Rh7CG461000

Protein of unknown function (DUF1336)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002719
Physical Location & Seq
Forward (+)
61180390 .. 61181107
718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG461000.1

Sequence Viewer

Length: 534 bp
ATGTTCCTTGGTGAAAGTGATGGTGAAGGCATGAGTCTTGTATTATACTTTAAAGTTAGTGAAAATTTTGACACAGACATATCTCCTCAGTTTCAAGAATTTATCAAGAGATTTGTTGAGGATGATACCGAAATGGTTAAGGGGTTCACAAAGGAGTCATTGGTTCCTTTCAGGGAAAGGCTAAAAATTTTGGCTGGATTGGTGAATCCAGACGAGCTCCAACTGAGTTCTGCTGGGAAGAAGCTGATAAGTGCTTATAATGATAAACCAGTGCTTTCGCGCCCTCAACACAATTTCTTCAGGGGGCCTAATTACTTTGAAATTGATCTAGACATACACAGGTTCAGCTACATCTCCAGGAAAGGGCTTGAATCATTCAGAGACAGATTGAAGAATGGGGTACTTCATGTGGGATTAACAATCCAGGCACAAAAACAAGAACTACCAGAGCAAGTCTTGTGTTGTATGCGCTTGAATAAGATTGATTTTGTAAACCATGGTCAAATACCTACTCTTGTTACCATGAATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1336

Protein Analysis

177

Amino Acids

20.41

Weight (kDa)

5.84

Isoelectric Point (pI)

