Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025004.1

Orthogroup ID

OG0003893

Physical Location & Seq

Genomic Coordinates Forward (+)

89 .. 787

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025004.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atggtctatacaacgagaggcaatcctctcgcattccatgaacccaaccttgatgaacttgagattcgatccaagtccctcgtatggcacaccaaggatgtttaccaacttgtagttggcactttctgcagtaaagttataaatattttaacaagtacggacaccgcaaggtatattcggaagaaggctcctggtgtggcggttattgatgtccatgcagctaataacttccctacacctttggaggtgtcaaacaaagatgatgttgcagttggcagaatcagccatgatgtgtcccaggaggggaactatggctacaaatgggaatatctgagcaggttggacatctttgtctgcggtgatcaaaaacgcaagggagctgcacttaatgctgttcagattgctgagctgttgctatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

Semialdhyde_dh Semialdhyde_dhC

Protein Analysis

139

Amino Acids

15.55

Weight (kDa)

6.9

Isoelectric Point (pI)

22.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14810 AT1G14810
fragaria_vesca	FvH4_4g33450
malus_domestica	MD13G1019500.v1.1 MD13G1041100.v1.1 MD16G1017700.v1.1
prunus_persica	Prupe.1G334400_v2.0.a1
pyrus_communis	pycom13g01660 pycom13g03540 pycom16g01600
rosa_chinensis	RchiOBHm_Chr2g0166251 RchiOBHm_Chr4g0442761
rosa_laevigata	RLG00000005986 RLG00000021601
rosa_multiflora	Rmu_sc0000595.1_g000031 Rmu_sc0007974.1_g000012 Rmu_sc0025004.1_g000001 Rmu_ssc0000204.1_g000022
rosa_roxburghii	Rroxscaffold_2G00085050
rosa_rugosa	Rorug02G0521600 Rorug04G0342800
rosa_samantha	Rh2AG587600 Rh2AG587700 Rh2BG599500 Rh2BG599600 Rh2CG570000 Rh2CG570500 Rh2DG609600 Rh4BG408100 Rh4CG423900 Rh5CG565000
rosa_wichuraiana	Rw0G003920 Rw2G048980 Rw4G034170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
AasI	GACNNNNNNGTC	1 cut(s)	350
Acc36I	ACCTGC	1 cut(s)	327
AciI	CCGC	3 cut(s)	165, 200, 357
AclWI	GGATC	1 cut(s)	63
AfaI	GTAC	1 cut(s)	157
AfiI	CCNNNNNNNGG	2 cut(s)	84, 303
AjnI	CCWGG	2 cut(s)	190, 297
AluBI	AGCT	3 cut(s)	221, 380, 409
AluI	AGCT	3 cut(s)	221, 380, 409
AlwI	GGATC	1 cut(s)	63
ApeKI	GCWGC	2 cut(s)	218, 380
AsuHPI	GGTGA	1 cut(s)	371
BbvI	GCAGC	2 cut(s)	230, 367
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BciT130I	CCWGG	2 cut(s)	192, 299
BclI	TGATCA	1 cut(s)	361
BfmI	CTRYAG	2 cut(s)	127, 416
BfuAI	ACCTGC	1 cut(s)	327
BisI	GCNGC	2 cut(s)	219, 381
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	2 cut(s)	220, 382
Bme1390I	CCNGG	2 cut(s)	192, 299
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	2 cut(s)	192, 299
Bpu1102I	GCTNAGC	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	93, 297
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 303
BseBI	CCWGG	2 cut(s)	192, 299
BseDI	CCNNGG	2 cut(s)	93, 297
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	2 cut(s)	84, 303
BseMII	CTCAG	2 cut(s)	323, 396
BseXI	GCAGC	2 cut(s)	230, 367
BsgI	GTGCAG	1 cut(s)	366
BslFI	GGGAC	2 cut(s)	61, 280
BslI	CCNNNNNNNGG	2 cut(s)	84, 303
BsmFI	GGGAC	2 cut(s)	61, 280
BsmI	GAATGC	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	68, 361
Bsp1720I	GCTNAGC	1 cut(s)	405
BspACI	CCGC	3 cut(s)	165, 200, 357
BspCNI	CTCAG	2 cut(s)	324, 397
BspLI	GGNNCC	1 cut(s)	189
BspMAI	CTGCAG	1 cut(s)	131
BspMI	ACCTGC	1 cut(s)	327
BspPI	GGATC	1 cut(s)	63
