Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003893

Physical Location & Seq

Genomic Coordinates Reverse (-)

5102424 .. 5104850

Gene Structure 2427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G14810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCGACGTTCACTCATCAAACCCCACAAACCCATTTCCTCTCTCGCCTTCCTCTCAGAGCTAAACCTAGACACTTCTCCGCAAGAGTCAAAATGTCTCTCCAAGAATCTGCGCCTTCACTCGCCGTCGTTGGCGTTACCGGAGCCGTCGGACAAGAATTCCTCTCCGTCTTATCCGATCGAGACTTCCCTTATAGCTCCATCAAGATGCTTGCATCGAAACGCTCCGCAGGGAAGCGTGTTGCCTTCGATGGCCATGAATACACGGTGGAGGAGCTCACGGCGGATAGCTTCAACGGTGTAGACATAGCTTTGTTCAGTGCTGGTGGATCCATAAGCAAAGAGTTTGGTCCTCTGGCGGCGGAGAAAGGAACCATTGTTGTTGATAATAGCTCGGCTTTTAGAATGGTTGATGGAGTTCCGCTTGTGATTCCTGAAGTGAATCCAGAAGCAATGAAAGGGATCAAAGTTGGAATGGGCAAAGGGGCTTTGATTGCAAACCCTAATTGCTCCACCATTATCTGTTTGATGGCTGTTACGCCTCTTCATCATCACGCAAAGGTGAAGAGAATGGTGGTTAGTACATATCAAGCAGCTAGTGGTGCTGGTGCTGCAGCTATGGAAGAGCTTGTTCAGCAGACTCGTGAGGTTTTAGAGGGTAAACCTCCGACTTGTAACATCTTCGGGCAGCAGTATGCATTTAACTTGTTTTCACATAATGCTCCTATTCTTGACAACGGTTACAACGAAGAGGAAATGAAACTTGTGAAGGAGACAAGGAAGATCTGGAATGACACAGAAGTAAAAGTAACAGCAACGTGTATACGTGTTCCAGTTATGCGTGCTCATGCAGAGAGTGTGAATCTTCAGTTTGAGAATCCTCTTGATGAGAACACAGCAAGGGAGATACTGAAGAAAGCACCTGGAGTTTATATAATAGATGACCGTGCTTCAAATACTTTCCCTACTCCACTCGATGTCTCTAACAAAGACGATGTAGCGGTTGGTAGGATAAGGCGAGACGTGTCTCAAGATGGCAATTTCGGGCTGGACATATTCGTTTGTGGAGACCAAATACGCAAAGGAGCTGCTCTGAATGCTGTTCAGATCGCTGAGATGCTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

Semialdhyde_dh Semialdhyde_dhC

Protein Analysis

375

Amino Acids

40.75

Weight (kDa)

6.52

Isoelectric Point (pI)

