pycom13g05950

Protein of unknown function (DUF1336)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
3903060 .. 3905712
2653 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g05950.7

Sequence Viewer

Length: 1449 bp
ATGGGCGTTTGTTACTCAAGACCACATGAAACTATCAAAGCTCATCAGAAGAAGGTCCACAGATCCGGCAAACGCCGGAGTAAGGGGAGGAAGACGAAGAAGGTTGCCTCCGCTGCCATTCCCGATGCGCCTAAAAGACAGTCTGTGAGTGAGTTTGTGCATCTTGACTTCGAGAAGGGTGCTGCAACAACCTGCAAGAGATCTGAGGTTTCTAATGGAACATTTCATCTCACTCAGCTTCAGTGGAACCACAGTCAAATAGATGCAAATGGCGGGAAAGGCCCAGGGGAAGCATGGTTTGACTCACTAAGCATGATGGAATCTGATTCAGAAGACGATTTCTGCAGTGTGCATGGAGGGAACATCCCAAATGCTCAACTGGTGCAGTATGAAACTGCATCATGCATTGTCGATAATGGATGTAAGTACGAAGGGTTCTACGAAAGTTATCTAAAGATAGATGGAAATGCACGCCATTCTGTCGAGAAAACCCAAGTGAGTTTCAACGACAAGAATCAGAAGAACCCCGCGGCGGTGATCATGCTTTCTTATAAGAGGAAATCCGTTGATGACAGCGAAAGGAAAAGTGCGTCCGATCAGAAGTACTTATTCCGTCCAAGAGCAGGATTTGGAATCCCTTGCTCAACGGAAGAGAAGCCAGCACGGGATCGATCCTGGTCTCCAGTTCCACCCTCAGTATTCAAGCTCCGCGGCGAGAATTACTTCAAAGATAAACTGAAGTACCCGGCTCCAAACTGCAGCTCGTACGTACCAATTGGTGTCGATTTGTTCATCTGCCCGCGAAAGAGAGATCACATTGCTCAGCATCTTGAGCTTCCTTCTGTAAAACCACATGACAAAGTTCCTTCCCTCCTCATTGTTAACATCCAGTTGCCTACTTATCCTACAACAATGTTCCTCGGCGAATGCGATGGGGAAGGCATGAGTCTTGTGCTATATTTCAAAGTGAATGAAAACTTTGAAAAAGAGATATCACCTCAGTTTCAAGACAGCATCAGGAAATTTGTTGAGGATGAGACTGAGAAGGTGAAAGGGTTTGCAAAGGAGTCTGTGGTTCCTTTCAGGGAAAGGCTAAAGATCATGGCTGGATTGGTCAATCCAGATGACCTCCAGTTGAGTTCTACTGAAAGGAAGCTCATACATGCTTACAATGATAAGCCCGTTCTGTCACGCCCTCAACACAATTTCTTCAGGGGACCTAATTACTTTGAGATTGACCTAGATATACATAGGTTTAGCTACATATCCAGGAAAGGACTTGAATCATTCAGAGAGACTTTGAAGAATGGGGTACTTGATTTGGGATTAACAATCCAGGCACAAAAACAAGAGGAACTGCCAGAGCAAGTCTTGTGCTGCCTGCGCTTGAACAAGATTGAATTTGTGAACCATGGTCAAATTCCGACTCTCGTAACTATGGACGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

483

Amino Acids

54.76

Weight (kDa)

8.57

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 552
Acc36I ACCTGC 1 cut(s) 200
AccII CGCG 3 cut(s) 530, 711, 802
AciI CCGC 8 cut(s) 111, 273, 528, 530, 533, 709, 711, 800
AclWI GGATC 3 cut(s) 57, 666, 675
AcsI RAATTY 3 cut(s) 1022, 1400, 1419
AcuI CTGAAG 3 cut(s) 224, 758, 1195
AfaI GTAC 6 cut(s) 428, 605, 743, 767, 771, 1314
