Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007974.1

Orthogroup ID

OG0003893

Physical Location & Seq

Genomic Coordinates Forward (+)

41619 .. 45738

Gene Structure 4120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007974.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgcatgtggtcttcgctctccaagaagattatgacggcaacaaatatagcatacttcaacatacaaagttcatcaacttcttgagaaagtacttggagctctgtgacaaagacagtccattagaaaaattctggcttggcgcgagatttatcggtgacatggatttgctaggtaggttggtgaaaagcatggtggtcagtacgtatcaggctgctagtggagctgctgctgctatgatagagcttgagcagcaaactcatgaggttctggaagggaagccagtaacttctgagatatttcagcggttggttctgatggcccagcctaacaattcgagtgacgcgctggaaggcttgggtgggcagcacgctcagaagggagaacatgggagaaggaagacgcgcccacttgcgctggagagagaaaaatcactgcaggtggtctgctccagtgggccccgcaaggcgaaagttgtctgctgccgactgttgcgtgtcccaacagtcactaaatgcacggctgcgatcgctccattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

Semialdhyde_dh Semialdhyde_dhC

Protein Analysis

179

Amino Acids

19.93

Weight (kDa)

8.99

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14810 AT1G14810
fragaria_vesca	FvH4_4g33450
malus_domestica	MD13G1019500.v1.1 MD13G1041100.v1.1 MD16G1017700.v1.1
prunus_persica	Prupe.1G334400_v2.0.a1
pyrus_communis	pycom13g01660 pycom13g03540 pycom16g01600
rosa_chinensis	RchiOBHm_Chr2g0166251 RchiOBHm_Chr4g0442761
rosa_laevigata	RLG00000005986 RLG00000021601
rosa_multiflora	Rmu_sc0000595.1_g000031 Rmu_sc0007974.1_g000012 Rmu_sc0025004.1_g000001 Rmu_ssc0000204.1_g000022
rosa_roxburghii	Rroxscaffold_2G00085050
rosa_rugosa	Rorug02G0521600 Rorug04G0342800
rosa_samantha	Rh2AG587600 Rh2AG587700 Rh2BG599500 Rh2BG599600 Rh2CG570000 Rh2CG570500 Rh2DG609600 Rh4BG408100 Rh4CG423900 Rh5CG565000
rosa_wichuraiana	Rw0G003920 Rw2G048980 Rw4G034170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	427
Acc36I	ACCTGC	1 cut(s)	427
AccII	CGCG	3 cut(s)	143, 344, 403
AciI	CCGC	2 cut(s)	304, 460
AcsI	RAATTY	1 cut(s)	128
AfaI	GTAC	2 cut(s)	92, 202
AgsI	TTSAA	1 cut(s)	59
AluBI	AGCT	3 cut(s)	100, 224, 244
AluI	AGCT	3 cut(s)	100, 224, 244
Alw21I	GWGCWC	1 cut(s)	102
AoxI	GGCC	2 cut(s)	318, 455
ApaI	GGGCCC	1 cut(s)	459
ApeKI	GCWGC	8 cut(s)	212, 224, 227, 230, 250, 364, 480, 521
ApoI	RAATTY	1 cut(s)	128
AsiSI	GCGATCGC	1 cut(s)	528
AspLEI	GCGC	4 cut(s)	143, 346, 405, 415
AspS9I	GGNCC	3 cut(s)	319, 455, 456
AsuHPI	GGTGA	2 cut(s)	167, 193
BaeGI	GKGCMC	1 cut(s)	459
BanII	GRGCYC	2 cut(s)	102, 459
BbsI	GAAGAC	2 cut(s)	4, 404
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	8 cut(s)	199, 211, 214, 217, 262, 376, 467, 508
BccI	CCATC	1 cut(s)	310
BceAI	ACGGC	2 cut(s)	52, 534
BfaI	CTAG	2 cut(s)	170, 216
BfmI	CTRYAG	1 cut(s)	434
BfuAI	ACCTGC	1 cut(s)	427
BisI	GCNGC	8 cut(s)	213, 225, 228, 231, 251, 365, 481, 522
BlsI	GCNGC	8 cut(s)	214, 226, 229, 232, 252, 366, 482, 523
BmcAI	AGTACT	1 cut(s)	92
BmgT120I	GGNCC	3 cut(s)	319, 455, 456
BmiI	GGNNCC	2 cut(s)	457, 458
