pycom13g03540

Aspartate-semialdehyde

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0003893
Physical Location & Seq
Forward (+)
2346739 .. 2351818
5080 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g03540.4

Sequence Viewer

Length: 630 bp
ATGGTGGGGGCCGAGCTTGTGTGCAAGCCAATGAGCTTGTCACCATCGGGAAGGAAGCAAGTCGGAGCTCTTAATATAGAGACGACTGCTAAGTTCCAGGATGGGCACAACTCCACCCAATCGCTCATTGCTAACCCAAATTGCTCCACCATTATTTGTTTAATGGCTGTCACCCCTCTCCATCGCCATTCTAAGGTAAAACGAATGGTGGTTAGCACGTATCAGGCTGCTAGTGGAGCTGGTGCTGCTGCCGTGAGAGAGCTTGAGCTGCAAACTAAGGAGGTCCTGGAAGGGAAGCCGCCGACCACTAAGATATTCTCGCGGCAGATCGGTCTATTTTATGCGTTTAATTTGTTTTCGCACAACTCGGCAGTTCTTTCAAATGGATACAATGAAGAGGAAATGAAACTAGTCAAGGAGACAAGAAAAATATGGAGTGACAATGATGTCAAGGTAACTGCCACATGTATACGAGTTCCTGTCACGCGGGCACATGCTGAGAGTATAAATCTTCAGTTTGAGAACCAACTTGATGAAGACACAGCAAGGGAAATTCTGAAGAGATCGCCTGGACTGGTGGTTATTGATGACCGGACAGCGAATAACTTGTTGAGAATCAATGTTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230
Pfam Domains
Protein Families
Semialdhyde_dh Semialdhyde_dhC

Protein Analysis

210

Amino Acids

23.09

Weight (kDa)