AfiI CCNNNNNNNGG 3 cut(s) 82, 532, 623
AjnI CCWGG 4 cut(s) 283, 674, 1268, 1335
AluBI AGCT 7 cut(s) 41, 238, 706, 762, 835, 1156, 1260
AluI AGCT 7 cut(s) 41, 238, 706, 762, 835, 1156, 1260
Alw26I GTCTC 3 cut(s) 684, 1031, 1289
AlwI GGATC 3 cut(s) 57, 666, 675
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 4 cut(s) 113, 182, 759, 1377
ApoI RAATTY 3 cut(s) 1022, 1400, 1419
Asp700I GAANNNNTTC 1 cut(s) 722
AspLEI GCGC 2 cut(s) 130, 1386
AspS9I GGNCC 3 cut(s) 55, 281, 1217
AsuC2I CCSGG 1 cut(s) 746
AsuHPI GGTGA 3 cut(s) 547, 987, 1060
AvaII GGWCC 2 cut(s) 55, 1217
BaeI ACNNNNGTAYC 2 cut(s) 725, 758
BbsI GAAGAC 2 cut(s) 98, 339
BbvI GCAGC 4 cut(s) 100, 169, 771, 1364
BccI CCATC 3 cut(s) 310, 455, 926
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BciT130I CCWGG 4 cut(s) 285, 676, 1270, 1337
BclI TGATCA 1 cut(s) 537
BcnI CCSGG 1 cut(s) 746
BcoDI GTCTC 3 cut(s) 684, 1031, 1289
BfaI CTAG 1 cut(s) 1241
BfmI CTRYAG 2 cut(s) 343, 757
BfuAI ACCTGC 1 cut(s) 200
BglII AGATCT 1 cut(s) 200
BisI GCNGC 6 cut(s) 114, 183, 531, 712, 760, 1378
BlpI GCTNAGC 1 cut(s) 822
BlsI GCNGC 6 cut(s) 115, 184, 532, 713, 761, 1379
BmcAI AGTACT 1 cut(s) 605
Bme1390I CCNGG 5 cut(s) 285, 676, 746, 1270, 1337
Bme18I GGWCC 2 cut(s) 55, 1217
BmgT120I GGNCC 3 cut(s) 55, 281, 1217
BmiI GGNNCC 4 cut(s) 248, 750, 1077, 1218
BmrFI CCNGG 5 cut(s) 285, 676, 746, 1270, 1337
BmsI GCATC 6 cut(s) 115, 169, 253, 407, 835, 1023
BpiI GAAGAC 2 cut(s) 98, 339
BpmI CTGGAG 2 cut(s) 666, 1115
Bpu1102I GCTNAGC 1 cut(s) 822
BpuEI CTTGAG 1 cut(s) 851
BpuMI CCSGG 1 cut(s) 746
Bsa29I ATCGAT 1 cut(s) 670
BsaAI YACGTR 1 cut(s) 769
BsaI GGTCTC 1 cut(s) 684
BsaJI CCNNGG 6 cut(s) 283, 284, 528, 709, 919, 1411
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 532, 623
Bse1I ACTGG 4 cut(s) 384, 683, 889, 1132
Bse3DI GCAATG 1 cut(s) 816
BseBI CCWGG 4 cut(s) 285, 676, 1270, 1337
BseCI ATCGAT 1 cut(s) 670
BseDI CCNNGG 6 cut(s) 283, 284, 528, 709, 919, 1411
BseGI GGATG 4 cut(s) 363, 425, 885, 1039
BseLI CCNNNNNNNGG 3 cut(s) 82, 532, 623
BseMI GCAATG 1 cut(s) 816
BseMII CTCAG 6 cut(s) 195, 248, 708, 836, 1013, 1032
