Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002719

Physical Location & Seq

Genomic Coordinates Reverse (-)

43905688 .. 43908483

Gene Structure 2796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0266600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGAGGGAGTAGAGCACAGAACAGTCAAAGTCAACGGCATCAACATGCACGTAGCCGAGAAAGGCCAAGGCCCGGTGGTCCTATTCCTCCACGGCTTCCCGGAGCTCTGGTACTCATGGAGGCACCAAATCCAGACCCTGGCCTTGCTCGGCTACCGAGCCGTGGCGCTATTGGACGCCGTCGCCGGCGACCAGGAGAAGGTGTTCGTGGTCGGGCACGACTGGGGGGCAATCATGGCTTGGTATCTCTGCCTGTTTCGGCCGGACCGAGTCAAGGCTCTGGTCAACTTGAGCGTGCAATTCATTCCTAGAAATCCTCAGATGAAGTTTGTTGAATCCATGAAAGCTGCTTATGGGGACGACTATTATATGTGCAGATTTCAGGAGCCTGGAGAGATAGAAGCCGAGTTCGCCCAAATTGGTACTGCAAGAGTTATTAGGGAATTCTTGACCTTTCGCCACCCTGGTCCGCTTTTCCTCCCTAAAGGTAAACTCTTTGGACATCCCCCAGATGCTCCGATCCCCTTGCCAAGTTGGTTGTCTGAGGATGATGTTAACTACTACGTTAGCAAATTTGAGAAGAAGGGCTTCACTGGTGGCATAAACTACTACCGAAACCTTGACCGAAATTGGGAACTCCTTGCACCTTGGACTGGCGCTCAAGTGAAAGTTCCAGTTAAGTTCATTGTGGGAGACCAAGACCTAGTTTATAATTCTCTTGGCGCCAAGGATTTCATACACAATGGCGGGTTCAAGAAATATGTGCCGTTCTTGGAAGAGGTGGTTGTAATGGAAGGAGTTGCCCATTATAACAACCAAGAAAAGGCCGATGAAATCAGTGAACACATTCACGACTTCATCAAGAAATTCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1336

Protein Analysis

291

Amino Acids

33.37

Weight (kDa)

6.13

Isoelectric Point (pI)

