Rh2CG570500

Aspartate-semialdehyde

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0003893
Physical Location & Seq
Reverse (-)
75042033 .. 75042692
660 bp
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UTR
Exon/CDS
Intron
Rh2CG570500.1

Sequence Viewer

Length: 174 bp
ATGAAGCATGTGAAATCCAAATTACGAGTGAAAAGCATGGTGGTCAGTACGTATCAGGCTGCTAGTGGAGCTGCTGCTGCTATGATAGAGCTTGAGCAGCAAACTCATGAGGTTCTGGAAGGGAAGCCAGTAACTTCTGAGATATTTCAGCGCGGTTCTTCCAAATGGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230
Pfam Domains
Protein Families
Semialdhyde_dh Semialdhyde_dhC

Protein Analysis

57

Amino Acids

6.3

Weight (kDa)

9.6

Isoelectric Point (pI)

31.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Semialdhyde_dhC PF02774 8 - 50 4.7e-06 Semialdehyde dehydrogenase, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 153
AciI CCGC 1 cut(s) 153
AfaI GTAC 1 cut(s) 49
AluBI AGCT 2 cut(s) 71, 91
AluI AGCT 2 cut(s) 71, 91
ApeKI GCWGC 5 cut(s) 59, 71, 74, 77, 97
AspLEI GCGC 1 cut(s) 153
BbvI GCAGC 5 cut(s) 46, 58, 61, 64, 109
BfaI CTAG 1 cut(s) 63
BisI GCNGC 5 cut(s) 60, 72, 75, 78, 98
BlsI GCNGC 5 cut(s) 61, 73, 76, 79, 99
BpuEI CTTGAG 1 cut(s) 113
BsaAI YACGTR 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 128
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 128
BseXI GCAGC 5 cut(s) 46, 58, 61, 64, 109
Bsh1236I CGCG 1 cut(s) 153
BspACI CCGC 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 130
BspFNI CGCG 1 cut(s) 153
BspHI TCATGA 1 cut(s) 106
BsrI ACTGG 1 cut(s) 128
BstBAI YACGTR 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 138
BstFNI CGCG 1 cut(s) 153
BstHHI GCGC 1 cut(s) 153
BstMWI GCNNNNNNNGC 3 cut(s) 68, 77, 97
BstNSI RCATGY 1 cut(s) 11
BstSNI TACGTA 1 cut(s) 51
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 5 cut(s) 46, 58, 61, 64, 109
CciI TCATGA 1 cut(s) 106
CfoI GCGC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 48
CviAII CATG 3 cut(s) 8, 37, 107
CviJI RGCY 4 cut(s) 59, 71, 91, 127
CviKI_1 RGCY 4 cut(s) 59, 71, 91, 127
CviQI GTAC 1 cut(s) 48
DdeI CTNAG 1 cut(s) 138
Eco105I TACGTA 1 cut(s) 51
FaeI CATG 3 cut(s) 11, 40, 110
FaiI YATR 5 cut(s) 9, 38, 83, 108, 172
FatI CATG 3 cut(s) 7, 36, 106
Fnu4HI GCNGC 5 cut(s) 60, 72, 75, 78, 98
Fsp4HI GCNGC 5 cut(s) 60, 72, 75, 78, 98
FspBI CTAG 1 cut(s) 63
GlaI GCGC 1 cut(s) 152
GluI GCNGC 5 cut(s) 60, 72, 75, 78, 98
HhaI GCGC 1 cut(s) 153
Hin1II CATG 3 cut(s) 11, 40, 110
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 2 cut(s) 107, 116
HpyAV CCTTC 1 cut(s) 113
HpyCH4IV ACGT 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 77, 97
HpyF3I CTNAG 1 cut(s) 138
HpySE526I ACGT 1 cut(s) 50
Hsp92II CATG 3 cut(s) 11, 40, 110
HspAI GCGC 1 cut(s) 151
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 3 cut(s) 41, 101, 141
Lsp1109I GCAGC 5 cut(s) 46, 58, 61, 64, 109
MaeI CTAG 1 cut(s) 63
MaeII ACGT 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 130
MboII GAAGA 1 cut(s) 150
MluCI AATT 1 cut(s) 20
MnlI CCTC 1 cut(s) 103
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 3 cut(s) 68, 77, 97
NlaIII CATG 3 cut(s) 11, 40, 110
NspI RCATGY 1 cut(s) 11
PagI TCATGA 1 cut(s) 106
PkrI GCNGC 5 cut(s) 61, 73, 76, 79, 99
Ppu21I YACGTR 1 cut(s) 51
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
SatI GCNGC 5 cut(s) 60, 72, 75, 78, 98
SetI ASST 4 cut(s) 53, 73, 93, 114
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
SnaBI TACGTA 1 cut(s) 51
Sse9I AATT 1 cut(s) 20
SsiI CCGC 1 cut(s) 153
SspMI CTAG 1 cut(s) 63
TaiI ACGT 1 cut(s) 53
TasI AATT 1 cut(s) 20
TseI GCWGC 5 cut(s) 59, 71, 74, 77, 97
TspDTI ATGAA 1 cut(s) 17
XceI RCATGY 1 cut(s) 11
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.