Rorug04G0266800

Protein of unknown function (DUF1336)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
43923403 .. 43939974
16572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0266800.1

Sequence Viewer

Length: 963 bp
ATGGACGGAGTAGAGCACAGAACGATCAAAGTCAACGGCATCAACATGCACGTAGCCGAGAAAGGCCAAGGCCCGGTTGTCCTATTCCTCCACGGCTTCCCGGAGCTATGGTACTCATGGCGGCAACAAATCCAGACCCTGGCCTCGCTCGGCTACCGAGCCGTGGCGCCGGACCTCCGTGGCTTCGGCGACACCGACGCGCCGGCCGACTCGTCGAGCTACACTTGCTTACACGTGGTGGGAGATCTCGTGGAGCTATTGGACGCCGTCGCCGCCGACCAGGAGAAGGTGTTCGTTGTCGGGCACGACTGGGGGGCAGTCATGGCTTGGTATCTTTGCCTGTTTCGGCCGGACCGAGTCAAGGCTCTGGTCAGCTTGAGCGTGCAATTTTTTCCTAGAAATCCTCGGAGCAAGACTATTGAATCCATGAAAGCTGCTTATGGGGACGACTATTATATTTGCAGATTTCAGGAGCCTGGAGAGATAGAAGCCGAGTTCGCCCAAATTGGTACTGCAAGAGTTATTAGGGAATTCTTGACCTTTCGCCACCCTGGTCCGCTTTTCCTCCCTAAAGGTAAACTCTTTGGACATCCCCCAGATGCTCCGATCCCCTTGCCAAGTTGGTTGTCTGAGGATGATGTTAACTACTACGTCAGCAAATTTGAGAAGAAGGGCTTCACTGGTGGCTTAAACTACTACCGAAACCTTGACCGAAATTGGGAACTCCTTGCACCCTGGACTGGCGCTCAAGTGAAAGTTCCAGTTAAGTTCATTGTGGGAGACCAAGACCTAGTTTATAATTCTCTTGGCGCCAAGGATTTCATACACAATGGCGGGTTCAAGAAATATGTGCCGTTCTTGGAAGAGGTTGTTGTAATGGAAGGAGTTGCCCATTTTAACAATCAAGAAAAGGCCGATGAAATCAGTGAACACATTCACGACTTCATCAAGAAATTCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

320

Amino Acids

36.27

Weight (kDa)

5.68

Isoelectric Point (pI)