29.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_6	PF12697	50 - 279	9.1e-06	Alpha/beta hydrolase family
Abhydrolase_1	PF00561	64 - 103	2.2e-07	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13970
fragaria_vesca	FvH4_4g30650 FvH4_4g30650 FvH4_4g30650 FvH4_4g30650
malus_domestica	MD13G1067700.v1.1 MD16G1066600.v1.1
prunus_persica	Prupe.1G280600_v2.0.a1 Prupe.1G280600_v2.0.a1 Prupe.1G280600_v2.0.a1 Prupe.1G280600_v2.0.a1
pyrus_communis	pycom13g05950 pycom16g05800
rosa_chinensis	RchiOBHm_Chr4g0433211 RchiOBHm_Chr4g0439051 RchiOBHm_Chr7g0234381
rosa_laevigata	RLG00000006306 RLG00000006774
rosa_multiflora	Rmu_sc0000957.1_g000008 Rmu_sc0001338.1_g000003
rosa_roxburghii	Rroxscaffold_5G00374750 Rroxscaffold_5G00380050
rosa_rugosa	Rorug04G0266600 Rorug04G0266700 Rorug04G0266800 Rorug04G0266900 Rorug04G0315200
rosa_samantha	Rh4AG321500 Rh4AG366000 Rh4BG328600 Rh4BG377300 Rh4CG344000 Rh4CG391400 Rh4DG325300 Rh4DG372000 Rh7CG461000
rosa_wichuraiana	Rw0G007430 Rw0G016980 Rw4G027840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	711, 810
AccB1I	GGYRCC	2 cut(s)	123, 722
AccB7I	CCANNNNNTGG	1 cut(s)	139
AciI	CCGC	2 cut(s)	470, 747
AclWI	GGATC	1 cut(s)	514
AcoI	YGGCCR	1 cut(s)	260
AcsI	RAATTY	3 cut(s)	443, 572, 866
AcyI	GRCGYC	2 cut(s)	177, 723
AfaI	GTAC	2 cut(s)	113, 424
AfiI	CCNNNNNNNGG	8 cut(s)	73, 139, 163, 199, 274, 631, 653, 823
AgsI	TTSAA	2 cut(s)	335, 754
AjnI	CCWGG	4 cut(s)	138, 192, 388, 463
AloI	GAACNNNNNNTCC	2 cut(s)	188, 220
AluBI	AGCT	2 cut(s)	106, 347
AluI	AGCT	2 cut(s)	106, 347
Alw21I	GWGCWC	2 cut(s)	18, 108
Alw26I	GTCTC	1 cut(s)	687
AlwI	GGATC	1 cut(s)	514
AlwNI	CAGNNNCTG	1 cut(s)	139
AoxI	GGCC	5 cut(s)	64, 70, 141, 260, 825
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	3 cut(s)	443, 572, 866
Asp700I	GAANNNNTTC	3 cut(s)	203, 587, 846
AspLEI	GCGC	3 cut(s)	169, 659, 725
AspS9I	GGNCC	4 cut(s)	71, 79, 265, 467
AsuC2I	CCSGG	2 cut(s)	74, 101
AvaII	GGWCC	3 cut(s)	79, 265, 467
BaeGI	GKGCMC	1 cut(s)	219
BanI	GGYRCC	2 cut(s)	123, 722
BanII	GRGCYC	1 cut(s)	108
Bbv12I	GWGCWC	2 cut(s)	18, 108
BbvI	GCAGC	1 cut(s)	334
BceAI	ACGGC	5 cut(s)	52, 109, 146, 164, 751
BcgI	CGANNNNNNTGC	2 cut(s)	508, 542
BciT130I	CCWGG	4 cut(s)	140, 194, 390, 465
BcnI	CCSGG	2 cut(s)	74, 101
BcoDI	GTCTC	1 cut(s)	687
BfaI	CTAG	2 cut(s)	309, 704
BfoI	RGCGCY	3 cut(s)	170, 660, 726
BisI	GCNGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	349
Bme1390I	CCNGG	6 cut(s)	74, 101, 140, 194, 390, 465
Bme18I	GGWCC	3 cut(s)	79, 265, 467
BmgT120I	GGNCC	4 cut(s)	71, 79, 265, 467
BmiI	GGNNCC	3 cut(s)	125, 387, 724
BmrFI	CCNGG	6 cut(s)	74, 101, 140, 194, 390, 465
BmrI	ACTGGG	1 cut(s)	232
BmsI	GCATC	2 cut(s)	48, 502
BmuI	ACTGGG	1 cut(s)	232
BpmI	CTGGAG	1 cut(s)	411
BpuEI	CTTGAG	2 cut(s)	310, 645
BpuMI	CCSGG	2 cut(s)	74, 101
BsaAI	YACGTR	1 cut(s)	52
BsaHI	GRCGYC	2 cut(s)	177, 723