BpiI	GAAGAC	2 cut(s)	4, 404
BpmI	CTGGAG	2 cut(s)	433, 437
BpuEI	CTTGAG	2 cut(s)	103, 266
BsaAI	YACGTR	1 cut(s)	204
Bse1I	ACTGG	2 cut(s)	281, 450
BseMII	CTCAG	2 cut(s)	282, 386
BseNI	ACTGG	2 cut(s)	281, 450
BseSI	GKGCMC	1 cut(s)	459
BseXI	GCAGC	8 cut(s)	199, 211, 214, 217, 262, 376, 467, 508
BseYI	CCCAGC	1 cut(s)	321
Bsh1236I	CGCG	3 cut(s)	143, 344, 403
Bsh1285I	CGRYCG	1 cut(s)	528
BshFI	GGCC	2 cut(s)	320, 457
BsiEI	CGRYCG	1 cut(s)	528
BsiHKAI	GWGCWC	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	482
BsmFI	GGGAC	1 cut(s)	482
BsnI	GGCC	2 cut(s)	320, 457
Bsp120I	GGGCCC	1 cut(s)	455
Bsp1286I	GDGCHC	2 cut(s)	102, 459
Bsp143I	GATC	1 cut(s)	525
BspACI	CCGC	2 cut(s)	304, 460
BspANI	GGCC	2 cut(s)	320, 457
BspCNI	CTCAG	2 cut(s)	283, 385
BspFNI	CGCG	3 cut(s)	143, 344, 403
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	2 cut(s)	457, 458
BspMAI	CTGCAG	1 cut(s)	438
BspMI	ACCTGC	1 cut(s)	427
BsrI	ACTGG	2 cut(s)	281, 450
BssMI	GATC	1 cut(s)	525
Bst4CI	ACNGT	3 cut(s)	116, 489, 505
BstBAI	YACGTR	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	2 cut(s)	291, 372
BstFNI	CGCG	3 cut(s)	143, 344, 403
BstHHI	GCGC	4 cut(s)	143, 346, 405, 415
BstKTI	GATC	1 cut(s)	528
BstMBI	GATC	1 cut(s)	525
BstMCI	CGRYCG	1 cut(s)	528
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 230, 250, 527
BstNSI	RCATGY	1 cut(s)	8
BstSFI	CTRYAG	1 cut(s)	434
BstSLI	GKGCMC	1 cut(s)	459
BstSNI	TACGTA	1 cut(s)	204
BstUI	CGCG	3 cut(s)	143, 344, 403
BstV1I	GCAGC	8 cut(s)	199, 211, 214, 217, 262, 376, 467, 508
BstV2I	GAAGAC	2 cut(s)	4, 404
BsuRI	GGCC	2 cut(s)	320, 457
BtsI	GCAGTG	1 cut(s)	431
BtsIMutI	CAGTG	2 cut(s)	431, 457
BveI	ACCTGC	1 cut(s)	427
Cac8I	GCNNGC	1 cut(s)	369
CciI	TCATGA	1 cut(s)	259
CfoI	GCGC	4 cut(s)	143, 346, 405, 415
Cfr13I	GGNCC	3 cut(s)	319, 455, 456
CseI	GACGC	2 cut(s)	350, 409
Csp6I	GTAC	2 cut(s)	91, 201
CviAII	CATG	5 cut(s)	5, 160, 190, 260, 386
CviQI	GTAC	2 cut(s)	91, 201
DdeI	CTNAG	2 cut(s)	291, 372
DpnI	GATC	1 cut(s)	527
DpnII	GATC	1 cut(s)	525
Ecl136II	GAGCTC	1 cut(s)	100
Eco105I	TACGTA	1 cut(s)	204
Eco24I	GRGCYC	2 cut(s)	102, 459
Eco53kI	GAGCTC	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	100
EcoO109I	RGGNCCY	1 cut(s)	456
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	102, 459
FaeI	CATG	5 cut(s)	8, 163, 193, 263, 389
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	5 cut(s)	4, 159, 189, 259, 385
FauI	CCCGC	1 cut(s)	467
Fnu4HI	GCNGC	8 cut(s)	213, 225, 228, 231, 251, 365, 481, 522
FriOI	GRGCYC	2 cut(s)	102, 459
Fsp4HI	GCNGC	8 cut(s)	213, 225, 228, 231, 251, 365, 481, 522
FspBI	CTAG	2 cut(s)	170, 216
GlaI	GCGC	4 cut(s)	142, 345, 404, 414
GluI	GCNGC	8 cut(s)	213, 225, 228, 231, 251, 365, 481, 522
GsaI	CCCAGC	1 cut(s)	325
GsuI	CTGGAG	2 cut(s)	433, 437
HaeIII	GGCC	2 cut(s)	320, 457
HgaI	GACGC	2 cut(s)	350, 409
HhaI	GCGC	4 cut(s)	143, 346, 405, 415
Hin1II	CATG	5 cut(s)	8, 163, 193, 263, 389