30.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chlorophyllase PF07224 19 - 115 4.3e-08 Chlorophyllase
Abhydrolase_1 PF00561 25 - 133 3.3e-25 alpha/beta hydrolase fold
Hydrolase_4 PF12146 26 - 135 3.2e-12 Serine aminopeptidase, S33
Abhydrolase_6 PF12697 27 - 309 2.6e-19 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 798
AccB1I GGYRCC 2 cut(s) 166, 809
AccB7I CCANNNNNTGG 1 cut(s) 139
AccII CGCG 1 cut(s) 200
AciI CCGC 4 cut(s) 121, 273, 557, 834
AclWI GGATC 1 cut(s) 601
AcoI YGGCCR 2 cut(s) 204, 347
AcsI RAATTY 3 cut(s) 530, 659, 953
AcvI CACGTG 1 cut(s) 235
AcyI GRCGYC 3 cut(s) 167, 264, 810
AdeI CACNNNGTG 1 cut(s) 238
AfaI GTAC 2 cut(s) 113, 511
AfiI CCNNNNNNNGG 7 cut(s) 73, 139, 163, 286, 361, 718, 740
AflIII ACRYGT 1 cut(s) 232
AgsI TTSAA 2 cut(s) 422, 841
AjnI CCWGG 5 cut(s) 138, 279, 475, 550, 734
AloI GAACNNNNNNTCC 2 cut(s) 275, 307
AluBI AGCT 5 cut(s) 106, 219, 256, 375, 434
AluI AGCT 5 cut(s) 106, 219, 256, 375, 434
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 1 cut(s) 774
AlwI GGATC 1 cut(s) 601
AlwNI CAGNNNCTG 1 cut(s) 139
AoxI GGCC 6 cut(s) 64, 70, 141, 204, 347, 912
ApeKI GCWGC 1 cut(s) 434
ApoI RAATTY 3 cut(s) 530, 659, 953
Asp700I GAANNNNTTC 3 cut(s) 290, 674, 933
AspLEI GCGC 4 cut(s) 169, 202, 746, 812
AspS9I GGNCC 4 cut(s) 71, 172, 352, 554
AsuC2I CCSGG 2 cut(s) 74, 101
AvaII GGWCC 3 cut(s) 172, 352, 554
BaeGI GKGCMC 1 cut(s) 306
BanI GGYRCC 2 cut(s) 166, 809
BauI CACGAG 1 cut(s) 248
BbrPI CACGTG 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 421
BceAI ACGGC 5 cut(s) 52, 109, 146, 251, 838
BcgI CGANNNNNNTGC 2 cut(s) 595, 629
BciT130I CCWGG 5 cut(s) 140, 281, 477, 552, 736
BcnI CCSGG 2 cut(s) 74, 101
BcoDI GTCTC 1 cut(s) 774
BfaI CTAG 2 cut(s) 396, 791
BfoI RGCGCY 3 cut(s) 170, 747, 813
BglII AGATCT 1 cut(s) 244
BisI GCNGC 3 cut(s) 122, 273, 435
BlsI GCNGC 3 cut(s) 123, 274, 436
Bme1390I CCNGG 7 cut(s) 74, 101, 140, 281, 477, 552, 736
Bme18I GGWCC 3 cut(s) 172, 352, 554
BmgT120I GGNCC 4 cut(s) 71, 172, 352, 554
BmiI GGNNCC 3 cut(s) 168, 474, 811
BmrFI CCNGG 7 cut(s) 74, 101, 140, 281, 477, 552, 736
BmrI ACTGGG 1 cut(s) 319
BmsI GCATC 2 cut(s) 48, 589
BmuI ACTGGG 1 cut(s) 319
BpmI CTGGAG 1 cut(s) 498
BpuEI CTTGAG 2 cut(s) 397, 732
BpuMI CCSGG 2 cut(s) 74, 101
BsaAI YACGTR 2 cut(s) 52, 235
BsaHI GRCGYC 3 cut(s) 167, 264, 810
BsaI GGTCTC 1 cut(s) 774
BsaJI CCNNGG 9 cut(s) 67, 91, 138, 162, 178, 404, 550, 734, 813
BsaXI ACNNNNNCTCC 6 cut(s) 95, 125, 234, 264, 275, 305
Bsc4I CCNNNNNNNGG 7 cut(s) 73, 139, 163, 286, 361, 718, 740
Bse118I RCCGGY 1 cut(s) 202
Bse1I ACTGG 4 cut(s) 314, 685, 745, 761
BseBI CCWGG 5 cut(s) 140, 281, 477, 552, 736
BseDI CCNNGG 9 cut(s) 67, 91, 138, 162, 178, 404, 550, 734, 813
BseGI GGATG 2 cut(s) 589, 640
