Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000957.1

Orthogroup ID

OG0002719

Physical Location & Seq

Genomic Coordinates Forward (+)

40066 .. 44972

Gene Structure 4907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000957.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atggaatctgattcagatgttgattttgctagtgtacatggaggtgacgtactcaaatctcaattttccaatactttgtgggttaaattgcgagtgttagctcgtgatcttgacactactatagttctttgttttttcgggtttgtcagatgggtttcctcctatggtagtgcttctaatcagaagtacttattccgtcctaaagcaggactacgcattccttgttcagcggtagagaagccaactccaggatcctggtctgaaatctcgccttcagtctttaagctccgcggggagaactatttcaaagacaaacagaagtaccctgctccaaactacagctcatatgtaccaattggtattgatttgtttatctgcccaaggaagagagatcacattgctcagcatcttgagcttccttctgtagaaccacatgacaaagttccttccctccttattgttaatatacagtttcctacatatcctattacaatgttccctagtgaatgtgatggtgaaggcatgagtcttgtattatactttaaagtcggtgaaaattttgacaaagacatctctcctcagtttcaagaattcatcaagagatttgttgaggatgataccgaaatggttaaggggttcacaaaggagtcgtcggttcctttcagggaaaggctaaaaattatggctggatttgttaatccagacgaggtccaactgagttctgctgagaagaagcttttaagtgcttataatgataaaccggtgctttcgcgccctcaacacaatttcttcaggggacctaattattttgagattgacctagacatacacacgttcagctacatctccaggaaagggcttgaatcatcccgagacagattgaagaatggggtatttaatttgggattaacaatccagcaggaagaggggagcaagactgagcacttacaggtgcagaggtgccgggcgaggttttgtagatcggcttaccctccagccattggcgtaggcggtgtcgcaatattatctaaggtgatagtggatccggtatccatagattttcagatcaaggaagaaatggtgacgatgagggaggggaaggaagcaattatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1336

Protein Analysis

371

Amino Acids

42.16

Weight (kDa)