BsaI	GGTCTC	1 cut(s)	687
BsaJI	CCNNGG	7 cut(s)	67, 91, 138, 162, 463, 647, 726
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 188, 218
Bsc4I	CCNNNNNNNGG	8 cut(s)	73, 139, 163, 199, 274, 631, 653, 823
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	4 cut(s)	227, 598, 658, 674
BseBI	CCWGG	4 cut(s)	140, 194, 390, 465
BseDI	CCNNGG	7 cut(s)	67, 91, 138, 162, 463, 647, 726
BseGI	GGATG	2 cut(s)	502, 553
BseLI	CCNNNNNNNGG	8 cut(s)	73, 139, 163, 199, 274, 631, 653, 823
BseMII	CTCAG	2 cut(s)	332, 534
BseNI	ACTGG	4 cut(s)	227, 598, 658, 674
BseSI	GKGCMC	1 cut(s)	219
BseX3I	CGGCCG	1 cut(s)	260
BseXI	GCAGC	1 cut(s)	334
BsgI	GTGCAG	1 cut(s)	394
Bsh1285I	CGRYCG	1 cut(s)	263
BshFI	GGCC	5 cut(s)	66, 72, 143, 262, 827
BshNI	GGYRCC	2 cut(s)	123, 722
BsiEI	CGRYCG	1 cut(s)	263
BsiHKAI	GWGCWC	2 cut(s)	18, 108
BsiSI	CCGG	4 cut(s)	74, 101, 186, 263
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	8 cut(s)	73, 139, 163, 199, 274, 631, 653, 823
BsmAI	GTCTC	1 cut(s)	687
BsmFI	GGGAC	1 cut(s)	371
BsnI	GGCC	5 cut(s)	66, 72, 143, 262, 827
Bso31I	GGTCTC	1 cut(s)	687
Bsp1286I	GDGCHC	3 cut(s)	18, 108, 219
Bsp143I	GATC	1 cut(s)	519
BspACI	CCGC	2 cut(s)	470, 747
BspANI	GGCC	5 cut(s)	66, 72, 143, 262, 827
BspCNI	CTCAG	2 cut(s)	331, 535
BspLI	GGNNCC	3 cut(s)	125, 387, 724
BspPI	GGATC	1 cut(s)	514
BspT107I	GGYRCC	2 cut(s)	123, 722
BspTNI	GGTCTC	1 cut(s)	687
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	4 cut(s)	227, 598, 658, 674
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	7 cut(s)	67, 91, 138, 162, 463, 647, 726
BssMI	GATC	1 cut(s)	519
BssNI	GRCGYC	2 cut(s)	177, 723
BssT1I	CCWWGG	3 cut(s)	67, 647, 726
Bst2UI	CCWGG	4 cut(s)	140, 194, 390, 465
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	771
BstACI	GRCGYC	2 cut(s)	177, 723
BstBAI	YACGTR	1 cut(s)	52
BstC8I	GCNNGC	2 cut(s)	187, 296
BstDEI	CTNAG	2 cut(s)	318, 543
BstDSI	CCRYGG	2 cut(s)	91, 162
BstF5I	GGATG	2 cut(s)	502, 553
BstH2I	RGCGCY	3 cut(s)	170, 660, 726
BstHHI	GCGC	3 cut(s)	169, 659, 725
BstKTI	GATC	1 cut(s)	522
BstMAI	GTCTC	1 cut(s)	687
BstMBI	GATC	1 cut(s)	519
BstMCI	CGRYCG	1 cut(s)	263
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 410
BstNI	CCWGG	4 cut(s)	140, 194, 390, 465
BstNSI	RCATGY	1 cut(s)	49
BstSCI	CCNGG	6 cut(s)	72, 99, 138, 192, 388, 463
BstSLI	GKGCMC	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	334
BstZI	CGGCCG	1 cut(s)	260
BsuRI	GGCC	5 cut(s)	66, 72, 143, 262, 827
BtgI	CCRYGG	2 cut(s)	91, 162
BtsCI	GGATG	2 cut(s)	502, 553
BtsIMutI	CAGTG	2 cut(s)	591, 844
Cac8I	GCNNGC	2 cut(s)	187, 296
CaiI	CAGNNNCTG	1 cut(s)	139
CfoI	GCGC	3 cut(s)	169, 659, 725
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	4 cut(s)	71, 79, 265, 467
CpoI	CGGWCCG	1 cut(s)	265
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	112, 423
CspI	CGGWCCG	1 cut(s)	265