BseNI ACTGG 4 cut(s) 384, 683, 889, 1132
BseRI GAGGAG 1 cut(s) 863
BseXI GCAGC 4 cut(s) 100, 169, 771, 1364
BsgI GTGCAG 1 cut(s) 404
Bsh1236I CGCG 3 cut(s) 530, 711, 802
BshFI GGCC 1 cut(s) 282
BshVI ATCGAT 1 cut(s) 670
BsiSI CCGG 3 cut(s) 66, 76, 746
BsiWI CGTACG 1 cut(s) 765
BslFI GGGAC 1 cut(s) 1230
BslI CCNNNNNNNGG 3 cut(s) 82, 532, 623
BsmAI GTCTC 3 cut(s) 684, 1031, 1289
BsmFI GGGAC 1 cut(s) 1230
BsmI GAATGC 1 cut(s) 932
BsnI GGCC 1 cut(s) 282
Bso31I GGTCTC 1 cut(s) 684
Bsp143I GATC 8 cut(s) 62, 200, 537, 595, 667, 671, 811, 1098
Bsp1720I GCTNAGC 1 cut(s) 822
Bsp19I CCATGG 1 cut(s) 1411
BspACI CCGC 8 cut(s) 111, 273, 528, 530, 533, 709, 711, 800
BspANI GGCC 1 cut(s) 282
BspCNI CTCAG 6 cut(s) 196, 247, 707, 835, 1012, 1033
BspDI ATCGAT 1 cut(s) 670
BspFNI CGCG 3 cut(s) 530, 711, 802
BspLI GGNNCC 4 cut(s) 248, 750, 1077, 1218
BspMAI CTGCAG 2 cut(s) 347, 761
BspMI ACCTGC 1 cut(s) 200
BspPI GGATC 3 cut(s) 57, 666, 675
BspTNI GGTCTC 1 cut(s) 684
BsrDI GCAATG 1 cut(s) 816
BsrI ACTGG 4 cut(s) 384, 683, 889, 1132
BssECI CCNNGG 6 cut(s) 283, 284, 528, 709, 919, 1411
BssMI GATC 8 cut(s) 62, 200, 537, 595, 667, 671, 811, 1098
BssT1I CCWWGG 1 cut(s) 1411
Bst2UI CCWGG 4 cut(s) 285, 676, 1270, 1337
Bst4CI ACNGT 2 cut(s) 141, 254
Bst6I CTCTTC 1 cut(s) 645
BstBAI YACGTR 1 cut(s) 769
BstC8I GCNNGC 4 cut(s) 472, 660, 800, 1382
BstDEI CTNAG 7 cut(s) 204, 234, 308, 694, 822, 999, 1041
BstDSI CCRYGG 3 cut(s) 528, 709, 1411
BstF5I GGATG 4 cut(s) 363, 425, 885, 1039
BstFNI CGCG 3 cut(s) 530, 711, 802
BstHHI GCGC 2 cut(s) 130, 1386
BstKTI GATC 8 cut(s) 65, 203, 540, 598, 670, 674, 814, 1101
BstMAI GTCTC 3 cut(s) 684, 1031, 1289
BstMBI GATC 8 cut(s) 62, 200, 537, 595, 667, 671, 811, 1098
BstMWI GCNNNNNNNGC 4 cut(s) 113, 279, 832, 1383
BstNI CCWGG 4 cut(s) 285, 676, 1270, 1337
BstNSI RCATGY 1 cut(s) 1166
BstSCI CCNGG 5 cut(s) 283, 674, 744, 1268, 1335
BstSFI CTRYAG 2 cut(s) 343, 757
BstSNI TACGTA 1 cut(s) 769
BstUI CGCG 3 cut(s) 530, 711, 802
BstV1I GCAGC 4 cut(s) 100, 169, 771, 1364
BstV2I GAAGAC 2 cut(s) 98, 339
BstX2I RGATCY 2 cut(s) 62, 200
