Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003893

Physical Location & Seq

Genomic Coordinates Forward (+)

7459373 .. 7460806

Gene Structure 1434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00085050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCCGCCTTGGACGTCAACCATCTCCAAGCGATCTCGGATTTTCCTGACCCGCGTTACAATTACACCTTCTGGGAATCTGGGTGTTATTGAGGTGAAACTCATGGTGGTCAGTACGTATCAGGCTGCTAGTGGAGCTGCTGCTGCTGCTGCTATGATAGAGCTTGAGCAGCAAACTCATAGGGTTCTGGAAGGGAAGCCACTAACTTCTGAGATATTTCAGCGGCAGGCACATGCTGAGTGTGTAAATCGTGAATTTGAGAATCTCCTTGATGAGGTAATACTACAATACTGTTATATAACCTACGTCGATGATAAAAATATATATTGGTTGTTGATGTGTTGTTTTGGTAAAGTCATTAAGGAATTTCACATTGTAAATCTCCACCATTGGTGGGAAGAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230

Pfam Domains

Protein Families

Semialdhyde_dh Semialdhyde_dhC

Protein Analysis

135

Amino Acids

15.6

Weight (kDa)

6.19

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14810 AT1G14810
fragaria_vesca	FvH4_4g33450
malus_domestica	MD13G1019500.v1.1 MD13G1041100.v1.1 MD16G1017700.v1.1
prunus_persica	Prupe.1G334400_v2.0.a1
pyrus_communis	pycom13g01660 pycom13g03540 pycom16g01600
rosa_chinensis	RchiOBHm_Chr2g0166251 RchiOBHm_Chr4g0442761
rosa_laevigata	RLG00000005986 RLG00000021601
rosa_multiflora	Rmu_sc0000595.1_g000031 Rmu_sc0007974.1_g000012 Rmu_sc0025004.1_g000001 Rmu_ssc0000204.1_g000022
rosa_roxburghii	Rroxscaffold_2G00085050
rosa_rugosa	Rorug02G0521600 Rorug04G0342800
rosa_samantha	Rh2AG587600 Rh2AG587700 Rh2BG599500 Rh2BG599600 Rh2CG570000 Rh2CG570500 Rh2DG609600 Rh4BG408100 Rh4CG423900 Rh5CG565000
rosa_wichuraiana	Rw0G003920 Rw2G048980 Rw4G034170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	17
AccII	CGCG	1 cut(s)	54
AciI	CCGC	3 cut(s)	5, 52, 223
AcsI	RAATTY	2 cut(s)	254, 365
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	2 cut(s)	274, 394
AluBI	AGCT	2 cut(s)	137, 163
AluI	AGCT	2 cut(s)	137, 163
ApeKI	GCWGC	7 cut(s)	125, 137, 140, 143, 146, 149, 169
ApoI	RAATTY	2 cut(s)	254, 365
AsuHPI	GGTGA	1 cut(s)	106
BbvI	GCAGC	7 cut(s)	112, 124, 127, 130, 133, 136, 181
BccI	CCATC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	129
BisI	GCNGC	9 cut(s)	5, 126, 138, 141, 144, 147, 150, 170, 224
BlsI	GCNGC	9 cut(s)	6, 127, 139, 142, 145, 148, 151, 171, 225
BpuEI	CTTGAG	1 cut(s)	185
BsaAI	YACGTR	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 394
BseDI	CCNNGG	1 cut(s)	8
BseLI	CCNNNNNNNGG	2 cut(s)	274, 394
BseMII	CTCAG	2 cut(s)	201, 228
BseXI	GCAGC	7 cut(s)	112, 124, 127, 130, 133, 136, 181
Bsh1236I	CGCG	1 cut(s)	54
BslI	CCNNNNNNNGG	2 cut(s)	274, 394
Bsp143I	GATC	1 cut(s)	32
BspACI	CCGC	3 cut(s)	5, 52, 223
BspCNI	CTCAG	2 cut(s)	202, 229
BspFNI	CGCG	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	1 cut(s)	32
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	293
BstACI	GRCGYC	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	2 cut(s)	210, 237
BstENI	CCTNNNNNAGG	1 cut(s)	272
BstFNI	CGCG	1 cut(s)	54
BstKTI	GATC	1 cut(s)	35
BstMBI	GATC	1 cut(s)	32
BstMWI	GCNNNNNNNGC	5 cut(s)	134, 143, 146, 149, 169
BstNSI	RCATGY	1 cut(s)	236
BstSNI	TACGTA	1 cut(s)	117