32.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR2_C PF07059 8 - 162 5.4e-36 Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 258
AccII CGCG 1 cut(s) 280
AcsI RAATTY 3 cut(s) 64, 98, 186
AcuI CTGAAG 1 cut(s) 283
AfaI GTAC 1 cut(s) 402
AfiI CCNNNNNNNGG 1 cut(s) 363
AgsI TTSAA 5 cut(s) 95, 320, 371, 391, 475
AjnI CCWGG 2 cut(s) 356, 423
AluBI AGCT 3 cut(s) 217, 244, 348
AluI AGCT 3 cut(s) 217, 244, 348
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 1 cut(s) 375
AoxI GGCC 1 cut(s) 305
ApoI RAATTY 3 cut(s) 64, 98, 186
AspLEI GCGC 2 cut(s) 282, 471
AspS9I GGNCC 1 cut(s) 305
AsuHPI GGTGA 3 cut(s) 23, 35, 214
BanII GRGCYC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 219
BccI CCATC 1 cut(s) 14
BciT130I CCWGG 2 cut(s) 358, 425
BcoDI GTCTC 1 cut(s) 375
BfaI CTAG 1 cut(s) 329
Bme1390I CCNGG 2 cut(s) 358, 425
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 2 cut(s) 165, 306
BmrFI CCNGG 2 cut(s) 358, 425
BpmI CTGGAG 1 cut(s) 340
BsaJI CCNNGG 2 cut(s) 7, 496
Bsc4I CCNNNNNNNGG 1 cut(s) 363
Bse1I ACTGG 1 cut(s) 269
BseBI CCWGG 2 cut(s) 358, 425
BseDI CCNNGG 2 cut(s) 7, 496
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 1 cut(s) 363
BseMII CTCAG 2 cut(s) 101, 215
BseNI ACTGG 1 cut(s) 269
BseRI GAGGAG 1 cut(s) 75
BseYI CCCAGC 1 cut(s) 233
Bsh1236I CGCG 1 cut(s) 280
BshFI GGCC 1 cut(s) 307
BsiHKAI GWGCWC 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 363
BsmAI GTCTC 1 cut(s) 375
BsnI GGCC 1 cut(s) 307
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 1 cut(s) 325
Bsp19I CCATGG 1 cut(s) 496
BspANI GGCC 1 cut(s) 307
BspCNI CTCAG 2 cut(s) 100, 216
BspFNI CGCG 1 cut(s) 280
BspLI GGNNCC 2 cut(s) 165, 306
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 2 cut(s) 7, 496
BssMI GATC 1 cut(s) 325
BssT1I CCWWGG 2 cut(s) 7, 496
Bst2UI CCWGG 2 cut(s) 358, 425
BstDEI CTNAG 2 cut(s) 87, 224
BstDSI CCRYGG 1 cut(s) 496
BstF5I GGATG 1 cut(s) 127
BstFNI CGCG 1 cut(s) 280
BstHHI GCGC 2 cut(s) 282, 471
BstKTI GATC 1 cut(s) 328
BstMAI GTCTC 1 cut(s) 375
BstMBI GATC 1 cut(s) 325
BstNI CCWGG 2 cut(s) 358, 425
BstSCI CCNGG 2 cut(s) 356, 423
BstUI CGCG 1 cut(s) 280
BsuRI GGCC 1 cut(s) 307
BtgI CCRYGG 1 cut(s) 496
BtsCI GGATG 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 276
CfoI GCGC 2 cut(s) 282, 471
Cfr13I GGNCC 1 cut(s) 305
Csp6I GTAC 1 cut(s) 401
CviAII CATG 4 cut(s) 31, 407, 497, 523
CviJI RGCY 7 cut(s) 181, 194, 217, 244, 307, 348, 367
CviKI_1 RGCY 7 cut(s) 181, 194, 217, 244, 307, 348, 367
CviQI GTAC 1 cut(s) 401
DdeI CTNAG 2 cut(s) 87, 224
DpnI GATC 1 cut(s) 327
DpnII GATC 1 cut(s) 325
DraI TTTAAA 1 cut(s) 52
Ecl136II GAGCTC 1 cut(s) 217
Eco130I CCWWGG 2 cut(s) 7, 496
Eco24I GRGCYC 1 cut(s) 219
Eco53kI GAGCTC 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 283
EcoICRI GAGCTC 1 cut(s) 217
EcoO109I RGGNCCY 1 cut(s) 305
EcoRII CCWGG 2 cut(s) 356, 423
EcoT14I CCWWGG 2 cut(s) 7, 496
EcoT38I GRGCYC 1 cut(s) 219
ErhI CCWWGG 2 cut(s) 7, 496
FaeI CATG 4 cut(s) 34, 410, 500, 526
FaiI YATR 9 cut(s) 32, 46, 80, 258, 335, 408, 467, 498, 524
FatI CATG 4 cut(s) 30, 406, 496, 522
FokI GGATG 1 cut(s) 134
FriOI GRGCYC 1 cut(s) 219
FspBI CTAG 1 cut(s) 329
GlaI GCGC 2 cut(s) 281, 470
GsaI CCCAGC 1 cut(s) 237
GsuI CTGGAG 1 cut(s) 340
HaeIII GGCC 1 cut(s) 307
HhaI GCGC 2 cut(s) 282, 471
Hin1II CATG 4 cut(s) 34, 410, 500, 526
Hin6I GCGC 2 cut(s) 280, 469
HinP1I GCGC 2 cut(s) 280, 469
HinfI GANTC 4 cut(s) 34, 155, 205, 371
HphI GGTGA 3 cut(s) 23, 35, 214
Hpy166II GTNNAC 2 cut(s) 147, 493
Hpy188I TCNGA 1 cut(s) 380
Hpy188III TCNNGA 4 cut(s) 95, 106, 209, 329
Hpy8I GTNNAC 2 cut(s) 147, 493
HpyAV CCTTC 1 cut(s) 20
HpyF3I CTNAG 2 cut(s) 87, 224
Hsp92II CATG 4 cut(s) 34, 410, 500, 526
HspAI GCGC 2 cut(s) 280, 469
Kzo9I GATC 1 cut(s) 325
LmnI GCTCC 1 cut(s) 222
MaeI CTAG 1 cut(s) 329
MaeIII GTNAC 1 cut(s) 517
MalI GATC 1 cut(s) 327
MboI GATC 1 cut(s) 325
MboII GAAGA 3 cut(s) 250, 289, 403
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 6 cut(s) 64, 98, 186, 292, 310, 321
MlyI GAGTC 2 cut(s) 43, 164
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 3 cut(s) 96, 112, 294
MseI TTAA 3 cut(s) 51, 138, 416
MspR9I CCNGG 2 cut(s) 358, 425
MvaI CCWGG 2 cut(s) 358, 425
MvnI CGCG 1 cut(s) 280
NcoI CCATGG 1 cut(s) 496
NdeII GATC 1 cut(s) 325
NlaIII CATG 4 cut(s) 34, 410, 500, 526
NlaIV GGNNCC 2 cut(s) 165, 306
PfeI GAWTC 2 cut(s) 205, 371
PfoI TCCNGGA 1 cut(s) 356
PleI GAGTC 2 cut(s) 42, 163
PpsI GAGTC 2 cut(s) 42, 163
PsiI TTATAA 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 219
Psp6I CCWGG 2 cut(s) 356, 423
PspFI CCCAGC 1 cut(s) 233
PspGI CCWGG 2 cut(s) 356, 423
PspN4I GGNNCC 2 cut(s) 165, 306
PspPI GGNCC 1 cut(s) 305
RsaI GTAC 1 cut(s) 402
RsaNI GTAC 1 cut(s) 401
SacI GAGCTC 1 cut(s) 219
SaqAI TTAA 3 cut(s) 51, 138, 416
Sau3AI GATC 1 cut(s) 325
Sau96I GGNCC 1 cut(s) 305
SchI GAGTC 2 cut(s) 43, 164
ScrFI CCNGG 2 cut(s) 358, 425
SduI GDGCHC 1 cut(s) 219
SetI ASST 5 cut(s) 219, 246, 344, 350, 511
Sse9I AATT 6 cut(s) 64, 98, 186, 292, 310, 321
SspMI CTAG 1 cut(s) 329
SstI GAGCTC 1 cut(s) 219
StyD4I CCNGG 2 cut(s) 356, 423
StyI CCWWGG 2 cut(s) 7, 496
TasI AATT 6 cut(s) 64, 98, 186, 292, 310, 321
TfiI GAWTC 2 cut(s) 205, 371
Tru1I TTAA 3 cut(s) 51, 138, 416
Tru9I TTAA 3 cut(s) 51, 138, 416
TscAI CASTG 1 cut(s) 276
TspDTI ATGAA 1 cut(s) 395
TspRI CASTG 1 cut(s) 276
XapI RAATTY 3 cut(s) 64, 98, 186
XbaI TCTAGA 1 cut(s) 328
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.