CviAII	CATG	4 cut(s)	46, 117, 235, 340
CviQI	GTAC	2 cut(s)	112, 423
DdeI	CTNAG	2 cut(s)	318, 543
DinI	GGCGCC	1 cut(s)	724
DpnI	GATC	1 cut(s)	521
DpnII	GATC	1 cut(s)	519
EaeI	YGGCCR	1 cut(s)	260
EagI	CGGCCG	1 cut(s)	260
Eam1104I	CTCTTC	1 cut(s)	771
EarI	CTCTTC	1 cut(s)	771
Ecl136II	GAGCTC	1 cut(s)	106
EclXI	CGGCCG	1 cut(s)	260
Eco130I	CCWWGG	3 cut(s)	67, 647, 726
Eco24I	GRGCYC	1 cut(s)	108
Eco31I	GGTCTC	1 cut(s)	687
Eco47I	GGWCC	3 cut(s)	79, 265, 467
Eco52I	CGGCCG	1 cut(s)	260
Eco53kI	GAGCTC	1 cut(s)	106
EcoICRI	GAGCTC	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	443
EcoRII	CCWGG	4 cut(s)	138, 192, 388, 463
EcoT14I	CCWWGG	3 cut(s)	67, 647, 726
EcoT38I	GRGCYC	1 cut(s)	108
EgeI	GGCGCC	1 cut(s)	724
EheI	GGCGCC	1 cut(s)	724
ErhI	CCWWGG	3 cut(s)	67, 647, 726
FaeI	CATG	4 cut(s)	49, 120, 238, 343
FalI	AAGNNNNNCTT	2 cut(s)	572, 604
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	4 cut(s)	45, 116, 234, 339
FauI	CCCGC	1 cut(s)	740
Fnu4HI	GCNGC	1 cut(s)	348
FokI	GGATG	2 cut(s)	489, 560
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	348
FspBI	CTAG	2 cut(s)	309, 704
GlaI	GCGC	3 cut(s)	168, 658, 724
GluI	GCNGC	1 cut(s)	348
GsuI	CTGGAG	1 cut(s)	411
HaeII	RGCGCY	3 cut(s)	170, 660, 726
HaeIII	GGCC	5 cut(s)	66, 72, 143, 262, 827
HapII	CCGG	4 cut(s)	74, 101, 186, 263
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	3 cut(s)	169, 659, 725
Hin1I	GRCGYC	2 cut(s)	177, 723
Hin1II	CATG	4 cut(s)	49, 120, 238, 343
Hin6I	GCGC	3 cut(s)	167, 657, 723
HinP1I	GCGC	3 cut(s)	167, 657, 723
HincII	GTYRAC	3 cut(s)	34, 286, 556
HindII	GTYRAC	3 cut(s)	34, 286, 556
HinfI	GANTC	2 cut(s)	270, 335
HpaI	GTTAAC	1 cut(s)	556
HpaII	CCGG	4 cut(s)	74, 101, 186, 263
Hpy166II	GTNNAC	5 cut(s)	34, 286, 491, 556, 842
Hpy188I	TCNGA	3 cut(s)	321, 519, 544
Hpy188III	TCNNGA	6 cut(s)	133, 383, 448, 754, 851, 862
Hpy8I	GTNNAC	5 cut(s)	34, 286, 491, 556, 842
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	3 cut(s)	193, 577, 788
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	2 cut(s)	51, 564
HpyCH4V	TGCA	5 cut(s)	49, 298, 375, 428, 644
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 410
HpyF3I	CTNAG	2 cut(s)	318, 543
HpySE526I	ACGT	2 cut(s)	51, 564
Hsp92I	GRCGYC	2 cut(s)	177, 723
Hsp92II	CATG	4 cut(s)	49, 120, 238, 343
HspAI	GCGC	3 cut(s)	167, 657, 723
KasI	GGCGCC	1 cut(s)	722
KroI	GCCGGC	1 cut(s)	185
KroNI	GCCGGC	1 cut(s)	187
KspAI	GTTAAC	1 cut(s)	556
Kzo9I	GATC	1 cut(s)	519
LmnI	GCTCC	3 cut(s)	103, 385, 520
Lsp1109I	GCAGC	1 cut(s)	334
LweI	GCATC	2 cut(s)	48, 502
MaeI	CTAG	2 cut(s)	309, 704
MaeII	ACGT	2 cut(s)	51, 564
MalI	GATC	1 cut(s)	521
MboI	GATC	1 cut(s)	519
MboII	GAAGA	2 cut(s)	592, 788
MhlI	GDGCHC	3 cut(s)	18, 108, 219
MluCI	AATT	7 cut(s)	299, 417, 443, 572, 628, 712, 866
Mly113I	GGCGCC	1 cut(s)	723
MlyI	GAGTC	1 cut(s)	279
MnlI	CCTC	6 cut(s)	98, 114, 327, 488, 538, 772