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	7 cut(s)	112, 124, 127, 130, 133, 136, 181
Cac8I	GCNNGC	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	2 cut(s)	103, 233
CviJI	RGCY	4 cut(s)	125, 137, 163, 199
CviKI_1	RGCY	4 cut(s)	125, 137, 163, 199
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	2 cut(s)	210, 237
DpnI	GATC	1 cut(s)	34
DpnII	GATC	1 cut(s)	32
Eco105I	TACGTA	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	8
EcoNI	CCTNNNNNAGG	1 cut(s)	272
EcoT14I	CCWWGG	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	8
FaeI	CATG	2 cut(s)	106, 236
FaiI	YATR	8 cut(s)	104, 155, 180, 234, 297, 299, 323, 325
FatI	CATG	2 cut(s)	102, 232
FauI	CCCGC	1 cut(s)	59
Fnu4HI	GCNGC	9 cut(s)	5, 126, 138, 141, 144, 147, 150, 170, 224
Fsp4HI	GCNGC	9 cut(s)	5, 126, 138, 141, 144, 147, 150, 170, 224
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	9 cut(s)	5, 126, 138, 141, 144, 147, 150, 170, 224
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	2 cut(s)	106, 236
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	2 cut(s)	76, 262
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	2 cut(s)	39, 211
Hpy188III	TCNNGA	3 cut(s)	46, 188, 251
Hpy8I	GTNNAC	1 cut(s)	18
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	2 cut(s)	78, 185
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	3 cut(s)	14, 116, 306
HpyF10VI	GCNNNNNNNGC	5 cut(s)	134, 143, 146, 149, 169
HpyF3I	CTNAG	2 cut(s)	210, 237
HpySE526I	ACGT	3 cut(s)	14, 116, 306
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	106, 236
Kzo9I	GATC	1 cut(s)	32
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	6 cut(s)	57, 59, 65, 107, 173, 212
Lsp1109I	GCAGC	7 cut(s)	112, 124, 127, 130, 133, 136, 181
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	3 cut(s)	14, 116, 306
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	34
MboI	GATC	1 cut(s)	32
MluCI	AATT	3 cut(s)	60, 254, 365
MnlI	CCTC	2 cut(s)	85, 268
MseI	TTAA	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	223
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	5 cut(s)	134, 143, 146, 149, 169
NdeII	GATC	1 cut(s)	32
NlaIII	CATG	2 cut(s)	106, 236
NspI	RCATGY	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	76, 262
PkrI	GCNGC	9 cut(s)	6, 127, 139, 142, 145, 148, 151, 171, 225
Ppu21I	YACGTR	1 cut(s)	117
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	9 cut(s)	5, 126, 138, 141, 144, 147, 150, 170, 224
Sau3AI	GATC	1 cut(s)	32
SetI	ASST	9 cut(s)	17, 70, 96, 119, 139, 165, 279, 305, 309
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SnaBI	TACGTA	1 cut(s)	117
Sse9I	AATT	3 cut(s)	60, 254, 365
SsiI	CCGC	3 cut(s)	5, 52, 223
SspMI	CTAG	1 cut(s)	129
StyI	CCWWGG	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	3 cut(s)	17, 119, 309
TaqI	TCGA	1 cut(s)	309
TasI	AATT	3 cut(s)	60, 254, 365
TauI	GCSGC	2 cut(s)	7, 226
TfiI	GAWTC	2 cut(s)	76, 262
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TseI	GCWGC	7 cut(s)	125, 137, 140, 143, 146, 149, 169
XagI	CCTNNNNNAGG	1 cut(s)	272
XapI	RAATTY	2 cut(s)	254, 365
XceI	RCATGY	1 cut(s)	236
XspI	CTAG	1 cut(s)	129
ZraI	GACGTC	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.