7.05

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13970
fragaria_vesca	FvH4_4g30650 FvH4_4g30650 FvH4_4g30650 FvH4_4g30650
malus_domestica	MD13G1067700.v1.1 MD16G1066600.v1.1
prunus_persica	Prupe.1G280600_v2.0.a1 Prupe.1G280600_v2.0.a1 Prupe.1G280600_v2.0.a1 Prupe.1G280600_v2.0.a1
pyrus_communis	pycom13g05950 pycom16g05800
rosa_chinensis	RchiOBHm_Chr4g0433211 RchiOBHm_Chr4g0439051 RchiOBHm_Chr7g0234381
rosa_laevigata	RLG00000006306 RLG00000006774
rosa_multiflora	Rmu_sc0000957.1_g000008 Rmu_sc0001338.1_g000003
rosa_roxburghii	Rroxscaffold_5G00374750 Rroxscaffold_5G00380050
rosa_rugosa	Rorug04G0266600 Rorug04G0266700 Rorug04G0266800 Rorug04G0266900 Rorug04G0315200
rosa_samantha	Rh4AG321500 Rh4AG366000 Rh4BG328600 Rh4BG377300 Rh4CG344000 Rh4CG391400 Rh4DG325300 Rh4DG372000 Rh7CG461000
rosa_wichuraiana	Rw0G007430 Rw0G016980 Rw4G027840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	750
AccB1I	GGYRCC	1 cut(s)	960
AccB7I	CCANNNNNTGG	1 cut(s)	1001
AccII	CGCG	2 cut(s)	291, 772
AciI	CCGC	4 cut(s)	230, 289, 291, 1011
AclWI	GGATC	4 cut(s)	246, 259, 1037, 1050
AcsI	RAATTY	2 cut(s)	556, 590
AcuI	CTGAAG	2 cut(s)	258, 775
AfaI	GTAC	5 cut(s)	36, 51, 188, 323, 351
AfiI	CCNNNNNNNGG	4 cut(s)	206, 248, 855, 1001
AflIII	ACRYGT	1 cut(s)	831
AgeI	ACCGGT	1 cut(s)	760
AgsI	TTSAA	4 cut(s)	307, 587, 863, 883
AjnI	CCWGG	3 cut(s)	247, 254, 848
AluBI	AGCT	6 cut(s)	101, 286, 342, 415, 736, 840
AluI	AGCT	6 cut(s)	101, 286, 342, 415, 736, 840
Alw21I	GWGCWC	1 cut(s)	945
Alw26I	GTCTC	1 cut(s)	867
AlwI	GGATC	4 cut(s)	246, 259, 1037, 1050
Ama87I	CYCGRG	1 cut(s)	870
ApoI	RAATTY	2 cut(s)	556, 590
ArsI	GACNNNNNNTTYG	2 cut(s)	635, 667
AsiGI	ACCGGT	1 cut(s)	760
Asp700I	GAANNNNTTC	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	774
AspS9I	GGNCC	2 cut(s)	709, 797
AsuC2I	CCSGG	1 cut(s)	965
AsuHPI	GGTGA	5 cut(s)	56, 527, 563, 1045, 1093
AvaI	CYCGRG	1 cut(s)	870
AvaII	GGWCC	2 cut(s)	709, 797
BaeI	ACNNNNGTAYC	2 cut(s)	305, 338
BamHI	GGATCC	2 cut(s)	251, 1042
BanI	GGYRCC	1 cut(s)	960
BauI	CACGAG	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	945
BccI	CCATC	2 cut(s)	144, 506
BciT130I	CCWGG	3 cut(s)	249, 256, 850
BciVI	GTATCC	1 cut(s)	1060
BcnI	CCSGG	1 cut(s)	965
BcoDI	GTCTC	1 cut(s)	867
BfaI	CTAG	3 cut(s)	30, 501, 821
BfmI	CTRYAG	3 cut(s)	120, 337, 423
BfuI	GTATCC	1 cut(s)	1060
BlpI	GCTNAGC	1 cut(s)	402
BmcAI	AGTACT	1 cut(s)	188
Bme1390I	CCNGG	4 cut(s)	249, 256, 850, 965
Bme18I	GGWCC	2 cut(s)	709, 797
BmeT110I	CYCGRG	1 cut(s)	870
BmgT120I	GGNCC	2 cut(s)	709, 797
BmiI	GGNNCC	5 cut(s)	253, 657, 798, 962, 1044