MreI	CGCCGGCG	1 cut(s)	185
MroNI	GCCGGC	1 cut(s)	185
MroXI	GAANNNNTTC	3 cut(s)	203, 587, 846
MseI	TTAA	2 cut(s)	555, 678
MslI	CAYNNNNRTG	1 cut(s)	44
MspI	CCGG	4 cut(s)	74, 101, 186, 263
MspR9I	CCNGG	6 cut(s)	74, 101, 140, 194, 390, 465
MvaI	CCWGG	4 cut(s)	140, 194, 390, 465
MwoI	GCNNNNNNNGC	2 cut(s)	236, 410
NaeI	GCCGGC	1 cut(s)	187
NarI	GGCGCC	1 cut(s)	723
NciI	CCSGG	2 cut(s)	74, 101
NdeII	GATC	1 cut(s)	519
NgoMIV	GCCGGC	1 cut(s)	185
NlaIII	CATG	4 cut(s)	49, 120, 238, 343
NlaIV	GGNNCC	3 cut(s)	125, 387, 724
NmeAIII	GCCGAG	3 cut(s)	82, 129, 430
NspI	RCATGY	1 cut(s)	49
PcsI	WCGNNNNNNNCGW	1 cut(s)	265
PdiI	GCCGGC	1 cut(s)	187
PdmI	GAANNNNTTC	3 cut(s)	203, 587, 846
PfeI	GAWTC	1 cut(s)	335
PflFI	GACNNNGTC	2 cut(s)	179, 269
PflMI	CCANNNNNTGG	1 cut(s)	139
PfoI	TCCNGGA	1 cut(s)	99
PkrI	GCNGC	1 cut(s)	349
PleI	GAGTC	1 cut(s)	278
PluTI	GGCGCC	1 cut(s)	726
PpsI	GAGTC	1 cut(s)	278
Ppu21I	YACGTR	1 cut(s)	52
PsiI	TTATAA	2 cut(s)	711, 810
Psp124BI	GAGCTC	1 cut(s)	108
Psp6I	CCWGG	4 cut(s)	138, 192, 388, 463
PspGI	CCWGG	4 cut(s)	138, 192, 388, 463
PspN4I	GGNNCC	3 cut(s)	125, 387, 724
PspPI	GGNCC	4 cut(s)	71, 79, 265, 467
PstNI	CAGNNNCTG	1 cut(s)	139
PsyI	GACNNNGTC	2 cut(s)	179, 269
RsaI	GTAC	2 cut(s)	113, 424
RsaNI	GTAC	2 cut(s)	112, 423
RseI	CAYNNNNRTG	1 cut(s)	44
Rsr2I	CGGWCCG	1 cut(s)	265
RsrII	CGGWCCG	1 cut(s)	265
SacI	GAGCTC	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	555, 678
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	1 cut(s)	519
Sau96I	GGNCC	4 cut(s)	71, 79, 265, 467
SchI	GAGTC	1 cut(s)	279
ScrFI	CCNGG	6 cut(s)	74, 101, 140, 194, 390, 465
SduI	GDGCHC	3 cut(s)	18, 108, 219
SfaNI	GCATC	2 cut(s)	48, 502
SfoI	GGCGCC	1 cut(s)	724
SgrAI	CRCCGGYG	1 cut(s)	185
SinI	GGWCC	3 cut(s)	79, 265, 467
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	2 cut(s)	289, 660
SmoI	CTYRAG	2 cut(s)	289, 660
Sse9I	AATT	7 cut(s)	299, 417, 443, 572, 628, 712, 866
SsiI	CCGC	2 cut(s)	470, 747
SspDI	GGCGCC	1 cut(s)	722
SspMI	CTAG	2 cut(s)	309, 704
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	6 cut(s)	72, 99, 138, 192, 388, 463
StyI	CCWWGG	3 cut(s)	67, 647, 726
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	2 cut(s)	54, 567
TaqI	TCGA	1 cut(s)	870
TaqII	GACCGA	2 cut(s)	282, 639
TasI	AATT	7 cut(s)	299, 417, 443, 572, 628, 712, 866
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	2 cut(s)	555, 678
Tru9I	TTAA	2 cut(s)	555, 678
TscAI	CASTG	2 cut(s)	598, 844
TseI	GCWGC	1 cut(s)	347
TspDTI	ATGAA	7 cut(s)	292, 338, 356, 673, 724, 846, 847
TspRI	CASTG	2 cut(s)	598, 844
Tth111I	GACNNNGTC	2 cut(s)	179, 269
Van91I	CCANNNNNTGG	1 cut(s)	139
VpaK11BI	GGWCC	3 cut(s)	79, 265, 467
XapI	RAATTY	3 cut(s)	443, 572, 866
XceI	RCATGY	1 cut(s)	49
XmnI	GAANNNNTTC	3 cut(s)	203, 587, 846
XspI	CTAG	2 cut(s)	309, 704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.