30.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Semialdhyde_dh	PF01118	41 - 154	3.4e-34	Semialdehyde dehydrogenase, NAD binding domain
Semialdhyde_dhC	PF02774	180 - 295	3.9e-32	Semialdehyde dehydrogenase, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14810 AT1G14810
fragaria_vesca	FvH4_4g33450
malus_domestica	MD13G1019500.v1.1 MD13G1041100.v1.1 MD16G1017700.v1.1
prunus_persica	Prupe.1G334400_v2.0.a1
pyrus_communis	pycom13g01660 pycom13g03540 pycom16g01600
rosa_chinensis	RchiOBHm_Chr2g0166251 RchiOBHm_Chr4g0442761
rosa_laevigata	RLG00000005986 RLG00000021601
rosa_multiflora	Rmu_sc0000595.1_g000031 Rmu_sc0007974.1_g000012 Rmu_sc0025004.1_g000001 Rmu_ssc0000204.1_g000022
rosa_roxburghii	Rroxscaffold_2G00085050
rosa_rugosa	Rorug02G0521600 Rorug04G0342800
rosa_samantha	Rh2AG587600 Rh2AG587700 Rh2BG599500 Rh2BG599600 Rh2CG570000 Rh2CG570500 Rh2DG609600 Rh4BG408100 Rh4CG423900 Rh5CG565000
rosa_wichuraiana	Rw0G003920 Rw2G048980 Rw4G034170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	303, 823
AciI	CCGC	7 cut(s)	81, 228, 284, 359, 362, 422, 1001
AclWI	GGATC	3 cut(s)	324, 337, 470
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	3 cut(s)	456, 851, 932
AfaI	GTAC	1 cut(s)	583
AflIII	ACRYGT	3 cut(s)	818, 826, 1023
AgsI	TTSAA	2 cut(s)	295, 954
AjiI	CACGTC	1 cut(s)	1024
AjnI	CCWGG	1 cut(s)	922
Alw21I	GWGCWC	2 cut(s)	279, 847
Alw26I	GTCTC	7 cut(s)	102, 177, 767, 985, 1014, 1032, 1062
AlwI	GGATC	3 cut(s)	324, 337, 470
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	5 cut(s)	593, 611, 614, 688, 1088
ApoI	RAATTY	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	1 cut(s)	574
AvaII	GGWCC	1 cut(s)	350
BalI	TGGCCA	1 cut(s)	255
BamHI	GGATCC	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	279
BauI	CACGAG	1 cut(s)	642
Bbv12I	GWGCWC	2 cut(s)	279, 847
BbvI	GCAGC	5 cut(s)	598, 605, 626, 700, 1075
BccI	CCATC	5 cut(s)	209, 245, 407, 523, 1028
BceAI	ACGGC	3 cut(s)	110, 131, 297
BciT130I	CCWGG	1 cut(s)	924
BcoDI	GTCTC	7 cut(s)	102, 177, 767, 985, 1014, 1032, 1062
BfaI	CTAG	2 cut(s)	69, 597
BfmI	CTRYAG	1 cut(s)	612
BglII	AGATCT	1 cut(s)	783
BisI	GCNGC	6 cut(s)	360, 594, 612, 615, 689, 1089
BlsI	GCNGC	6 cut(s)	361, 595, 613, 616, 690, 1090
Bme1390I	CCNGG	1 cut(s)	924
Bme18I	GGWCC	1 cut(s)	350
BmgBI	CACGTC	1 cut(s)	1024
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	3 cut(s)	145, 331, 373
BmrFI	CCNGG	1 cut(s)	924
BmsI	GCATC	3 cut(s)	198, 224, 1107
BpmI	CTGGAG	1 cut(s)	945
BpuEI	CTTGAG	1 cut(s)	1014
BsaAI	YACGTR	1 cut(s)	827
BsaI	GGTCTC	1 cut(s)	1062
BsaWI	WCCGGW	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	833
Bse3DI	GCAATG	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	924
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	2 cut(s)	70, 1104
BseNI	ACTGG	1 cut(s)	833
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	5 cut(s)	598, 605, 626, 700, 1075
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	1 cut(s)	255
BsiEI	CGRYCG	1 cut(s)	181
BsiHKAI	GWGCWC	2 cut(s)	279, 847
BsiSI	CCGG	1 cut(s)	141
BsmAI	GTCTC	7 cut(s)	102, 177, 767, 985, 1014, 1032, 1062
BsmBI	CGTCTC	1 cut(s)	1014
BsmI	GAATGC	1 cut(s)	1102
BsnI	GGCC	1 cut(s)	255
Bso31I	GGTCTC	1 cut(s)	1062
Bsp1286I	GDGCHC	2 cut(s)	279, 847