BseLI CCNNNNNNNGG 7 cut(s) 73, 139, 163, 286, 361, 718, 740
BseMII CTCAG 1 cut(s) 621
BseNI ACTGG 4 cut(s) 314, 685, 745, 761
BseSI GKGCMC 1 cut(s) 306
BseX3I CGGCCG 2 cut(s) 204, 347
BseXI GCAGC 1 cut(s) 421
Bsh1236I CGCG 1 cut(s) 200
Bsh1285I CGRYCG 2 cut(s) 207, 350
BshFI GGCC 6 cut(s) 66, 72, 143, 206, 349, 914
BshNI GGYRCC 2 cut(s) 166, 809
BsiEI CGRYCG 2 cut(s) 207, 350
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 5 cut(s) 74, 101, 170, 203, 350
BslFI GGGAC 1 cut(s) 458
BslI CCNNNNNNNGG 7 cut(s) 73, 139, 163, 286, 361, 718, 740
BsmAI GTCTC 1 cut(s) 774
BsmFI GGGAC 1 cut(s) 458
BsnI GGCC 6 cut(s) 66, 72, 143, 206, 349, 914
Bso31I GGTCTC 1 cut(s) 774
Bsp1286I GDGCHC 2 cut(s) 18, 306
Bsp143I GATC 3 cut(s) 24, 244, 606
BspACI CCGC 4 cut(s) 121, 273, 557, 834
BspANI GGCC 6 cut(s) 66, 72, 143, 206, 349, 914
BspCNI CTCAG 1 cut(s) 622
BspFNI CGCG 1 cut(s) 200
BspLI GGNNCC 3 cut(s) 168, 474, 811
BspPI GGATC 1 cut(s) 601
BspT107I GGYRCC 2 cut(s) 166, 809
BspTNI GGTCTC 1 cut(s) 774
BsrFI RCCGGY 1 cut(s) 202
BsrI ACTGG 4 cut(s) 314, 685, 745, 761
BssAI RCCGGY 1 cut(s) 202
BssECI CCNNGG 9 cut(s) 67, 91, 138, 162, 178, 404, 550, 734, 813
BssMI GATC 3 cut(s) 24, 244, 606
BssNI GRCGYC 3 cut(s) 167, 264, 810
BssSI CACGAG 1 cut(s) 248
BssT1I CCWWGG 2 cut(s) 67, 813
Bst2BI CACGAG 1 cut(s) 248
Bst2UI CCWGG 5 cut(s) 140, 281, 477, 552, 736
Bst6I CTCTTC 1 cut(s) 858
BstACI GRCGYC 3 cut(s) 167, 264, 810
BstBAI YACGTR 2 cut(s) 52, 235
BstC8I GCNNGC 2 cut(s) 204, 383
BstDEI CTNAG 1 cut(s) 630
BstDSI CCRYGG 3 cut(s) 91, 162, 178
BstF5I GGATG 2 cut(s) 589, 640
BstFNI CGCG 1 cut(s) 200
BstH2I RGCGCY 3 cut(s) 170, 747, 813
BstHHI GCGC 4 cut(s) 169, 202, 746, 812
BstKTI GATC 3 cut(s) 27, 247, 609
BstMAI GTCTC 1 cut(s) 774
BstMBI GATC 3 cut(s) 24, 244, 606
BstMCI CGRYCG 2 cut(s) 207, 350
BstMWI GCNNNNNNNGC 4 cut(s) 225, 272, 323, 497
BstNI CCWGG 5 cut(s) 140, 281, 477, 552, 736
BstNSI RCATGY 1 cut(s) 49
BstSCI CCNGG 7 cut(s) 72, 99, 138, 279, 475, 550, 734
BstSLI GKGCMC 1 cut(s) 306
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 1 cut(s) 421
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BstZI CGGCCG 2 cut(s) 204, 347
BsuRI GGCC 6 cut(s) 66, 72, 143, 206, 349, 914
BtgI CCRYGG 3 cut(s) 91, 162, 178
BtsCI GGATG 2 cut(s) 589, 640
BtsIMutI CAGTG 2 cut(s) 678, 931
Cac8I GCNNGC 2 cut(s) 204, 383
CaiI CAGNNNCTG 1 cut(s) 139
CfoI GCGC 4 cut(s) 169, 202, 746, 812
Cfr10I RCCGGY 1 cut(s) 202
Cfr13I GGNCC 4 cut(s) 71, 172, 352, 554
CpoI CGGWCCG 1 cut(s) 352
CseI GACGC 2 cut(s) 206, 272
Csp6I GTAC 2 cut(s) 112, 510
CspI CGGWCCG 1 cut(s) 352
CviAII CATG 4 cut(s) 46, 117, 322, 427
CviQI GTAC 2 cut(s) 112, 510
DdeI CTNAG 1 cut(s) 630
DinI GGCGCC 2 cut(s) 168, 811
DpnI GATC 3 cut(s) 26, 246, 608
DpnII GATC 3 cut(s) 24, 244, 606
DraIII CACNNNGTG 1 cut(s) 238
