07059 245 - 489 7.8e-62 Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1163
AccI GTMKAC 1 cut(s) 840
AccII CGCG 1 cut(s) 66
AciI CCGC 3 cut(s) 66, 158, 1262
AclI AACGTT 1 cut(s) 697
AclWI GGATC 1 cut(s) 1368
AcsI RAATTY 5 cut(s) 291, 419, 641, 775, 1485
AcuI CTGAAG 2 cut(s) 633, 766
AfaI GTAC 3 cut(s) 668, 1025, 1437
AfiI CCNNNNNNNGG 1 cut(s) 680
AgeI ACCGGT 1 cut(s) 1246
AgsI TTSAA 9 cut(s) 47, 260, 357, 535, 695, 760, 775, 904, 1030
AjuI GAANNNNNNNTTGG 2 cut(s) 667, 699
Alw26I GTCTC 2 cut(s) 455, 780
AlwI GGATC 1 cut(s) 1368
Ama87I CYCGRG 1 cut(s) 469
ApeKI GCWGC 2 cut(s) 197, 270
ApoI RAATTY 5 cut(s) 291, 419, 641, 775, 1485
AsiGI ACCGGT 1 cut(s) 1246
Asp700I GAANNNNTTC 2 cut(s) 171, 779
AspS9I GGNCC 2 cut(s) 87, 1283
AsuHPI GGTGA 6 cut(s) 172, 470, 512, 1001, 1013, 1404
AsuII TTCGAA 1 cut(s) 372
AvaI CYCGRG 1 cut(s) 469
AvaII GGWCC 2 cut(s) 87, 1283
AxyI CCTNAGG 1 cut(s) 1188
BarI GAAGNNNNNNTAC 2 cut(s) 650, 682
BbsI GAAGAC 1 cut(s) 361
BbvI GCAGC 2 cut(s) 209, 282
BccI CCATC 6 cut(s) 275, 344, 440, 643, 992, 1088
BcgI CGANNNNNNTGC 6 cut(s) 176, 210, 259, 293, 830, 864
BciVI GTATCC 1 cut(s) 981
BcoDI GTCTC 2 cut(s) 455, 780
BfmI CTRYAG 1 cut(s) 268
BfuAI ACCTGC 1 cut(s) 1163
BfuI GTATCC 1 cut(s) 981
BglII AGATCT 1 cut(s) 71
BisI GCNGC 3 cut(s) 67, 198, 271
BlsI GCNGC 3 cut(s) 68, 199, 272
BmcAI AGTACT 1 cut(s) 1437
Bme18I GGWCC 2 cut(s) 87, 1283
BmeT110I CYCGRG 1 cut(s) 469
BmgT120I GGNCC 2 cut(s) 87, 1283
BmiI GGNNCC 1 cut(s) 1284
BmsI GCATC 2 cut(s) 367, 920
BpiI GAAGAC 1 cut(s) 361
BplI GAGNNNNNCTC 2 cut(s) 452, 484
Bpu14I TTCGAA 1 cut(s) 372
Bsa29I ATCGAT 2 cut(s) 279, 333
BsaJI CCNNGG 1 cut(s) 766
BsaWI WCCGGW 1 cut(s) 1246
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 1 cut(s) 680
Bse118I RCCGGY 3 cut(s) 680, 907, 1246
Bse1I ACTGG 1 cut(s) 720
Bse21I CCTNAGG 1 cut(s) 1188
Bse3DI GCAATG 3 cut(s) 399, 873, 1042
BseCI ATCGAT 2 cut(s) 279, 333
BseDI CCNNGG 1 cut(s) 766
BseGI GGATG 1 cut(s) 954
BseLI CCNNNNNNNGG 1 cut(s) 680
BseMI GCAATG 3 cut(s) 399, 873, 1042
BseMII CTCAG 7 cut(s) 35, 46, 213, 266, 645, 1179, 1203
BseNI ACTGG 1 cut(s) 720
BseRI GAGGAG 1 cut(s) 317
BseXI GCAGC 2 cut(s) 209, 282
BsgI GTGCAG 2 cut(s) 216, 789
Bsh1236I CGCG 1 cut(s) 66
BshTI ACCGGT 1 cut(s) 1246
BshVI ATCGAT 2 cut(s) 279, 333
BsiHKCI CYCGRG 1 cut(s) 469
BsiSI CCGG 3 cut(s) 681, 908, 1247
BslFI GGGAC 2 cut(s) 411, 1296
BslI CCNNNNNNNGG 1 cut(s) 680
BsmAI GTCTC 2 cut(s) 455, 780
BsmFI GGGAC 2 cut(s) 411, 1296
BsoBI CYCGRG 1 cut(s) 469
Bsp119I TTCGAA 1 cut(s) 372
Bsp143I GATC 6 cut(s) 71, 553, 562, 864, 1164, 1360
BspACI CCGC 3 cut(s) 66, 158, 1262
BspCNI CTCAG 7 cut(s) 34, 45, 214, 265, 646, 1180, 1204
BspDI ATCGAT 2 cut(s) 279, 333
BspFNI CGCG 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 1284