Hin6I	GCGC	4 cut(s)	141, 344, 403, 413
HinP1I	GCGC	4 cut(s)	141, 344, 403, 413
HphI	GGTGA	2 cut(s)	167, 193
Hpy188I	TCNGA	3 cut(s)	292, 315, 375
Hpy188III	TCNNGA	3 cut(s)	82, 260, 269
HpyAV	CCTTC	4 cut(s)	266, 344, 370, 387
HpyCH4III	ACNGT	3 cut(s)	116, 489, 505
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	3 cut(s)	4, 436, 516
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 230, 250, 527
HpyF3I	CTNAG	2 cut(s)	291, 372
HpySE526I	ACGT	1 cut(s)	203
Hsp92II	CATG	5 cut(s)	8, 163, 193, 263, 389
HspAI	GCGC	4 cut(s)	141, 344, 403, 413
Kzo9I	GATC	1 cut(s)	525
LmnI	GCTCC	4 cut(s)	97, 221, 452, 535
LpnPI	CCDG	9 cut(s)	118, 194, 254, 294, 332, 335, 401, 422, 463
Lsp1109I	GCAGC	8 cut(s)	199, 211, 214, 217, 262, 376, 467, 508
MaeI	CTAG	2 cut(s)	170, 216
MaeII	ACGT	1 cut(s)	203
MaeIII	GTNAC	5 cut(s)	104, 155, 283, 338, 505
MalI	GATC	1 cut(s)	527
MboI	GATC	1 cut(s)	525
MboII	GAAGA	3 cut(s)	4, 38, 409
MhlI	GDGCHC	2 cut(s)	102, 459
MluCI	AATT	2 cut(s)	128, 331
MnlI	CCTC	1 cut(s)	256
Mph1103I	ATGCAT	1 cut(s)	6
MspA1I	CMGCKG	1 cut(s)	304
MvnI	CGCG	3 cut(s)	143, 344, 403
MwoI	GCNNNNNNNGC	4 cut(s)	221, 230, 250, 527
NdeII	GATC	1 cut(s)	525
NlaIII	CATG	5 cut(s)	8, 163, 193, 263, 389
NlaIV	GGNNCC	2 cut(s)	457, 458
NmuCI	GTSAC	4 cut(s)	104, 155, 338, 505
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PagI	TCATGA	1 cut(s)	259
PaqCI	CACCTGC	1 cut(s)	427
PkrI	GCNGC	8 cut(s)	214, 226, 229, 232, 252, 366, 482, 523
Ple19I	CGATCG	1 cut(s)	528
Ppu21I	YACGTR	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	102
PspFI	CCCAGC	1 cut(s)	321
PspN4I	GGNNCC	2 cut(s)	457, 458
PspOMI	GGGCCC	1 cut(s)	455
PspPI	GGNCC	3 cut(s)	319, 455, 456
PstI	CTGCAG	1 cut(s)	438
PvuI	CGATCG	1 cut(s)	528
RgaI	GCGATCGC	1 cut(s)	528
RsaI	GTAC	2 cut(s)	92, 202
RsaNI	GTAC	2 cut(s)	91, 201
SacI	GAGCTC	1 cut(s)	102
SatI	GCNGC	8 cut(s)	213, 225, 228, 231, 251, 365, 481, 522
Sau3AI	GATC	1 cut(s)	525
Sau96I	GGNCC	3 cut(s)	319, 455, 456
ScaI	AGTACT	1 cut(s)	92
SduI	GDGCHC	2 cut(s)	102, 459
SetI	ASST	8 cut(s)	102, 175, 179, 206, 226, 246, 267, 441
SfaAI	GCGATCGC	1 cut(s)	528
SfcI	CTRYAG	1 cut(s)	434
SgfI	GCGATCGC	1 cut(s)	528
SmlI	CTYRAG	2 cut(s)	82, 245
SmoI	CTYRAG	2 cut(s)	82, 245
SnaBI	TACGTA	1 cut(s)	204
Sse9I	AATT	2 cut(s)	128, 331
SsiI	CCGC	2 cut(s)	304, 460
SspMI	CTAG	2 cut(s)	170, 216
SstI	GAGCTC	1 cut(s)	102
TaaI	ACNGT	3 cut(s)	116, 489, 505
TaiI	ACGT	1 cut(s)	206
TaqI	TCGA	1 cut(s)	335
TasI	AATT	2 cut(s)	128, 331
TatI	WGTACW	1 cut(s)	90
TscAI	CASTG	2 cut(s)	438, 457
TseFI	GTSAC	4 cut(s)	104, 155, 338, 505
TseI	GCWGC	8 cut(s)	212, 224, 227, 230, 250, 364, 480, 521
Tsp45I	GTSAC	4 cut(s)	104, 155, 338, 505
TspDTI	ATGAA	1 cut(s)	61
TspRI	CASTG	2 cut(s)	438, 457
XapI	RAATTY	1 cut(s)	128
XceI	RCATGY	1 cut(s)	8
XspI	CTAG	2 cut(s)	170, 216
ZrmI	AGTACT	1 cut(s)	92
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.