BstYI RGATCY 2 cut(s) 62, 200
Bsu15I ATCGAT 1 cut(s) 670
BsuRI GGCC 1 cut(s) 282
BsuTUI ATCGAT 1 cut(s) 670
BtgI CCRYGG 3 cut(s) 528, 709, 1411
BtgZI GCGATG 1 cut(s) 945
BtsCI GGATG 4 cut(s) 363, 425, 885, 1039
BtsI GCAGTG 1 cut(s) 352
BtsIMutI CAGTG 2 cut(s) 248, 352
BveI ACCTGC 1 cut(s) 200
Cac8I GCNNGC 4 cut(s) 472, 660, 800, 1382
CfoI GCGC 2 cut(s) 130, 1386
Cfr13I GGNCC 3 cut(s) 55, 281, 1217
Cfr42I CCGCGG 2 cut(s) 531, 712
ClaI ATCGAT 1 cut(s) 670
CseI GACGC 1 cut(s) 579
Csp6I GTAC 6 cut(s) 427, 604, 742, 766, 770, 1313
CviQI GTAC 6 cut(s) 427, 604, 742, 766, 770, 1313
DdeI CTNAG 7 cut(s) 204, 234, 308, 694, 822, 999, 1041
DpnI GATC 8 cut(s) 64, 202, 539, 597, 669, 673, 813, 1100
DpnII GATC 8 cut(s) 62, 200, 537, 595, 667, 671, 811, 1098
Eam1104I CTCTTC 1 cut(s) 645
EarI CTCTTC 1 cut(s) 645
Eco105I TACGTA 1 cut(s) 769
Eco130I CCWWGG 1 cut(s) 1411
Eco31I GGTCTC 1 cut(s) 684
Eco32I GATATC 1 cut(s) 993
Eco47I GGWCC 2 cut(s) 55, 1217
Eco57I CTGAAG 3 cut(s) 224, 758, 1195
EcoO109I RGGNCCY 1 cut(s) 1217
EcoRII CCWGG 4 cut(s) 283, 674, 1268, 1335
EcoRV GATATC 1 cut(s) 993
EcoT14I CCWWGG 1 cut(s) 1411
EcoT22I ATGCAT 1 cut(s) 407
ErhI CCWWGG 1 cut(s) 1411
FaqI GGGAC 1 cut(s) 1230
FauI CCCGC 3 cut(s) 266, 535, 807
FbaI TGATCA 1 cut(s) 537
Fnu4HI GCNGC 6 cut(s) 114, 183, 531, 712, 760, 1378
FokI GGATG 4 cut(s) 350, 432, 872, 1046
Fsp4HI GCNGC 6 cut(s) 114, 183, 531, 712, 760, 1378
FspBI CTAG 1 cut(s) 1241
GlaI GCGC 2 cut(s) 129, 1385
GluI GCNGC 6 cut(s) 114, 183, 531, 712, 760, 1378
GsuI CTGGAG 2 cut(s) 666, 1115
HaeIII GGCC 1 cut(s) 282
HapII CCGG 3 cut(s) 66, 76, 746
HgaI GACGC 1 cut(s) 579
HhaI GCGC 2 cut(s) 130, 1386
Hin6I GCGC 2 cut(s) 128, 1384
HinP1I GCGC 2 cut(s) 128, 1384
HincII GTYRAC 1 cut(s) 883
HindII GTYRAC 1 cut(s) 883
HinfI GANTC 9 cut(s) 302, 320, 326, 514, 633, 946, 1067, 1283, 1426
HpaI GTTAAC 1 cut(s) 883
HpaII CCGG 3 cut(s) 66, 76, 746
HphI GGTGA 3 cut(s) 547, 987, 1060
Hpy166II GTNNAC 3 cut(s) 58, 883, 1408
Hpy188I TCNGA 9 cut(s) 48, 205, 325, 331, 519, 595, 600, 1292, 1425
Hpy188III TCNNGA 9 cut(s) 18, 122, 164, 172, 484, 830, 1007, 1018, 1121
