RLG00000021601

Aspartate-semialdehyde

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003893
Physical Location & Seq
Reverse (-)
76680825 .. 76682980
2156 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021601

Sequence Viewer

Length: 573 bp
ATGAGTATTTTGGAGGTGAAACGCATGGTGGTCAGTACGTATCAGGCTGCTAGTGGAGCTGCTGCTGCTATGATAGAGCTTGAGCAGCAAACTCATGAGGTTCGGGAAGGGAAGCCAGTGACTTCTGAGATATTTCAGCGGCAGTATGCTTTAAATTTGTTTTCCCACAATTCAGTGGTTTTTCCAAATGGATACAAAGAAGAGGAAATGAAACTAGCTAGTCAAGAAGACACGATAAACATGGGATGTCAAGGAACTGTCACTTGCATGCGAGTTCCTGTAATGCGGGCACATGCTGAGAGTGTACCTCGTGAATTTGAGAATCTCCTTGATGAGGACACCGCAAGGGATATTCGGAAGAAGGCTCCTGGTGTGGTGGTTATTGATGACCATGCAGCTAATAACTTCCCTACACCTTTGGAGCTGTCAAACAAAGATGATGTTGCAATTGGCAGAATCAGCCGTGATATGTCCCAGGAGGGGAACTATGGGTTGGACATCTTTGTCTGCGGTGATCAAAAACGCAAGGGAGCTGCACTTAATGCTGTTCAGATTGCTGAGCTGTCGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230
Pfam Domains
Protein Families
Semialdhyde_dh Semialdhyde_dhC

Protein Analysis

191

Amino Acids

21.02

Weight (kDa)