BmrFI	CCNGG	4 cut(s)	249, 256, 850, 965
BmsI	GCATC	1 cut(s)	415
BpmI	CTGGAG	3 cut(s)	231, 832, 978
Bpu1102I	GCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	965
BsaJI	CCNNGG	2 cut(s)	289, 380
BsaWI	WCCGGW	2 cut(s)	760, 1045
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 248, 855, 1001
Bse118I	RCCGGY	1 cut(s)	760
Bse3DI	GCAATG	1 cut(s)	396
BseBI	CCWGG	3 cut(s)	249, 256, 850
BseDI	CCNNGG	2 cut(s)	289, 380
BseGI	GGATG	2 cut(s)	619, 866
BseLI	CCNNNNNNNGG	4 cut(s)	206, 248, 855, 1001
BseMI	GCAATG	1 cut(s)	396
BseMII	CTCAG	5 cut(s)	416, 593, 707, 717, 930
BseRI	GAGGAG	1 cut(s)	567
BsgI	GTGCAG	1 cut(s)	974
Bsh1236I	CGCG	2 cut(s)	291, 772
BshNI	GGYRCC	1 cut(s)	960
BshTI	ACCGGT	1 cut(s)	760
BsiHKAI	GWGCWC	1 cut(s)	945
BsiHKCI	CYCGRG	1 cut(s)	870
BsiSI	CCGG	3 cut(s)	761, 964, 1046
BslFI	GGGAC	1 cut(s)	810
BslI	CCNNNNNNNGG	4 cut(s)	206, 248, 855, 1001
BsmAI	GTCTC	1 cut(s)	867
BsmFI	GGGAC	1 cut(s)	810
BsmI	GAATGC	1 cut(s)	216
BsoBI	CYCGRG	1 cut(s)	870
Bsp1286I	GDGCHC	1 cut(s)	945
Bsp1407I	TGTACA	1 cut(s)	34
Bsp143I	GATC	6 cut(s)	106, 251, 391, 980, 1042, 1065
Bsp1720I	GCTNAGC	1 cut(s)	402
BspACI	CCGC	4 cut(s)	230, 289, 291, 1011
BspCNI	CTCAG	5 cut(s)	415, 592, 708, 718, 931
BspFNI	CGCG	2 cut(s)	291, 772
BspLI	GGNNCC	5 cut(s)	253, 657, 798, 962, 1044
BspPI	GGATC	4 cut(s)	246, 259, 1037, 1050
BspT107I	GGYRCC	1 cut(s)	960
BsrDI	GCAATG	1 cut(s)	396
BsrFI	RCCGGY	1 cut(s)	760
BsrGI	TGTACA	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	760
BssECI	CCNNGG	2 cut(s)	289, 380
BssMI	GATC	6 cut(s)	106, 251, 391, 980, 1042, 1065
BssSI	CACGAG	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	380
Bst2BI	CACGAG	1 cut(s)	102
Bst2UI	CCWGG	3 cut(s)	249, 256, 850
Bst4CI	ACNGT	1 cut(s)	471
Bst6I	CTCTTC	2 cut(s)	380, 918
BstAUI	TGTACA	1 cut(s)	34
BstDEI	CTNAG	6 cut(s)	402, 579, 716, 726, 939, 1029
BstDSI	CCRYGG	1 cut(s)	289
BstENI	CCTNNNNNAGG	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	619, 866
BstFNI	CGCG	2 cut(s)	291, 772
BstHHI	GCGC	1 cut(s)	774
BstKTI	GATC	6 cut(s)	109, 254, 394, 983, 1045, 1068
BstMAI	GTCTC	1 cut(s)	867
BstMBI	GATC	6 cut(s)	106, 251, 391, 980, 1042, 1065
BstMWI	GCNNNNNNNGC	1 cut(s)	412
BstNI	CCWGG	3 cut(s)	249, 256, 850
BstSCI	CCNGG	4 cut(s)	247, 254, 848, 963
BstSFI	CTRYAG	3 cut(s)	120, 337, 423
BstUI	CGCG	2 cut(s)	291, 772
BstX2I	RGATCY	2 cut(s)	251, 1042
BstXI	CCANNNNNNTGG	1 cut(s)	255
BstYI	RGATCY	2 cut(s)	251, 1042
BsuI	GTATCC	1 cut(s)	1060
BtgI	CCRYGG	1 cut(s)	289
BtsCI	GGATG	2 cut(s)	619, 866
CfoI	GCGC	1 cut(s)	774
