Rmu_sc0000595.1_g000031

Aspartate-semialdehyde

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000595.1
OG0003893
Physical Location & Seq
Reverse (-)
141091 .. 142721
1631 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000595.1_g000031.1.cds

Sequence Viewer

Length: 315 bp
atgagagagcttgagcagcaaactcatgaggttctagaagggaagccagtaacttgtgagatatttcagtggcagaatgacaaagatgtcaaggtaactgccacatgcatacaagttcctataacgctagcacatgctgacagtgtaaatcttgaatttgagaatccccttgatgaggcaaatgaccctgttgatctagctttctgtgattacttggggaactgtataaaggccacgtgtgatggtcggctagtactccagaaagctgttgttatttcagtttcactatgcagcgaaggctttccccaaagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230
Pfam Domains
Protein Families
Semialdhyde_dh Semialdhyde_dhC

Protein Analysis

104

Amino Acids

11.59

Weight (kDa)

4.43

Isoelectric Point (pI)

23.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 86
AcsI RAATTY 1 cut(s) 155
AcvI CACGTG 1 cut(s) 237
AfaI GTAC 1 cut(s) 255
AfiI CCNNNNNNNGG 1 cut(s) 175
AflIII ACRYGT 1 cut(s) 236
AgsI TTSAA 1 cut(s) 155
AluBI AGCT 3 cut(s) 10, 200, 266
AluI AGCT 3 cut(s) 10, 200, 266
AoxI GGCC 1 cut(s) 231
ApeKI GCWGC 2 cut(s) 16, 291
ApoI RAATTY 1 cut(s) 155
Asp700I GAANNNNTTC 1 cut(s) 300
AsuNHI GCTAGC 1 cut(s) 127
BbrPI CACGTG 1 cut(s) 237
BbvI GCAGC 2 cut(s) 28, 303
BccI CCATC 1 cut(s) 236
BfaI CTAG 4 cut(s) 35, 128, 197, 251
BisI GCNGC 2 cut(s) 17, 292
BlsI GCNGC 2 cut(s) 18, 293
BmcAI AGTACT 1 cut(s) 255
BmtI GCTAGC 1 cut(s) 131
BpmI CTGGAG 1 cut(s) 242
BpuEI CTTGAG 1 cut(s) 32
BsaAI YACGTR 1 cut(s) 237
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse1I ACTGG 1 cut(s) 47
BseLI CCNNNNNNNGG 1 cut(s) 175
BseNI ACTGG 1 cut(s) 47
BseXI GCAGC 2 cut(s) 28, 303
BshFI GGCC 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 175
BsnI GGCC 1 cut(s) 233
Bsp143I GATC 1 cut(s) 193
BspANI GGCC 1 cut(s) 233
BspHI TCATGA 1 cut(s) 25
BspOI GCTAGC 1 cut(s) 131
BsrI ACTGG 1 cut(s) 47
BssMI GATC 1 cut(s) 193
Bst4CI ACNGT 2 cut(s) 143, 224
BstBAI YACGTR 1 cut(s) 237
BstC8I GCNNGC 1 cut(s) 129
BstENI CCTNNNNNAGG 1 cut(s) 173
BstKTI GATC 1 cut(s) 196
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 2 cut(s) 16, 297
BstNSI RCATGY 2 cut(s) 108, 137
BstV1I GCAGC 2 cut(s) 28, 303
BsuRI GGCC 1 cut(s) 233
BtsIMutI CAGTG 2 cut(s) 74, 148
Cac8I GCNNGC 1 cut(s) 129
CciI TCATGA 1 cut(s) 25
Csp6I GTAC 1 cut(s) 254
CviAII CATG 3 cut(s) 26, 105, 134
CviJI RGCY 7 cut(s) 10, 46, 200, 233, 250, 266, 300
CviKI_1 RGCY 7 cut(s) 10, 46, 200, 233, 250, 266, 300
CviQI GTAC 1 cut(s) 254
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
DrdI GACNNNNNNGTC 1 cut(s) 86
DseDI GACNNNNNNGTC 1 cut(s) 86
Eco72I CACGTG 1 cut(s) 237
EcoNI CCTNNNNNAGG 1 cut(s) 173
EcoT22I ATGCAT 1 cut(s) 110
FaeI CATG 3 cut(s) 29, 108, 137
FaiI YATR 7 cut(s) 27, 106, 110, 122, 135, 227, 289
FatI CATG 3 cut(s) 25, 104, 133
Fnu4HI GCNGC 2 cut(s) 17, 292
Fsp4HI GCNGC 2 cut(s) 17, 292
FspBI CTAG 4 cut(s) 35, 128, 197, 251
GluI GCNGC 2 cut(s) 17, 292
GsuI CTGGAG 1 cut(s) 242
HaeIII GGCC 1 cut(s) 233
Hin1II CATG 3 cut(s) 29, 108, 137
HinfI GANTC 1 cut(s) 163
Hpy188III TCNNGA 4 cut(s) 26, 35, 152, 259
HpyAV CCTTC 2 cut(s) 32, 290
HpyCH4III ACNGT 2 cut(s) 143, 224
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 2 cut(s) 108, 291
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 297
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 3 cut(s) 29, 108, 137
Kzo9I GATC 1 cut(s) 193
LpnPI CCDG 3 cut(s) 60, 201, 272
Lsp1109I GCAGC 2 cut(s) 28, 303
MaeI CTAG 4 cut(s) 35, 128, 197, 251
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 2 cut(s) 49, 94
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MluCI AATT 1 cut(s) 155
MnlI CCTC 2 cut(s) 22, 169
Mph1103I ATGCAT 1 cut(s) 110
MroXI GAANNNNTTC 1 cut(s) 300
MwoI GCNNNNNNNGC 2 cut(s) 16, 297
NdeII GATC 1 cut(s) 193
NheI GCTAGC 1 cut(s) 127
NlaIII CATG 3 cut(s) 29, 108, 137
NsiI ATGCAT 1 cut(s) 110
NspI RCATGY 2 cut(s) 108, 137
PagI TCATGA 1 cut(s) 25
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 1 cut(s) 163
PkrI GCNGC 2 cut(s) 18, 293
PmaCI CACGTG 1 cut(s) 237
PmlI CACGTG 1 cut(s) 237
Ppu21I YACGTR 1 cut(s) 237
PspCI CACGTG 1 cut(s) 237
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
SatI GCNGC 2 cut(s) 17, 292
Sau3AI GATC 1 cut(s) 193
ScaI AGTACT 1 cut(s) 255
SetI ASST 6 cut(s) 12, 33, 96, 202, 239, 268
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 1 cut(s) 155
SspMI CTAG 4 cut(s) 35, 128, 197, 251
TaaI ACNGT 2 cut(s) 143, 224
TaiI ACGT 1 cut(s) 239
TasI AATT 1 cut(s) 155
TatI WGTACW 1 cut(s) 253
TfiI GAWTC 1 cut(s) 163
TscAI CASTG 2 cut(s) 74, 148
TseI GCWGC 2 cut(s) 16, 291
TspRI CASTG 2 cut(s) 74, 148
XagI CCTNNNNNAGG 1 cut(s) 173
XapI RAATTY 1 cut(s) 155
XbaI TCTAGA 1 cut(s) 34
XceI RCATGY 2 cut(s) 108, 137
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 4 cut(s) 35, 128, 197, 251
ZrmI AGTACT 1 cut(s) 255
Zsp2I ATGCAT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.