5.05

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Semialdhyde_dhC PF02774 4 - 175 3.3e-28 Semialdehyde dehydrogenase, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 503
AciI CCGC 4 cut(s) 139, 286, 342, 510
AcsI RAATTY 2 cut(s) 154, 314
AfaI GTAC 2 cut(s) 37, 306
AfiI CCNNNNNNNGG 2 cut(s) 334, 480
AjnI CCWGG 2 cut(s) 367, 474
AjuI GAANNNNNNNTTGG 2 cut(s) 476, 508
AluBI AGCT 7 cut(s) 59, 79, 218, 398, 424, 533, 562
AluI AGCT 7 cut(s) 59, 79, 218, 398, 424, 533, 562
ApeKI GCWGC 7 cut(s) 47, 59, 62, 65, 85, 395, 533
ApoI RAATTY 2 cut(s) 154, 314
AsuHPI GGTGA 2 cut(s) 28, 524
BaeGI GKGCMC 1 cut(s) 292
BauI CACGAG 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 234
BbvI GCAGC 7 cut(s) 34, 46, 49, 52, 97, 407, 520
BceAI ACGGC 1 cut(s) 447
BciT130I CCWGG 2 cut(s) 369, 476
BciVI GTATCC 1 cut(s) 185
BclI TGATCA 1 cut(s) 514
BfaI CTAG 3 cut(s) 51, 215, 219
BfmI CTRYAG 1 cut(s) 569
BfuI GTATCC 1 cut(s) 185
BisI GCNGC 8 cut(s) 48, 60, 63, 66, 86, 140, 396, 534
BlpI GCTNAGC 1 cut(s) 558
BlsI GCNGC 8 cut(s) 49, 61, 64, 67, 87, 141, 397, 535
Bme1390I CCNGG 2 cut(s) 369, 476
BmiI GGNNCC 1 cut(s) 366
BmrFI CCNGG 2 cut(s) 369, 476
BpiI GAAGAC 1 cut(s) 234
BplI GAGNNNNNCTC 2 cut(s) 292, 324
Bpu1102I GCTNAGC 1 cut(s) 558
BpuEI CTTGAG 1 cut(s) 101
BsaAI YACGTR 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 474
Bsc4I CCNNNNNNNGG 2 cut(s) 334, 480
Bse1I ACTGG 1 cut(s) 116
BseBI CCWGG 2 cut(s) 369, 476
BseDI CCNNGG 1 cut(s) 474
BseGI GGATG 1 cut(s) 251
BseLI CCNNNNNNNGG 2 cut(s) 334, 480
BseMII CTCAG 3 cut(s) 117, 288, 549
BseNI ACTGG 1 cut(s) 116
BseSI GKGCMC 1 cut(s) 292
BseXI GCAGC 7 cut(s) 34, 46, 49, 52, 97, 407, 520
BsgI GTGCAG 1 cut(s) 519
BslFI GGGAC 1 cut(s) 457
BslI CCNNNNNNNGG 2 cut(s) 334, 480
BsmFI GGGAC 1 cut(s) 457
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 1 cut(s) 514
Bsp1720I GCTNAGC 1 cut(s) 558
BspACI CCGC 4 cut(s) 139, 286, 342, 510
BspCNI CTCAG 3 cut(s) 118, 289, 550
BspHI TCATGA 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 366
BsrI ACTGG 1 cut(s) 116
BssECI CCNNGG 1 cut(s) 474
BssMI GATC 1 cut(s) 514
BssSI CACGAG 1 cut(s) 309
Bst2BI CACGAG 1 cut(s) 309
Bst2UI CCWGG 2 cut(s) 369, 476
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 195
BstAPI GCANNNNNTGC 1 cut(s) 542
BstBAI YACGTR 1 cut(s) 39
BstC8I GCNNGC 2 cut(s) 269, 288
BstDEI CTNAG 3 cut(s) 126, 297, 558
BstENI CCTNNNNNAGG 1 cut(s) 332
BstF5I GGATG 1 cut(s) 251
BstKTI GATC 1 cut(s) 517
BstMBI GATC 1 cut(s) 514
BstMWI GCNNNNNNNGC 5 cut(s) 56, 65, 85, 459, 542
BstNI CCWGG 2 cut(s) 369, 476
BstNSI RCATGY 2 cut(s) 271, 296
BstSCI CCNGG 2 cut(s) 367, 474
BstSFI CTRYAG 1 cut(s) 569
BstSLI GKGCMC 1 cut(s) 292
BstSNI TACGTA 1 cut(s) 39
BstV1I GCAGC 7 cut(s) 34, 46, 49, 52, 97, 407, 520
BstV2I GAAGAC 1 cut(s) 234
BsuI GTATCC 1 cut(s) 185
BtsCI GGATG 1 cut(s) 251
BtsIMutI CAGTG 2 cut(s) 123, 180
Cac8I GCNNGC 2 cut(s) 269, 288
CciI TCATGA 1 cut(s) 94
Csp6I GTAC 2 cut(s) 36, 305
CviAII CATG 6 cut(s) 25, 95, 241, 268, 293, 392
CviQI GTAC 2 cut(s) 36, 305
DdeI CTNAG 3 cut(s) 126, 297, 558
DpnI GATC 1 cut(s) 516
DpnII GATC 1 cut(s) 514
DraI TTTAAA 1 cut(s) 153
DrdI GACNNNNNNGTC 1 cut(s) 503
DseDI GACNNNNNNGTC 1 cut(s) 503
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco105I TACGTA 1 cut(s) 39
EcoNI CCTNNNNNAGG 1 cut(s) 332