Bsp143I	GATC	5 cut(s)	178, 329, 462, 783, 1107
BspACI	CCGC	7 cut(s)	81, 228, 284, 359, 362, 422, 1001
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	2 cut(s)	69, 1105
BspLI	GGNNCC	3 cut(s)	145, 331, 373
BspMAI	CTGCAG	1 cut(s)	616
BspPI	GGATC	3 cut(s)	324, 337, 470
BspQI	GCTCTTC	1 cut(s)	618
BspTNI	GGTCTC	1 cut(s)	1062
BsrDI	GCAATG	1 cut(s)	459
BsrI	ACTGG	1 cut(s)	833
BssMI	GATC	5 cut(s)	178, 329, 462, 783, 1107
BssNAI	GTATAC	1 cut(s)	824
BssSI	CACGAG	1 cut(s)	642
Bst1107I	GTATAC	1 cut(s)	824
Bst2BI	CACGAG	1 cut(s)	642
Bst2UI	CCWGG	1 cut(s)	924
Bst4CI	ACNGT	4 cut(s)	268, 299, 740, 947
Bst6I	CTCTTC	4 cut(s)	549, 560, 618, 744
BstBAI	YACGTR	1 cut(s)	827
BstC8I	GCNNGC	2 cut(s)	213, 843
BstDEI	CTNAG	2 cut(s)	56, 1113
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	5 cut(s)	181, 332, 465, 786, 1110
BstMAI	GTCTC	7 cut(s)	102, 177, 767, 985, 1014, 1032, 1062
BstMBI	GATC	5 cut(s)	178, 329, 462, 783, 1107
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	5 cut(s)	494, 602, 611, 634, 1097
BstNI	CCWGG	1 cut(s)	924
BstSCI	CCNGG	1 cut(s)	922
BstSFI	CTRYAG	1 cut(s)	612
BstV1I	GCAGC	5 cut(s)	598, 605, 626, 700, 1075
BstX2I	RGATCY	2 cut(s)	329, 783
BstYI	RGATCY	2 cut(s)	329, 783
BstZ17I	GTATAC	1 cut(s)	824
BsuRI	GGCC	1 cut(s)	255
BtrI	CACGTC	1 cut(s)	1024
BtsIMutI	CAGTG	1 cut(s)	325
Cac8I	GCNNGC	2 cut(s)	213, 843
CfoI	GCGC	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	350
Csp6I	GTAC	1 cut(s)	582
CviAII	CATG	2 cut(s)	257, 848
CviQI	GTAC	1 cut(s)	582
DdeI	CTNAG	2 cut(s)	56, 1113
DpnI	GATC	5 cut(s)	180, 331, 464, 785, 1109
DpnII	GATC	5 cut(s)	178, 329, 462, 783, 1107
EaeI	YGGCCR	1 cut(s)	253
Eam1104I	CTCTTC	4 cut(s)	549, 560, 618, 744
EarI	CTCTTC	4 cut(s)	549, 560, 618, 744
EciI	GGCGGA	2 cut(s)	299, 377
Ecl136II	GAGCTC	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	279
Eco31I	GGTCTC	1 cut(s)	1062
Eco47I	GGWCC	1 cut(s)	350
Eco53kI	GAGCTC	1 cut(s)	277
Eco57I	CTGAAG	3 cut(s)	456, 851, 932
EcoICRI	GAGCTC	1 cut(s)	277
EcoRI	GAATTC	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	922
EcoT22I	ATGCAT	1 cut(s)	700
EcoT38I	GRGCYC	1 cut(s)	279
Esp3I	CGTCTC	1 cut(s)	1014
FaeI	CATG	2 cut(s)	260, 851
FatI	CATG	2 cut(s)	256, 847
FblI	GTMKAC	2 cut(s)	303, 823
Fnu4HI	GCNGC	6 cut(s)	360, 594, 612, 615, 689, 1089
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	6 cut(s)	360, 594, 612, 615, 689, 1089
FspBI	CTAG	2 cut(s)	69, 597
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	6 cut(s)	360, 594, 612, 615, 689, 1089
GsuI	CTGGAG	1 cut(s)	945
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	2 cut(s)	260, 851
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HinfI	GANTC	7 cut(s)	87, 107, 430, 442, 640, 862, 877
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	1 cut(s)	574
Hpy166II	GTNNAC	4 cut(s)	12, 304, 662, 824
Hpy188I	TCNGA	7 cut(s)	59, 152, 178, 669, 1095, 1107, 1127
Hpy188III	TCNNGA	9 cut(s)	182, 205, 434, 446, 644, 731, 787, 884, 1031
Hpy8I	GTNNAC	4 cut(s)	12, 304, 662, 824
Hpy99I	CGWCG	3 cut(s)	10, 131, 152
HpyAV	CCTTC	4 cut(s)	59, 126, 256, 763
HpyCH4III	ACNGT	4 cut(s)	268, 299, 740, 947
HpyCH4IV	ACGT	4 cut(s)	8, 818, 826, 1023
HpyCH4V	TGCA	5 cut(s)	215, 497, 614, 698, 851
HpyF10VI	GCNNNNNNNGC	5 cut(s)	494, 602, 611, 634, 1097