Hpy8I GTNNAC 3 cut(s) 58, 883, 1408
HpyAV CCTTC 8 cut(s) 46, 94, 169, 425, 849, 876, 932, 1039
HpyCH4III ACNGT 2 cut(s) 141, 254
HpyCH4IV ACGT 1 cut(s) 768
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 279, 832, 1383
HpyF3I CTNAG 7 cut(s) 204, 234, 308, 694, 822, 999, 1041
HpySE526I ACGT 1 cut(s) 768
HspAI GCGC 2 cut(s) 128, 1384
Ksp22I TGATCA 1 cut(s) 537
KspAI GTTAAC 1 cut(s) 883
KspI CCGCGG 2 cut(s) 531, 712
Kzo9I GATC 8 cut(s) 62, 200, 537, 595, 667, 671, 811, 1098
LmnI GCTCC 2 cut(s) 711, 754
Lsp1109I GCAGC 4 cut(s) 100, 169, 771, 1364
LweI GCATC 6 cut(s) 115, 169, 253, 407, 835, 1023
MaeI CTAG 1 cut(s) 1241
MaeII ACGT 1 cut(s) 768
MaeIII GTNAC 3 cut(s) 11, 1188, 1432
MalI GATC 8 cut(s) 64, 202, 539, 597, 669, 673, 813, 1100
MboI GATC 8 cut(s) 62, 200, 537, 595, 667, 671, 811, 1098
MboII GAAGA 8 cut(s) 61, 103, 109, 344, 532, 662, 1201, 1315
MfeI CAATTG 1 cut(s) 774
MflI RGATCY 2 cut(s) 62, 200
MluCI AATT 7 cut(s) 718, 774, 1022, 1204, 1222, 1400, 1419
MlyI GAGTC 4 cut(s) 296, 955, 1076, 1420
MmeI TCCRAC 1 cut(s) 1448
Mph1103I ATGCAT 1 cut(s) 407
MroXI GAANNNNTTC 1 cut(s) 722
MseI TTAA 3 cut(s) 882, 1328, 1447
MspA1I CMGCKG 3 cut(s) 113, 530, 711
MspI CCGG 3 cut(s) 66, 76, 746
MspR9I CCNGG 5 cut(s) 285, 676, 746, 1270, 1337
MunI CAATTG 1 cut(s) 774
Mva1269I GAATGC 1 cut(s) 932
MvaI CCWGG 4 cut(s) 285, 676, 1270, 1337
MvnI CGCG 3 cut(s) 530, 711, 802
MwoI GCNNNNNNNGC 4 cut(s) 113, 279, 832, 1383
NciI CCSGG 1 cut(s) 746
NcoI CCATGG 1 cut(s) 1411
NdeII GATC 8 cut(s) 62, 200, 537, 595, 667, 671, 811, 1098
NlaIV GGNNCC 4 cut(s) 248, 750, 1077, 1218
NmeAIII GCCGAG 1 cut(s) 900
NmuCI GTSAC 1 cut(s) 1188
NsiI ATGCAT 1 cut(s) 407
NspI RCATGY 1 cut(s) 1166
PasI CCCWGGG 1 cut(s) 284
PcsI WCGNNNNNNNCGW 1 cut(s) 927
PctI GAATGC 1 cut(s) 932
PdmI GAANNNNTTC 1 cut(s) 722
PfeI GAWTC 5 cut(s) 320, 326, 514, 633, 1283
Pfl23II CGTACG 1 cut(s) 765
PfoI TCCNGGA 1 cut(s) 1268
PkrI GCNGC 6 cut(s) 115, 184, 532, 713, 761, 1379
PleI GAGTC 4 cut(s) 296, 954, 1075, 1420
PpsI GAGTC 4 cut(s) 296, 954, 1075, 1420
Ppu21I YACGTR 1 cut(s) 769
PpuMI RGGWCCY 1 cut(s) 1217