9.1

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 446
AccI GTMKAC 1 cut(s) 469
AccII CGCG 2 cut(s) 322, 487
AciI CCGC 3 cut(s) 299, 322, 487
AcsI RAATTY 1 cut(s) 552
AcuI CTGAAG 2 cut(s) 497, 578
AfiI CCNNNNNNNGG 1 cut(s) 193
AflIII ACRYGT 1 cut(s) 464
AgsI TTSAA 1 cut(s) 381
AhlI ACTAGT 1 cut(s) 409
AjnI CCWGG 3 cut(s) 96, 285, 568
AluBI AGCT 6 cut(s) 16, 36, 68, 239, 262, 268
AluI AGCT 6 cut(s) 16, 36, 68, 239, 262, 268
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 2 cut(s) 74, 413
AoxI GGCC 1 cut(s) 9
ApeKI GCWGC 4 cut(s) 227, 245, 248, 268
ApoI RAATTY 1 cut(s) 552
AspS9I GGNCC 2 cut(s) 9, 283
AsuHPI GGTGA 2 cut(s) 33, 163
AvaII GGWCC 1 cut(s) 283
BaeGI GKGCMC 2 cut(s) 108, 493
BanII GRGCYC 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 543
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 4 cut(s) 214, 232, 235, 255
BccI CCATC 3 cut(s) 52, 95, 189
BceAI ACGGC 1 cut(s) 236
BciT130I CCWGG 3 cut(s) 98, 287, 570
BciVI GTATCC 1 cut(s) 380
BcoDI GTCTC 2 cut(s) 74, 413
BcuI ACTAGT 1 cut(s) 409
BfaI CTAG 2 cut(s) 231, 410
BfuI GTATCC 1 cut(s) 380
BisI GCNGC 6 cut(s) 228, 246, 249, 269, 299, 323
BlsI GCNGC 6 cut(s) 229, 247, 250, 270, 300, 324
Bme1390I CCNGG 3 cut(s) 98, 287, 570
Bme18I GGWCC 1 cut(s) 283
BmgT120I GGNCC 2 cut(s) 9, 283
BmiI GGNNCC 1 cut(s) 10
BmrFI CCNGG 3 cut(s) 98, 287, 570
BpiI GAAGAC 1 cut(s) 543
BpuEI CTTGAG 1 cut(s) 284
BsaAI YACGTR 1 cut(s) 219
BsaWI WCCGGW 1 cut(s) 591
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 579
Bse3DI GCAATG 1 cut(s) 126
BseBI CCWGG 3 cut(s) 98, 287, 570
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMI GCAATG 1 cut(s) 126
BseMII CTCAG 1 cut(s) 489
BseNI ACTGG 1 cut(s) 579
BseSI GKGCMC 2 cut(s) 108, 493
BseXI GCAGC 4 cut(s) 214, 232, 235, 255
Bsh1236I CGCG 2 cut(s) 322, 487
BshFI GGCC 1 cut(s) 11
BsiHKAI GWGCWC 1 cut(s) 70
BsiSI CCGG 1 cut(s) 592
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 2 cut(s) 74, 413
BsmBI CGTCTC 1 cut(s) 74
BsnI GGCC 1 cut(s) 11
Bsp1286I GDGCHC 3 cut(s) 70, 108, 493
Bsp143I GATC 2 cut(s) 327, 563
BspACI CCGC 3 cut(s) 299, 322, 487
BspANI GGCC 1 cut(s) 11
BspCNI CTCAG 1 cut(s) 490
BspFNI CGCG 2 cut(s) 322, 487
BspLI GGNNCC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 126
BsrI ACTGG 1 cut(s) 579
BssMI GATC 2 cut(s) 327, 563
BssNAI GTATAC 1 cut(s) 470
Bst1107I GTATAC 1 cut(s) 470
Bst2UI CCWGG 3 cut(s) 98, 287, 570
Bst6I CTCTTC 2 cut(s) 390, 554
BstBAI YACGTR 1 cut(s) 219
BstC8I GCNNGC 2 cut(s) 26, 489
BstDEI CTNAG 5 cut(s) 90, 192, 276, 309, 498
BstF5I GGATG 1 cut(s) 106
BstFNI CGCG 2 cut(s) 322, 487
BstKTI GATC 2 cut(s) 330, 566
BstMAI GTCTC 2 cut(s) 74, 413
BstMBI GATC 2 cut(s) 327, 563
BstMWI GCNNNNNNNGC 3 cut(s) 236, 245, 268
BstNI CCWGG 3 cut(s) 98, 287, 570
BstNSI RCATGY 2 cut(s) 468, 497
BstSCI CCNGG 3 cut(s) 96, 285, 568
BstSLI GKGCMC 2 cut(s) 108, 493
BstUI CGCG 2 cut(s) 322, 487
BstV1I GCAGC 4 cut(s) 214, 232, 235, 255
BstV2I GAAGAC 1 cut(s) 543
BstZ17I GTATAC 1 cut(s) 470
BsuI GTATCC 1 cut(s) 380
BsuRI GGCC 1 cut(s) 11
BtgZI GCGATG 1 cut(s) 167
BtsCI GGATG 1 cut(s) 106
Cac8I GCNNGC 2 cut(s) 26, 489
Cfr13I GGNCC 2 cut(s) 9, 283
CviAII CATG 2 cut(s) 465, 494
DdeI CTNAG 5 cut(s) 90, 192, 276, 309, 498
DpnI GATC 2 cut(s) 329, 565
DpnII GATC 2 cut(s) 327, 563
DrdI GACNNNNNNGTC 1 cut(s) 446
DseDI GACNNNNNNGTC 1 cut(s) 446
Eam1104I CTCTTC 2 cut(s) 390, 554
EarI CTCTTC 2 cut(s) 390, 554
Ecl136II GAGCTC 1 cut(s) 68
Eco24I GRGCYC 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 283