EaeI YGGCCR 2 cut(s) 204, 347
EagI CGGCCG 2 cut(s) 204, 347
Eam1104I CTCTTC 1 cut(s) 858
EarI CTCTTC 1 cut(s) 858
EclXI CGGCCG 2 cut(s) 204, 347
Eco130I CCWWGG 2 cut(s) 67, 813
Eco31I GGTCTC 1 cut(s) 774
Eco47I GGWCC 3 cut(s) 172, 352, 554
Eco52I CGGCCG 2 cut(s) 204, 347
Eco72I CACGTG 1 cut(s) 235
EcoRI GAATTC 1 cut(s) 530
EcoRII CCWGG 5 cut(s) 138, 279, 475, 550, 734
EcoT14I CCWWGG 2 cut(s) 67, 813
EgeI GGCGCC 2 cut(s) 168, 811
EheI GGCGCC 2 cut(s) 168, 811
ErhI CCWWGG 2 cut(s) 67, 813
FaeI CATG 4 cut(s) 49, 120, 325, 430
FalI AAGNNNNNCTT 2 cut(s) 659, 691
FaqI GGGAC 1 cut(s) 458
FatI CATG 4 cut(s) 45, 116, 321, 426
FauI CCCGC 1 cut(s) 827
Fnu4HI GCNGC 3 cut(s) 122, 273, 435
FokI GGATG 2 cut(s) 576, 647
Fsp4HI GCNGC 3 cut(s) 122, 273, 435
FspBI CTAG 2 cut(s) 396, 791
GlaI GCGC 4 cut(s) 168, 201, 745, 811
GluI GCNGC 3 cut(s) 122, 273, 435
GsuI CTGGAG 1 cut(s) 498
HaeII RGCGCY 3 cut(s) 170, 747, 813
HaeIII GGCC 6 cut(s) 66, 72, 143, 206, 349, 914
HapII CCGG 5 cut(s) 74, 101, 170, 203, 350
HgaI GACGC 2 cut(s) 206, 272
HhaI GCGC 4 cut(s) 169, 202, 746, 812
Hin1I GRCGYC 3 cut(s) 167, 264, 810
Hin1II CATG 4 cut(s) 49, 120, 325, 430
Hin6I GCGC 4 cut(s) 167, 200, 744, 810
HinP1I GCGC 4 cut(s) 167, 200, 744, 810
HincII GTYRAC 2 cut(s) 34, 643
HindII GTYRAC 2 cut(s) 34, 643
HinfI GANTC 3 cut(s) 209, 357, 422
HpaI GTTAAC 1 cut(s) 643
HpaII CCGG 5 cut(s) 74, 101, 170, 203, 350
Hpy166II GTNNAC 4 cut(s) 34, 578, 643, 929
Hpy188I TCNGA 3 cut(s) 408, 606, 631
Hpy188III TCNNGA 7 cut(s) 133, 470, 535, 841, 905, 938, 949
Hpy8I GTNNAC 4 cut(s) 34, 578, 643, 929
Hpy99I CGWCG 3 cut(s) 200, 217, 272
HpyAV CCTTC 3 cut(s) 280, 664, 875
HpyCH4IV ACGT 3 cut(s) 51, 234, 651
HpyCH4V TGCA 5 cut(s) 49, 385, 462, 515, 731
HpyF10VI GCNNNNNNNGC 4 cut(s) 225, 272, 323, 497
HpyF3I CTNAG 1 cut(s) 630
HpySE526I ACGT 3 cut(s) 51, 234, 651
Hsp92I GRCGYC 3 cut(s) 167, 264, 810
Hsp92II CATG 4 cut(s) 49, 120, 325, 430
HspAI GCGC 4 cut(s) 167, 200, 744, 810
KasI GGCGCC 2 cut(s) 166, 809
KroI GCCGGC 1 cut(s) 202
KroNI GCCGGC 1 cut(s) 204
KspAI GTTAAC 1 cut(s) 643
Kzo9I GATC 3 cut(s) 24, 244, 606
LmnI GCTCC 5 cut(s) 103, 253, 408, 472, 607
Lsp1109I GCAGC 1 cut(s) 421
LweI GCATC 2 cut(s) 48, 589
MaeI CTAG 2 cut(s) 396, 791
MaeII ACGT 3 cut(s) 51, 234, 651
MalI GATC 3 cut(s) 26, 246, 608
MboI GATC 3 cut(s) 24, 244, 606
MboII GAAGA 2 cut(s) 679, 875
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 2 cut(s) 18, 306
MluCI AATT 7 cut(s) 386, 504, 530, 659, 715, 799, 953
Mly113I GGCGCC 2 cut(s) 167, 810
MlyI GAGTC 2 cut(s) 203, 366
MnlI CCTC 7 cut(s) 98, 154, 185, 414, 575, 625, 859
MroNI GCCGGC 1 cut(s) 202
MroXI GAANNNNTTC 3 cut(s) 290, 674, 933
MseI TTAA 4 cut(s) 642, 689, 765, 897
MslI CAYNNNNRTG 1 cut(s) 44