PsiI TTATAA 1 cut(s) 552
Psp5II RGGWCCY 1 cut(s) 1217
Psp6I CCWGG 4 cut(s) 283, 674, 1268, 1335
PspGI CCWGG 4 cut(s) 283, 674, 1268, 1335
PspLI CGTACG 1 cut(s) 765
PspN4I GGNNCC 4 cut(s) 248, 750, 1077, 1218
PspPI GGNCC 3 cut(s) 55, 281, 1217
PspPPI RGGWCCY 1 cut(s) 1217
PsrI GAACNNNNNNTAC 2 cut(s) 419, 451
PstI CTGCAG 2 cut(s) 347, 761
PsuI RGATCY 2 cut(s) 62, 200
RsaI GTAC 6 cut(s) 428, 605, 743, 767, 771, 1314
RsaNI GTAC 6 cut(s) 427, 604, 742, 766, 770, 1313
SacII CCGCGG 2 cut(s) 531, 712
SaqAI TTAA 3 cut(s) 882, 1328, 1447
SatI GCNGC 6 cut(s) 114, 183, 531, 712, 760, 1378
Sau3AI GATC 8 cut(s) 62, 200, 537, 595, 667, 671, 811, 1098
Sau96I GGNCC 3 cut(s) 55, 281, 1217
ScaI AGTACT 1 cut(s) 605
SchI GAGTC 4 cut(s) 296, 955, 1076, 1420
ScrFI CCNGG 5 cut(s) 285, 676, 746, 1270, 1337
SfaNI GCATC 6 cut(s) 115, 169, 253, 407, 835, 1023
SfcI CTRYAG 2 cut(s) 343, 757
Sfr303I CCGCGG 2 cut(s) 531, 712
SgrBI CCGCGG 2 cut(s) 531, 712
SinI GGWCC 2 cut(s) 55, 1217
SmlI CTYRAG 2 cut(s) 16, 830
SmoI CTYRAG 2 cut(s) 16, 830
SnaBI TACGTA 1 cut(s) 769
Sse9I AATT 7 cut(s) 718, 774, 1022, 1204, 1222, 1400, 1419
SsiI CCGC 8 cut(s) 111, 273, 528, 530, 533, 709, 711, 800
SspMI CTAG 1 cut(s) 1241
StyD4I CCNGG 5 cut(s) 283, 674, 744, 1268, 1335
StyI CCWWGG 1 cut(s) 1411
TaaI ACNGT 2 cut(s) 141, 254
TaiI ACGT 1 cut(s) 771
TaqI TCGA 5 cut(s) 171, 411, 483, 670, 783
TasI AATT 7 cut(s) 718, 774, 1022, 1204, 1222, 1400, 1419
TatI WGTACW 1 cut(s) 603
TauI GCSGC 2 cut(s) 533, 714
TfiI GAWTC 5 cut(s) 320, 326, 514, 633, 1283
Tru1I TTAA 3 cut(s) 882, 1328, 1447
Tru9I TTAA 3 cut(s) 882, 1328, 1447
TscAI CASTG 2 cut(s) 248, 352
TseFI GTSAC 1 cut(s) 1188
TseI GCWGC 4 cut(s) 113, 182, 759, 1377
Tsp45I GTSAC 1 cut(s) 1188
TspDTI ATGAA 5 cut(s) 42, 215, 405, 781, 987
TspGWI ACGGA 3 cut(s) 553, 602, 662
TspRI CASTG 2 cut(s) 248, 352
VpaK11BI GGWCC 2 cut(s) 55, 1217
XapI RAATTY 3 cut(s) 1022, 1400, 1419
XceI RCATGY 1 cut(s) 1166
XcmI CCANNNNNNNNNTGG 1 cut(s) 291
XmnI GAANNNNTTC 1 cut(s) 722
XspI CTAG 1 cut(s) 1241
ZrmI AGTACT 1 cut(s) 605
Zsp2I ATGCAT 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.