Cfr10I	RCCGGY	1 cut(s)	760
Cfr13I	GGNCC	2 cut(s)	709, 797
Cfr42I	CCGCGG	1 cut(s)	292
Csp6I	GTAC	5 cut(s)	35, 50, 187, 322, 350
CspAI	ACCGGT	1 cut(s)	760
CviAII	CATG	3 cut(s)	38, 434, 523
CviQI	GTAC	5 cut(s)	35, 50, 187, 322, 350
DdeI	CTNAG	6 cut(s)	402, 579, 716, 726, 939, 1029
DpnI	GATC	6 cut(s)	108, 253, 393, 982, 1044, 1067
DpnII	GATC	6 cut(s)	106, 251, 391, 980, 1042, 1065
DraI	TTTAAA	1 cut(s)	544
Eam1104I	CTCTTC	2 cut(s)	380, 918
EarI	CTCTTC	2 cut(s)	380, 918
Eco130I	CCWWGG	1 cut(s)	380
Eco47I	GGWCC	2 cut(s)	709, 797
Eco57I	CTGAAG	2 cut(s)	258, 775
Eco88I	CYCGRG	1 cut(s)	870
EcoNI	CCTNNNNNAGG	1 cut(s)	204
EcoO109I	RGGNCCY	1 cut(s)	797
EcoRI	GAATTC	1 cut(s)	590
EcoRII	CCWGG	3 cut(s)	247, 254, 848
EcoT14I	CCWWGG	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	380
FaeI	CATG	3 cut(s)	41, 437, 526
FaqI	GGGAC	1 cut(s)	810
FatI	CATG	3 cut(s)	37, 433, 522
FauI	CCCGC	1 cut(s)	284
FauNDI	CATATG	1 cut(s)	346
FokI	GGATG	2 cut(s)	626, 853
FspBI	CTAG	3 cut(s)	30, 501, 821
GlaI	GCGC	1 cut(s)	773
GsuI	CTGGAG	3 cut(s)	231, 832, 978
HapII	CCGG	3 cut(s)	761, 964, 1046
HhaI	GCGC	1 cut(s)	774
Hin1II	CATG	3 cut(s)	41, 437, 526
Hin6I	GCGC	1 cut(s)	772
HinP1I	GCGC	1 cut(s)	772
HindIII	AAGCTT	1 cut(s)	734
HinfI	GANTC	5 cut(s)	5, 11, 526, 647, 863
HpaII	CCGG	3 cut(s)	761, 964, 1046
HphI	GGTGA	5 cut(s)	56, 527, 563, 1045, 1093
Hpy166II	GTNNAC	2 cut(s)	35, 639
Hpy188I	TCNGA	6 cut(s)	10, 16, 149, 183, 262, 1065
Hpy188III	TCNNGA	7 cut(s)	104, 110, 410, 587, 598, 701, 870
Hpy8I	GTNNAC	2 cut(s)	35, 639
Hpy99I	CGWCG	1 cut(s)	655
HpyAV	CCTTC	5 cut(s)	282, 429, 456, 512, 1093
HpyCH4III	ACNGT	1 cut(s)	471
HpyCH4IV	ACGT	2 cut(s)	48, 833
HpyCH4V	TGCA	1 cut(s)	955
HpyF10VI	GCNNNNNNNGC	1 cut(s)	412
HpyF3I	CTNAG	6 cut(s)	402, 579, 716, 726, 939, 1029
HpySE526I	ACGT	2 cut(s)	48, 833
Hsp92II	CATG	3 cut(s)	41, 437, 526
HspAI	GCGC	1 cut(s)	772
KspI	CCGCGG	1 cut(s)	292
Kzo9I	GATC	6 cut(s)	106, 251, 391, 980, 1042, 1065
LmnI	GCTCC	3 cut(s)	291, 334, 930
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	3 cut(s)	30, 501, 821
MaeII	ACGT	2 cut(s)	48, 833
MaeIII	GTNAC	2 cut(s)	44, 1081
MalI	GATC	6 cut(s)	108, 253, 393, 982, 1044, 1067
MboI	GATC	6 cut(s)	106, 251, 391, 980, 1042, 1065
MboII	GAAGA	6 cut(s)	397, 742, 781, 895, 935, 1085
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	2 cut(s)	251, 1042
MhlI	GDGCHC	1 cut(s)	945
MlyI	GAGTC	2 cut(s)	535, 656
MmeI	TCCRAC	1 cut(s)	736
MroXI	GAANNNNTTC	1 cut(s)	302
MseI	TTAA	9 cut(s)	84, 282, 462, 543, 630, 696, 740, 897, 908
MslI	CAYNNNNRTG	1 cut(s)	42
MspA1I	CMGCKG	2 cut(s)	230, 291
