Rh2DG609600

Aspartate-semialdehyde

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003893
Physical Location & Seq
Reverse (-)
84254949 .. 84255889
941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG609600.1

Sequence Viewer

Length: 228 bp
ATGCCGCCTTGGACGTCAACCATCTCCAAGCGATCTCGGATTATCCTGACCCACGTTACAATTACACCTTCTGGGAATCTGGGTGTTATTGAGGTGAAACGCATGGTGGTCAGTACGTATCAGGCAGCTAGTGGAGCTGCTGCTGCTATGATAGAGCTTGAGCAGCAAACTCATGAGGTTCTGGAAGGGAAGCCAGTAACTTCTGAGATATTTCAGCGTATGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230
Pfam Domains
Protein Families
Semialdhyde_dh Semialdhyde_dhC

Protein Analysis

75

Amino Acids

8.24

Weight (kDa)

8.23

Isoelectric Point (pI)

55.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Semialdhyde_dhC PF02774 30 - 73 4e-06 Semialdehyde dehydrogenase, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 17
AciI CCGC 1 cut(s) 5
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 1 cut(s) 115
AluBI AGCT 3 cut(s) 128, 137, 157
AluI AGCT 3 cut(s) 128, 137, 157
ApeKI GCWGC 5 cut(s) 125, 137, 140, 143, 163
AsuHPI GGTGA 1 cut(s) 106
BbvI GCAGC 5 cut(s) 124, 127, 130, 137, 175
BccI CCATC 1 cut(s) 29
BfaI CTAG 1 cut(s) 129
BisI GCNGC 6 cut(s) 5, 126, 138, 141, 144, 164
BlsI GCNGC 6 cut(s) 6, 127, 139, 142, 145, 165
BpuEI CTTGAG 1 cut(s) 179
BsaAI YACGTR 1 cut(s) 117
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 8
Bse1I ACTGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 8
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 194
BseXI GCAGC 5 cut(s) 124, 127, 130, 137, 175
Bsp143I GATC 1 cut(s) 32
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 196
BspHI TCATGA 1 cut(s) 172
BsrI ACTGG 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 1 cut(s) 32
BssNI GRCGYC 1 cut(s) 14
BssT1I CCWWGG 1 cut(s) 8
BstACI GRCGYC 1 cut(s) 14
BstBAI YACGTR 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 204
BstKTI GATC 1 cut(s) 35
BstMBI GATC 1 cut(s) 32
BstMWI GCNNNNNNNGC 3 cut(s) 134, 143, 163
BstSNI TACGTA 1 cut(s) 117
BstV1I GCAGC 5 cut(s) 124, 127, 130, 137, 175
CciI TCATGA 1 cut(s) 172
Csp6I GTAC 1 cut(s) 114
CviAII CATG 2 cut(s) 103, 173
CviJI RGCY 4 cut(s) 128, 137, 157, 193
CviKI_1 RGCY 4 cut(s) 128, 137, 157, 193
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 1 cut(s) 204
DpnI GATC 1 cut(s) 34
DpnII GATC 1 cut(s) 32
Eco105I TACGTA 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 8
FaeI CATG 2 cut(s) 106, 176
FaiI YATR 4 cut(s) 104, 149, 174, 221
FatI CATG 2 cut(s) 102, 172
Fnu4HI GCNGC 6 cut(s) 5, 126, 138, 141, 144, 164
Fsp4HI GCNGC 6 cut(s) 5, 126, 138, 141, 144, 164
FspBI CTAG 1 cut(s) 129
GluI GCNGC 6 cut(s) 5, 126, 138, 141, 144, 164
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 2 cut(s) 106, 176
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HinfI GANTC 1 cut(s) 76
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 2 cut(s) 39, 205
Hpy188III TCNNGA 3 cut(s) 46, 173, 182
Hpy8I GTNNAC 1 cut(s) 18
HpyAV CCTTC 2 cut(s) 78, 179
HpyCH4IV ACGT 3 cut(s) 14, 54, 116
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 143, 163
HpyF3I CTNAG 1 cut(s) 204
HpySE526I ACGT 3 cut(s) 14, 54, 116
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 2 cut(s) 106, 176
Kzo9I GATC 1 cut(s) 32
LmnI GCTCC 1 cut(s) 134
LpnPI CCDG 6 cut(s) 57, 59, 65, 107, 167, 207
Lsp1109I GCAGC 5 cut(s) 124, 127, 130, 137, 175
MaeI CTAG 1 cut(s) 129
MaeII ACGT 3 cut(s) 14, 54, 116
MaeIII GTNAC 2 cut(s) 55, 196
MalI GATC 1 cut(s) 34
MboI GATC 1 cut(s) 32
MluCI AATT 1 cut(s) 60
MnlI CCTC 2 cut(s) 85, 169
MseI TTAA 1 cut(s) 226
MwoI GCNNNNNNNGC 3 cut(s) 134, 143, 163
NdeII GATC 1 cut(s) 32
NlaIII CATG 2 cut(s) 106, 176
PagI TCATGA 1 cut(s) 172
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 6 cut(s) 6, 127, 139, 142, 145, 165
Ppu21I YACGTR 1 cut(s) 117
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SaqAI TTAA 1 cut(s) 226
SatI GCNGC 6 cut(s) 5, 126, 138, 141, 144, 164
Sau3AI GATC 1 cut(s) 32
SetI ASST 9 cut(s) 17, 57, 70, 96, 119, 130, 139, 159, 180
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
SnaBI TACGTA 1 cut(s) 117
Sse9I AATT 1 cut(s) 60
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 8
TaiI ACGT 3 cut(s) 17, 57, 119
TasI AATT 1 cut(s) 60
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 1 cut(s) 226
Tru9I TTAA 1 cut(s) 226
TseI GCWGC 5 cut(s) 125, 137, 140, 143, 163
XspI CTAG 1 cut(s) 129
ZraI GACGTC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.