EcoRII CCWGG 2 cut(s) 367, 474
FaeI CATG 6 cut(s) 28, 98, 244, 271, 296, 395
FaqI GGGAC 1 cut(s) 457
FatI CATG 6 cut(s) 24, 94, 240, 267, 292, 391
FauI CCCGC 1 cut(s) 279
FbaI TGATCA 1 cut(s) 514
Fnu4HI GCNGC 8 cut(s) 48, 60, 63, 66, 86, 140, 396, 534
FokI GGATG 1 cut(s) 258
Fsp4HI GCNGC 8 cut(s) 48, 60, 63, 66, 86, 140, 396, 534
FspBI CTAG 3 cut(s) 51, 215, 219
GluI GCNGC 8 cut(s) 48, 60, 63, 66, 86, 140, 396, 534
Hin1II CATG 6 cut(s) 28, 98, 244, 271, 296, 395
HinfI GANTC 2 cut(s) 322, 456
HphI GGTGA 2 cut(s) 28, 524
Hpy166II GTNNAC 1 cut(s) 305
Hpy188I TCNGA 3 cut(s) 127, 357, 552
Hpy188III TCNNGA 4 cut(s) 95, 104, 224, 311
Hpy8I GTNNAC 1 cut(s) 305
HpyAV CCTTC 2 cut(s) 101, 355
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 4 cut(s) 267, 395, 446, 536
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 65, 85, 459, 542
HpyF3I CTNAG 3 cut(s) 126, 297, 558
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 6 cut(s) 28, 98, 244, 271, 296, 395
Ksp22I TGATCA 1 cut(s) 514
Kzo9I GATC 1 cut(s) 514
LmnI GCTCC 4 cut(s) 56, 370, 421, 530
LpnPI CCDG 7 cut(s) 29, 129, 291, 354, 381, 461, 488
Lsp1109I GCAGC 7 cut(s) 34, 46, 49, 52, 97, 407, 520
MaeI CTAG 3 cut(s) 51, 215, 219
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 2 cut(s) 118, 259
MalI GATC 1 cut(s) 516
MboI GATC 1 cut(s) 514
MboII GAAGA 3 cut(s) 212, 239, 370
MfeI CAATTG 1 cut(s) 447
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 4 cut(s) 154, 169, 314, 447
MmeI TCCRAC 1 cut(s) 474
MnlI CCTC 6 cut(s) 7, 91, 196, 318, 328, 472
MseI TTAA 2 cut(s) 152, 540
MslI CAYNNNNRTG 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 139
MspR9I CCNGG 2 cut(s) 369, 476
MunI CAATTG 1 cut(s) 447
MvaI CCWGG 2 cut(s) 369, 476
MwoI GCNNNNNNNGC 5 cut(s) 56, 65, 85, 459, 542
NdeII GATC 1 cut(s) 514
NlaIII CATG 6 cut(s) 28, 98, 244, 271, 296, 395
NlaIV GGNNCC 1 cut(s) 366
NmuCI GTSAC 2 cut(s) 118, 259
NspI RCATGY 2 cut(s) 271, 296
PaeI GCATGC 1 cut(s) 271
PagI TCATGA 1 cut(s) 94
PfeI GAWTC 2 cut(s) 322, 456
PkrI GCNGC 8 cut(s) 49, 61, 64, 67, 87, 141, 397, 535
Ppu21I YACGTR 1 cut(s) 39
Psp6I CCWGG 2 cut(s) 367, 474
PspGI CCWGG 2 cut(s) 367, 474
PspN4I GGNNCC 1 cut(s) 366
RsaI GTAC 2 cut(s) 37, 306
RsaNI GTAC 2 cut(s) 36, 305
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 2 cut(s) 152, 540
SatI GCNGC 8 cut(s) 48, 60, 63, 66, 86, 140, 396, 534
Sau3AI GATC 1 cut(s) 514
ScrFI CCNGG 2 cut(s) 369, 476
SduI GDGCHC 1 cut(s) 292
SfcI CTRYAG 1 cut(s) 569
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
SnaBI TACGTA 1 cut(s) 39
SphI GCATGC 1 cut(s) 271
Sse9I AATT 4 cut(s) 154, 169, 314, 447
SsiI CCGC 4 cut(s) 139, 286, 342, 510
SspMI CTAG 3 cut(s) 51, 215, 219
StyD4I CCNGG 2 cut(s) 367, 474
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 1 cut(s) 41
TasI AATT 4 cut(s) 154, 169, 314, 447
TauI GCSGC 1 cut(s) 142
TfiI GAWTC 2 cut(s) 322, 456
Tru1I TTAA 2 cut(s) 152, 540
Tru9I TTAA 2 cut(s) 152, 540
TscAI CASTG 2 cut(s) 123, 180
TseFI GTSAC 2 cut(s) 118, 259
TseI GCWGC 7 cut(s) 47, 59, 62, 65, 85, 395, 533
Tsp45I GTSAC 2 cut(s) 118, 259
TspDTI ATGAA 1 cut(s) 224
TspRI CASTG 2 cut(s) 123, 180
XagI CCTNNNNNAGG 1 cut(s) 332
XapI RAATTY 2 cut(s) 154, 314
XceI RCATGY 2 cut(s) 271, 296
XspI CTAG 3 cut(s) 51, 215, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.