MspI	CCGG	3 cut(s)	761, 964, 1046
MspR9I	CCNGG	4 cut(s)	249, 256, 850, 965
MunI	CAATTG	1 cut(s)	354
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	3 cut(s)	249, 256, 850
MvnI	CGCG	2 cut(s)	291, 772
MwoI	GCNNNNNNNGC	1 cut(s)	412
NciI	CCSGG	1 cut(s)	965
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	6 cut(s)	106, 251, 391, 980, 1042, 1065
NlaIII	CATG	3 cut(s)	41, 437, 526
NlaIV	GGNNCC	5 cut(s)	253, 657, 798, 962, 1044
NmuCI	GTSAC	2 cut(s)	44, 1081
PctI	GAATGC	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	302
PfeI	GAWTC	3 cut(s)	5, 11, 863
PflFI	GACNNNGTC	1 cut(s)	707
PflMI	CCANNNNNTGG	1 cut(s)	1001
PfoI	TCCNGGA	2 cut(s)	247, 848
PinAI	ACCGGT	1 cut(s)	760
PleI	GAGTC	2 cut(s)	534, 655
PpsI	GAGTC	2 cut(s)	534, 655
PpuMI	RGGWCCY	1 cut(s)	797
PsiI	TTATAA	1 cut(s)	750
Psp5II	RGGWCCY	1 cut(s)	797
Psp6I	CCWGG	3 cut(s)	247, 254, 848
PspGI	CCWGG	3 cut(s)	247, 254, 848
PspN4I	GGNNCC	5 cut(s)	253, 657, 798, 962, 1044
PspPI	GGNCC	2 cut(s)	709, 797
PspPPI	RGGWCCY	1 cut(s)	797
PsuI	RGATCY	2 cut(s)	251, 1042
PsyI	GACNNNGTC	1 cut(s)	707
RsaI	GTAC	5 cut(s)	36, 51, 188, 323, 351
RsaNI	GTAC	5 cut(s)	35, 50, 187, 322, 350
RseI	CAYNNNNRTG	1 cut(s)	42
SacII	CCGCGG	1 cut(s)	292
SaqAI	TTAA	9 cut(s)	84, 282, 462, 543, 630, 696, 740, 897, 908
Sau3AI	GATC	6 cut(s)	106, 251, 391, 980, 1042, 1065
Sau96I	GGNCC	2 cut(s)	709, 797
ScaI	AGTACT	1 cut(s)	188
SchI	GAGTC	2 cut(s)	535, 656
ScrFI	CCNGG	4 cut(s)	249, 256, 850, 965
SduI	GDGCHC	1 cut(s)	945
SfaNI	GCATC	1 cut(s)	415
SfcI	CTRYAG	3 cut(s)	120, 337, 423
Sfr303I	CCGCGG	1 cut(s)	292
SgrBI	CCGCGG	1 cut(s)	292
SinI	GGWCC	2 cut(s)	709, 797
SmiMI	CAYNNNNRTG	1 cut(s)	42
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
SsiI	CCGC	4 cut(s)	230, 289, 291, 1011
SspI	AATATT	1 cut(s)	1023
SspMI	CTAG	3 cut(s)	30, 501, 821
StyD4I	CCNGG	4 cut(s)	247, 254, 848, 963
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	1 cut(s)	471
TaiI	ACGT	2 cut(s)	51, 836
TatI	WGTACW	2 cut(s)	34, 186
TfiI	GAWTC	3 cut(s)	5, 11, 863
Tru1I	TTAA	9 cut(s)	84, 282, 462, 543, 630, 696, 740, 897, 908
Tru9I	TTAA	9 cut(s)	84, 282, 462, 543, 630, 696, 740, 897, 908
TseFI	GTSAC	2 cut(s)	44, 1081
Tsp45I	GTSAC	2 cut(s)	44, 1081
TspDTI	ATGAA	1 cut(s)	583
TspGWI	ACGGA	1 cut(s)	185
Tth111I	GACNNNGTC	1 cut(s)	707
Van91I	CCANNNNNTGG	1 cut(s)	1001
VpaK11BI	GGWCC	2 cut(s)	709, 797
XagI	CCTNNNNNAGG	1 cut(s)	204
XapI	RAATTY	2 cut(s)	556, 590
XmnI	GAANNNNTTC	1 cut(s)	302
XspI	CTAG	3 cut(s)	30, 501, 821
ZrmI	AGTACT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.