BssECI	CCNNGG	2 cut(s)	93, 297
BssMI	GATC	2 cut(s)	68, 361
BssT1I	CCWWGG	1 cut(s)	93
Bst2UI	CCWGG	2 cut(s)	192, 299
BstAPI	GCANNNNNTGC	2 cut(s)	126, 389
BstDEI	CTNAG	2 cut(s)	332, 405
BstF5I	GGATG	1 cut(s)	103
BstKTI	GATC	2 cut(s)	71, 364
BstMBI	GATC	2 cut(s)	68, 361
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 282, 389
BstNI	CCWGG	2 cut(s)	192, 299
BstSCI	CCNGG	2 cut(s)	190, 297
BstSFI	CTRYAG	2 cut(s)	127, 416
BstV1I	GCAGC	2 cut(s)	230, 367
BtsCI	GGATG	1 cut(s)	103
BveI	ACCTGC	1 cut(s)	327
Csp6I	GTAC	1 cut(s)	156
CviAII	CATG	3 cut(s)	38, 215, 287
CviJI	RGCY	6 cut(s)	188, 221, 285, 315, 380, 409
CviKI_1	RGCY	6 cut(s)	188, 221, 285, 315, 380, 409
CviQI	GTAC	1 cut(s)	156
DdeI	CTNAG	2 cut(s)	332, 405
DpnI	GATC	2 cut(s)	70, 363
DpnII	GATC	2 cut(s)	68, 361
DrdI	GACNNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	93
EcoRII	CCWGG	2 cut(s)	190, 297
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	3 cut(s)	41, 218, 290
FaiI	YATR	9 cut(s)	9, 39, 85, 140, 174, 216, 288, 312, 418
FaqI	GGGAC	2 cut(s)	61, 280
FatI	CATG	3 cut(s)	37, 214, 286
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	2 cut(s)	219, 381
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	2 cut(s)	219, 381
GluI	GCNGC	2 cut(s)	219, 381
Hin1II	CATG	3 cut(s)	41, 218, 290
HinfI	GANTC	2 cut(s)	64, 279
HphI	GGTGA	1 cut(s)	371
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	3 cut(s)	180, 333, 399
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	1 cut(s)	178
HpyCH4V	TGCA	4 cut(s)	129, 218, 269, 383
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 282, 389
HpyF3I	CTNAG	2 cut(s)	332, 405
Hsp92II	CATG	3 cut(s)	41, 218, 290
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	2 cut(s)	68, 361
LmnI	GCTCC	2 cut(s)	193, 377
LpnPI	CCDG	5 cut(s)	177, 204, 284, 311, 322
Lsp1109I	GCAGC	2 cut(s)	230, 367
MalI	GATC	2 cut(s)	70, 363
MboI	GATC	2 cut(s)	68, 361
MboII	GAAGA	1 cut(s)	193
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	5 cut(s)	11, 36, 89, 238, 295
MseI	TTAA	2 cut(s)	149, 387
MspR9I	CCNGG	2 cut(s)	192, 299
Mva1269I	GAATGC	1 cut(s)	32
MvaI	CCWGG	2 cut(s)	192, 299
MwoI	GCNNNNNNNGC	3 cut(s)	126, 282, 389
NdeII	GATC	2 cut(s)	68, 361
NlaIII	CATG	3 cut(s)	41, 218, 290
NlaIV	GGNNCC	1 cut(s)	189
PctI	GAATGC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	64, 279
PkrI	GCNGC	2 cut(s)	220, 382
PsiI	TTATAA	1 cut(s)	140
Psp6I	CCWGG	2 cut(s)	190, 297
PspGI	CCWGG	2 cut(s)	190, 297
PspN4I	GGNNCC	1 cut(s)	189
PsrI	GAACNNNNNNTAC	2 cut(s)	299, 331
PstI	CTGCAG	1 cut(s)	131
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	149, 387
SatI	GCNGC	2 cut(s)	219, 381
Sau3AI	GATC	2 cut(s)	68, 361
ScrFI	CCNGG	2 cut(s)	192, 299
SetI	ASST	8 cut(s)	51, 173, 223, 241, 249, 341, 382, 411
SfcI	CTRYAG	2 cut(s)	127, 416
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
SsiI	CCGC	3 cut(s)	165, 200, 357
SspI	AATATT	1 cut(s)	145
StyD4I	CCNGG	2 cut(s)	190, 297
StyI	CCWWGG	1 cut(s)	93
TaqI	TCGA	1 cut(s)	67
TfiI	GAWTC	2 cut(s)	64, 279
Tru1I	TTAA	2 cut(s)	149, 387
Tru9I	TTAA	2 cut(s)	149, 387
TseI	GCWGC	2 cut(s)	218, 380
TspDTI	ATGAA	2 cut(s)	54, 69
TspGWI	ACGGA	1 cut(s)	173
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.