BspMAI CTGCAG 1 cut(s) 272
BspMI ACCTGC 1 cut(s) 1163
BspPI GGATC 1 cut(s) 1368
BspT104I TTCGAA 1 cut(s) 372
BsrDI GCAATG 3 cut(s) 399, 873, 1042
BsrFI RCCGGY 3 cut(s) 680, 907, 1246
BsrI ACTGG 1 cut(s) 720
BssAI RCCGGY 3 cut(s) 680, 907, 1246
BssECI CCNNGG 1 cut(s) 766
BssMI GATC 6 cut(s) 71, 553, 562, 864, 1164, 1360
Bst4CI ACNGT 3 cut(s) 671, 1141, 1440
Bst6I CTCTTC 1 cut(s) 652
BstBI TTCGAA 1 cut(s) 372
BstDSI CCRYGG 1 cut(s) 766
BstF5I GGATG 1 cut(s) 954
BstFNI CGCG 1 cut(s) 66
BstKTI GATC 6 cut(s) 74, 556, 565, 867, 1167, 1363
BstMAI GTCTC 2 cut(s) 455, 780
BstMBI GATC 6 cut(s) 71, 553, 562, 864, 1164, 1360
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstNSI RCATGY 1 cut(s) 855
BstSFI CTRYAG 1 cut(s) 268
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 2 cut(s) 209, 282
BstV2I GAAGAC 1 cut(s) 361
BstX2I RGATCY 1 cut(s) 71
BstXI CCANNNNNNTGG 1 cut(s) 281
BstYI RGATCY 1 cut(s) 71
Bsu15I ATCGAT 2 cut(s) 279, 333
Bsu36I CCTNAGG 1 cut(s) 1188
BsuI GTATCC 1 cut(s) 981
BsuTUI ATCGAT 2 cut(s) 279, 333
BtgI CCRYGG 1 cut(s) 766
BtsCI GGATG 1 cut(s) 954
BveI ACCTGC 1 cut(s) 1163
Cfr10I RCCGGY 3 cut(s) 680, 907, 1246
Cfr13I GGNCC 2 cut(s) 87, 1283
ClaI ATCGAT 2 cut(s) 279, 333
Csp6I GTAC 3 cut(s) 667, 1024, 1436
CspAI ACCGGT 1 cut(s) 1246
CspCI CAANNNNNGTGG 2 cut(s) 748, 783
CviAII CATG 6 cut(s) 130, 299, 524, 852, 1093, 1168
CviQI GTAC 3 cut(s) 667, 1024, 1436
DpnI GATC 6 cut(s) 73, 555, 564, 866, 1166, 1362
DpnII GATC 6 cut(s) 71, 553, 562, 864, 1164, 1360
DraI TTTAAA 1 cut(s) 1072
Eam1104I CTCTTC 1 cut(s) 652
EarI CTCTTC 1 cut(s) 652
Eco32I GATATC 1 cut(s) 931
Eco47I GGWCC 2 cut(s) 87, 1283
Eco57I CTGAAG 2 cut(s) 633, 766
Eco81I CCTNAGG 1 cut(s) 1188
Eco88I CYCGRG 1 cut(s) 469
EcoRI GAATTC 2 cut(s) 419, 641
EcoRV GATATC 1 cut(s) 931
FaeI CATG 6 cut(s) 133, 302, 527, 855, 1096, 1171
FaqI GGGAC 2 cut(s) 411, 1296
FatI CATG 6 cut(s) 129, 298, 523, 851, 1092, 1167
FblI GTMKAC 1 cut(s) 840
Fnu4HI GCNGC 3 cut(s) 67, 198, 271
FokI GGATG 1 cut(s) 941
Fsp4HI GCNGC 3 cut(s) 67, 198, 271
GluI GCNGC 3 cut(s) 67, 198, 271
HapII CCGG 3 cut(s) 681, 908, 1247
Hin1II CATG 6 cut(s) 133, 302, 527, 855, 1096, 1171
HincII GTYRAC 1 cut(s) 841
HindII GTYRAC 1 cut(s) 841
HindIII AAGCTT 1 cut(s) 41
HpaII CCGG 3 cut(s) 681, 908, 1247
HphI GGTGA 6 cut(s) 172, 470, 512, 1001, 1013, 1404
Hpy166II GTNNAC 2 cut(s) 841, 952
Hpy188I TCNGA 7 cut(s) 24, 340, 346, 640, 739, 785, 1151
Hpy188III TCNNGA 9 cut(s) 179, 535, 560, 1084, 1187, 1369, 1382, 1427, 1471
Hpy8I GTNNAC 2 cut(s) 841, 952
Hpy99I CGWCG 1 cut(s) 754
HpyAV CCTTC 2 cut(s) 541, 998
HpyCH4III ACNGT 3 cut(s) 671, 1141, 1440
HpyCH4IV ACGT 1 cut(s) 697
HpyCH4V TGCA 6 cut(s) 197, 270, 380, 392, 806, 851