Eco53kI GAGCTC 1 cut(s) 68
Eco57I CTGAAG 2 cut(s) 497, 578
EcoICRI GAGCTC 1 cut(s) 68
EcoO109I RGGNCCY 1 cut(s) 283
EcoRII CCWGG 3 cut(s) 96, 285, 568
EcoT38I GRGCYC 1 cut(s) 70
Esp3I CGTCTC 1 cut(s) 74
FaeI CATG 2 cut(s) 468, 497
FaiI YATR 7 cut(s) 77, 342, 433, 466, 470, 495, 506
FatI CATG 2 cut(s) 464, 493
FauI CCCGC 1 cut(s) 480
FblI GTMKAC 1 cut(s) 469
Fnu4HI GCNGC 6 cut(s) 228, 246, 249, 269, 299, 323
FokI GGATG 1 cut(s) 113
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 6 cut(s) 228, 246, 249, 269, 299, 323
FspBI CTAG 2 cut(s) 231, 410
GluI GCNGC 6 cut(s) 228, 246, 249, 269, 299, 323
HaeIII GGCC 1 cut(s) 11
HapII CCGG 1 cut(s) 592
Hin1II CATG 2 cut(s) 468, 497
HinfI GANTC 1 cut(s) 615
HpaII CCGG 1 cut(s) 592
HphI GGTGA 2 cut(s) 33, 163
Hpy166II GTNNAC 1 cut(s) 470
Hpy188I TCNGA 2 cut(s) 65, 558
Hpy188III TCNNGA 1 cut(s) 48
Hpy8I GTNNAC 1 cut(s) 470
HpyAV CCTTC 2 cut(s) 45, 284
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 2 cut(s) 24, 271
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 245, 268
HpyF3I CTNAG 5 cut(s) 90, 192, 276, 309, 498
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 2 cut(s) 468, 497
Kzo9I GATC 2 cut(s) 327, 563
LmnI GCTCC 3 cut(s) 65, 149, 236
Lsp1109I GCAGC 4 cut(s) 214, 232, 235, 255
MaeI CTAG 2 cut(s) 231, 410
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 5 cut(s) 39, 169, 437, 454, 481
MalI GATC 2 cut(s) 329, 565
MboI GATC 2 cut(s) 327, 563
MboII GAAGA 4 cut(s) 407, 503, 548, 571
MhlI GDGCHC 3 cut(s) 70, 108, 493
MluCI AATT 3 cut(s) 139, 349, 552
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 3 cut(s) 186, 274, 391
MseI TTAA 3 cut(s) 72, 161, 348
MspI CCGG 1 cut(s) 592
MspR9I CCNGG 3 cut(s) 98, 287, 570
MvaI CCWGG 3 cut(s) 98, 287, 570
MvnI CGCG 2 cut(s) 322, 487
MwoI GCNNNNNNNGC 3 cut(s) 236, 245, 268
NdeII GATC 2 cut(s) 327, 563
NlaIII CATG 2 cut(s) 468, 497
NlaIV GGNNCC 1 cut(s) 10
NmeAIII GCCGAG 2 cut(s) 37, 347
NmuCI GTSAC 4 cut(s) 39, 169, 437, 481
NspI RCATGY 2 cut(s) 468, 497
PciI ACATGT 1 cut(s) 464
PfeI GAWTC 1 cut(s) 615
PfoI TCCNGGA 2 cut(s) 96, 285
PkrI GCNGC 6 cut(s) 229, 247, 250, 270, 300, 324
Ppu21I YACGTR 1 cut(s) 219
PpuMI RGGWCCY 1 cut(s) 283
PscI ACATGT 1 cut(s) 464
Psp124BI GAGCTC 1 cut(s) 70
Psp5II RGGWCCY 1 cut(s) 283
Psp6I CCWGG 3 cut(s) 96, 285, 568
PspGI CCWGG 3 cut(s) 96, 285, 568
PspN4I GGNNCC 1 cut(s) 10
PspPI GGNCC 2 cut(s) 9, 283
PspPPI RGGWCCY 1 cut(s) 283
SacI GAGCTC 1 cut(s) 70
SaqAI TTAA 3 cut(s) 72, 161, 348
SatI GCNGC 6 cut(s) 228, 246, 249, 269, 299, 323
Sau3AI GATC 2 cut(s) 327, 563
Sau96I GGNCC 2 cut(s) 9, 283
ScrFI CCNGG 3 cut(s) 98, 287, 570
SduI GDGCHC 3 cut(s) 70, 108, 493
SinI GGWCC 1 cut(s) 283
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
SpeI ACTAGT 1 cut(s) 409
Sse9I AATT 3 cut(s) 139, 349, 552
SsiI CCGC 3 cut(s) 299, 322, 487
SspMI CTAG 2 cut(s) 231, 410
SstI GAGCTC 1 cut(s) 70
StyD4I CCNGG 3 cut(s) 96, 285, 568
TaiI ACGT 1 cut(s) 221
TaqII GACCGA 1 cut(s) 320
TasI AATT 3 cut(s) 139, 349, 552
TauI GCSGC 2 cut(s) 301, 325
TfiI GAWTC 1 cut(s) 615
Tru1I TTAA 3 cut(s) 72, 161, 348
Tru9I TTAA 3 cut(s) 72, 161, 348
TseFI GTSAC 4 cut(s) 39, 169, 437, 481
TseI GCWGC 4 cut(s) 227, 245, 248, 268
Tsp45I GTSAC 4 cut(s) 39, 169, 437, 481
TspDTI ATGAA 3 cut(s) 408, 419, 549
VpaK11BI GGWCC 1 cut(s) 283
XapI RAATTY 1 cut(s) 552
XceI RCATGY 2 cut(s) 468, 497
XmiI GTMKAC 1 cut(s) 469
XspI CTAG 2 cut(s) 231, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.