HpyF3I	CTNAG	2 cut(s)	56, 1113
HpySE526I	ACGT	4 cut(s)	8, 818, 826, 1023
Hsp92II	CATG	2 cut(s)	260, 851
HspAI	GCGC	1 cut(s)	113
Kzo9I	GATC	5 cut(s)	178, 329, 462, 783, 1107
LguI	GCTCTTC	1 cut(s)	618
LmnI	GCTCC	7 cut(s)	143, 203, 230, 274, 515, 727, 1085
Lsp1109I	GCAGC	5 cut(s)	598, 605, 626, 700, 1075
LweI	GCATC	3 cut(s)	198, 224, 1107
MaeI	CTAG	2 cut(s)	69, 597
MaeII	ACGT	4 cut(s)	8, 818, 826, 1023
MaeIII	GTNAC	5 cut(s)	136, 535, 674, 740, 808
MalI	GATC	5 cut(s)	180, 331, 464, 785, 1109
MboI	GATC	5 cut(s)	178, 329, 462, 783, 1107
MboII	GAAGA	8 cut(s)	536, 577, 635, 673, 761, 793, 857, 925
MflI	RGATCY	2 cut(s)	329, 783
MhlI	GDGCHC	2 cut(s)	279, 847
MlsI	TGGCCA	1 cut(s)	255
MluCI	AATT	3 cut(s)	158, 505, 1039
MluNI	TGGCCA	1 cut(s)	255
MlyI	GAGTC	2 cut(s)	96, 634
MmeI	TCCRAC	3 cut(s)	130, 451, 692
Mox20I	TGGCCA	1 cut(s)	255
Mph1103I	ATGCAT	1 cut(s)	700
MscI	TGGCCA	1 cut(s)	255
MseI	TTAA	1 cut(s)	702
MslI	CAYNNNNRTG	1 cut(s)	206
Msp20I	TGGCCA	1 cut(s)	255
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	924
Mva1269I	GAATGC	1 cut(s)	1102
MvaI	CCWGG	1 cut(s)	924
MwoI	GCNNNNNNNGC	5 cut(s)	494, 602, 611, 634, 1097
NdeII	GATC	5 cut(s)	178, 329, 462, 783, 1107
NlaIII	CATG	2 cut(s)	260, 851
NlaIV	GGNNCC	3 cut(s)	145, 331, 373
NmeAIII	GCCGAG	1 cut(s)	374
NsiI	ATGCAT	1 cut(s)	700
PciSI	GCTCTTC	1 cut(s)	618
PcsI	WCGNNNNNNNCGW	1 cut(s)	744
PctI	GAATGC	1 cut(s)	1102
PfeI	GAWTC	5 cut(s)	107, 430, 442, 862, 877
PkrI	GCNGC	6 cut(s)	361, 595, 613, 616, 690, 1090
Ple19I	CGATCG	1 cut(s)	181
PleI	GAGTC	2 cut(s)	95, 634
PpsI	GAGTC	2 cut(s)	95, 634
Ppu21I	YACGTR	1 cut(s)	827
Psp124BI	GAGCTC	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	922
PspGI	CCWGG	1 cut(s)	922
PspN4I	GGNNCC	3 cut(s)	145, 331, 373
PspPI	GGNCC	1 cut(s)	350
PstI	CTGCAG	1 cut(s)	616
PsuI	RGATCY	2 cut(s)	329, 783
PvuI	CGATCG	1 cut(s)	181
RsaI	GTAC	1 cut(s)	583
RsaNI	GTAC	1 cut(s)	582
RseI	CAYNNNNRTG	1 cut(s)	206
SacI	GAGCTC	1 cut(s)	279
SapI	GCTCTTC	1 cut(s)	618
SaqAI	TTAA	1 cut(s)	702
SatI	GCNGC	6 cut(s)	360, 594, 612, 615, 689, 1089
Sau3AI	GATC	5 cut(s)	178, 329, 462, 783, 1107
Sau96I	GGNCC	1 cut(s)	350
SchI	GAGTC	2 cut(s)	96, 634
ScrFI	CCNGG	1 cut(s)	924
SduI	GDGCHC	2 cut(s)	279, 847
SfaNI	GCATC	3 cut(s)	198, 224, 1107
SfcI	CTRYAG	1 cut(s)	612
SinI	GGWCC	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	1029
SmoI	CTYRAG	1 cut(s)	1029
Sse9I	AATT	3 cut(s)	158, 505, 1039
SsiI	CCGC	7 cut(s)	81, 228, 284, 359, 362, 422, 1001
SspMI	CTAG	2 cut(s)	69, 597
SstI	GAGCTC	1 cut(s)	279
StyD4I	CCNGG	1 cut(s)	922
TaaI	ACNGT	4 cut(s)	268, 299, 740, 947
TaiI	ACGT	4 cut(s)	11, 821, 829, 1026
TaqI	TCGA	4 cut(s)	181, 218, 249, 975
TasI	AATT	3 cut(s)	158, 505, 1039
TatI	WGTACW	1 cut(s)	581
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	5 cut(s)	107, 430, 442, 862, 877
Tru1I	TTAA	1 cut(s)	702
Tru9I	TTAA	1 cut(s)	702
TscAI	CASTG	1 cut(s)	325
TseI	GCWGC	5 cut(s)	593, 611, 614, 688, 1088
TspDTI	ATGAA	4 cut(s)	273, 470, 536, 773
TspGWI	ACGGA	1 cut(s)	157
TspRI	CASTG	1 cut(s)	325
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	1 cut(s)	158
XmiI	GTMKAC	2 cut(s)	303, 823
XspI	CTAG	2 cut(s)	69, 597
Zsp2I	ATGCAT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.