MspI CCGG 5 cut(s) 74, 101, 170, 203, 350
MspR9I CCNGG 7 cut(s) 74, 101, 140, 281, 477, 552, 736
MvaI CCWGG 5 cut(s) 140, 281, 477, 552, 736
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 4 cut(s) 225, 272, 323, 497
NaeI GCCGGC 1 cut(s) 204
NarI GGCGCC 2 cut(s) 167, 810
NciI CCSGG 2 cut(s) 74, 101
NdeII GATC 3 cut(s) 24, 244, 606
NgoMIV GCCGGC 1 cut(s) 202
NlaIII CATG 4 cut(s) 49, 120, 325, 430
NlaIV GGNNCC 3 cut(s) 168, 474, 811
NmeAIII GCCGAG 3 cut(s) 82, 129, 517
NspI RCATGY 1 cut(s) 49
PcsI WCGNNNNNNNCGW 3 cut(s) 192, 204, 352
PdiI GCCGGC 1 cut(s) 204
PdmI GAANNNNTTC 3 cut(s) 290, 674, 933
PfeI GAWTC 1 cut(s) 422
PflFI GACNNNGTC 2 cut(s) 266, 356
PflMI CCANNNNNTGG 1 cut(s) 139
PfoI TCCNGGA 1 cut(s) 99
PkrI GCNGC 3 cut(s) 123, 274, 436
PleI GAGTC 2 cut(s) 203, 365
PluTI GGCGCC 2 cut(s) 170, 813
PmaCI CACGTG 1 cut(s) 235
PmlI CACGTG 1 cut(s) 235
PpsI GAGTC 2 cut(s) 203, 365
Ppu21I YACGTR 2 cut(s) 52, 235
PsiI TTATAA 1 cut(s) 798
Psp6I CCWGG 5 cut(s) 138, 279, 475, 550, 734
PspCI CACGTG 1 cut(s) 235
PspGI CCWGG 5 cut(s) 138, 279, 475, 550, 734
PspN4I GGNNCC 3 cut(s) 168, 474, 811
PspPI GGNCC 4 cut(s) 71, 172, 352, 554
PstNI CAGNNNCTG 1 cut(s) 139
PsuI RGATCY 1 cut(s) 244
PsyI GACNNNGTC 2 cut(s) 266, 356
RsaI GTAC 2 cut(s) 113, 511
RsaNI GTAC 2 cut(s) 112, 510
RseI CAYNNNNRTG 1 cut(s) 44
Rsr2I CGGWCCG 1 cut(s) 352
RsrII CGGWCCG 1 cut(s) 352
SaqAI TTAA 4 cut(s) 642, 689, 765, 897
SatI GCNGC 3 cut(s) 122, 273, 435
Sau3AI GATC 3 cut(s) 24, 244, 606
Sau96I GGNCC 4 cut(s) 71, 172, 352, 554
SchI GAGTC 2 cut(s) 203, 366
ScrFI CCNGG 7 cut(s) 74, 101, 140, 281, 477, 552, 736
SduI GDGCHC 2 cut(s) 18, 306
SfaNI GCATC 2 cut(s) 48, 589
SfoI GGCGCC 2 cut(s) 168, 811
SinI GGWCC 3 cut(s) 172, 352, 554
SmiMI CAYNNNNRTG 1 cut(s) 44
SmlI CTYRAG 2 cut(s) 376, 747
SmoI CTYRAG 2 cut(s) 376, 747
Sse9I AATT 7 cut(s) 386, 504, 530, 659, 715, 799, 953
SsiI CCGC 4 cut(s) 121, 273, 557, 834
SspDI GGCGCC 2 cut(s) 166, 809
SspMI CTAG 2 cut(s) 396, 791
StyD4I CCNGG 7 cut(s) 72, 99, 138, 279, 475, 550, 734
StyI CCWWGG 2 cut(s) 67, 813
TaiI ACGT 3 cut(s) 54, 237, 654
TaqI TCGA 2 cut(s) 215, 957
TaqII GACCGA 2 cut(s) 369, 726
TasI AATT 7 cut(s) 386, 504, 530, 659, 715, 799, 953
TauI GCSGC 2 cut(s) 124, 275
TfiI GAWTC 1 cut(s) 422
Tru1I TTAA 4 cut(s) 642, 689, 765, 897
Tru9I TTAA 4 cut(s) 642, 689, 765, 897
TscAI CASTG 2 cut(s) 685, 931
TseI GCWGC 1 cut(s) 434
TspDTI ATGAA 5 cut(s) 443, 760, 811, 933, 934
TspGWI ACGGA 2 cut(s) 21, 167
TspRI CASTG 2 cut(s) 685, 931
Tth111I GACNNNGTC 2 cut(s) 266, 356
Van91I CCANNNNNTGG 1 cut(s) 139
VpaK11BI GGWCC 3 cut(s) 172, 352, 554
XapI RAATTY 3 cut(s) 530, 659, 953
XceI RCATGY 1 cut(s) 49
XmnI GAANNNNTTC 3 cut(s) 290, 674, 933
XspI CTAG 2 cut(s) 396, 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.