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpySE526I ACGT 1 cut(s) 697
Hsp92II CATG 6 cut(s) 133, 302, 527, 855, 1096, 1171
Kzo9I GATC 6 cut(s) 71, 553, 562, 864, 1164, 1360
LmnI GCTCC 1 cut(s) 768
Lsp1109I GCAGC 2 cut(s) 209, 282
LweI GCATC 2 cut(s) 367, 920
MaeII ACGT 1 cut(s) 697
MaeIII GTNAC 4 cut(s) 35, 431, 989, 1325
MalI GATC 6 cut(s) 73, 555, 564, 866, 1166, 1362
MboI GATC 6 cut(s) 71, 553, 562, 864, 1164, 1360
MfeI CAATTG 2 cut(s) 190, 831
MflI RGATCY 1 cut(s) 71
MlyI GAGTC 2 cut(s) 846, 1338
MmeI TCCRAC 2 cut(s) 998, 1514
MnlI CCTC 8 cut(s) 295, 298, 475, 988, 1149, 1183, 1329, 1411
MroXI GAANNNNTTC 2 cut(s) 171, 779
MseI TTAA 5 cut(s) 248, 1071, 1160, 1394, 1499
MspA1I CMGCKG 1 cut(s) 653
MspI CCGG 3 cut(s) 681, 908, 1247
MunI CAATTG 2 cut(s) 190, 831
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 1 cut(s) 75
NdeII GATC 6 cut(s) 71, 553, 562, 864, 1164, 1360
NlaIII CATG 6 cut(s) 133, 302, 527, 855, 1096, 1171
NlaIV GGNNCC 1 cut(s) 1284
NmuCI GTSAC 1 cut(s) 989
NspI RCATGY 1 cut(s) 855
NspV TTCGAA 1 cut(s) 372
PaeR7I CTCGAG 1 cut(s) 469
PdmI GAANNNNTTC 2 cut(s) 171, 779
PinAI ACCGGT 1 cut(s) 1246
PkrI GCNGC 3 cut(s) 68, 199, 272
PleI GAGTC 2 cut(s) 845, 1338
PpsI GAGTC 2 cut(s) 845, 1338
Psp1406I AACGTT 1 cut(s) 697
PspN4I GGNNCC 1 cut(s) 1284
PspPI GGNCC 2 cut(s) 87, 1283
PspXI VCTCGAGB 1 cut(s) 469
PstI CTGCAG 1 cut(s) 272
PsuI RGATCY 1 cut(s) 71
PvuII CAGCTG 1 cut(s) 653
RsaI GTAC 3 cut(s) 668, 1025, 1437
RsaNI GTAC 3 cut(s) 667, 1024, 1436
SalI GTCGAC 1 cut(s) 839
SaqAI TTAA 5 cut(s) 248, 1071, 1160, 1394, 1499
SatI GCNGC 3 cut(s) 67, 198, 271
Sau3AI GATC 6 cut(s) 71, 553, 562, 864, 1164, 1360
Sau96I GGNCC 2 cut(s) 87, 1283
ScaI AGTACT 1 cut(s) 1437
SchI GAGTC 2 cut(s) 846, 1338
SfaNI GCATC 2 cut(s) 367, 920
SfcI CTRYAG 1 cut(s) 268
Sfr274I CTCGAG 1 cut(s) 469
SfuI TTCGAA 1 cut(s) 372
SinI GGWCC 2 cut(s) 87, 1283
SlaI CTCGAG 1 cut(s) 469
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
SsiI CCGC 3 cut(s) 66, 158, 1262
TaaI ACNGT 3 cut(s) 671, 1141, 1440
TaiI ACGT 1 cut(s) 700
TaqI TCGA 9 cut(s) 186, 279, 333, 372, 470, 752, 840, 1334, 1347
TaqII GACCGA 1 cut(s) 75
TatI WGTACW 2 cut(s) 1023, 1435
TauI GCSGC 1 cut(s) 69
Tru1I TTAA 5 cut(s) 248, 1071, 1160, 1394, 1499
Tru9I TTAA 5 cut(s) 248, 1071, 1160, 1394, 1499
TseFI GTSAC 1 cut(s) 989
TseI GCWGC 2 cut(s) 197, 270
Tsp45I GTSAC 1 cut(s) 989
TspDTI ATGAA 7 cut(s) 137, 164, 429, 528, 540, 1081, 1116
TspGWI ACGGA 3 cut(s) 738, 755, 1494
VpaK11BI GGWCC 2 cut(s) 87, 1283
XapI RAATTY 5 cut(s) 291, 419, 641, 775, 1485
XceI RCATGY 1 cut(s) 855
XhoI CTCGAG 1 cut(s) 469
XmiI GTMKAC 1 cut(s) 840
XmnI GAANNNNTTC 2 cut(s) 171, 779
ZrmI AGTACT 1 cut(s) 1437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.