Rh2AG587700

Aspartate-semialdehyde

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0003893
Physical Location & Seq
Reverse (-)
81941242 .. 81942198
957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG587700.1

Sequence Viewer

Length: 366 bp
ATGAAATGTGTGCTGTTGTATTGTACCCAAGACAAAGTAACTAACGTCAAACTGATCCCTCACTTCCTTATGCCGCCTTGGACGTCAACCATCTCCAAGCGATCTCGGATTATCCTGACCCGCGTTACAATTACACCTTCTGGGAATCTGGGTGTTATTGAGGTGAAAAGCATGGTGGTCAGTACGTATCAGGCTGCTAGTGGAGCTGCTGCTGCTATGATAGAGCTTGAGCAGCAAACTCATGAGGTTCTGGAAGGGAAGCCAGTAACTTCTGAGATATTTCAGCGGCTGATCTGTCTACCTTTGCTCTTTGTTGTTCAAGTTTGTTTTCGGAAAAATAGTTGTGTTCTGTTCTGTTTCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00261 ko00270 ko00300 ko01100 ko01110 ko01120 ko01130 ko01210 ko01230 map00260 map00261 map00270 map00300 map01100 map01110 map01120 map01130 map01210 map01230
Pfam Domains
Protein Families
Semialdhyde_dh Semialdhyde_dhC

Protein Analysis

121

Amino Acids

13.52

Weight (kDa)

9.04

Isoelectric Point (pI)

39.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 86
AccI GTMKAC 1 cut(s) 298
AccII CGCG 1 cut(s) 123
AciI CCGC 3 cut(s) 74, 121, 286
AclWI GGATC 1 cut(s) 49
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 2 cut(s) 25, 184
AgsI TTSAA 1 cut(s) 320
AluBI AGCT 2 cut(s) 206, 226
AluI AGCT 2 cut(s) 206, 226
AlwI GGATC 1 cut(s) 49
AlwNI CAGNNNCTG 1 cut(s) 289
ApeKI GCWGC 5 cut(s) 194, 206, 209, 212, 232
AsuHPI GGTGA 1 cut(s) 175
BbvI GCAGC 5 cut(s) 181, 193, 196, 199, 244
BccI CCATC 1 cut(s) 98
BfaI CTAG 1 cut(s) 198
BisI GCNGC 7 cut(s) 74, 195, 207, 210, 213, 233, 287
BlsI GCNGC 7 cut(s) 75, 196, 208, 211, 214, 234, 288
BpuEI CTTGAG 1 cut(s) 248
BsaAI YACGTR 1 cut(s) 186
BsaHI GRCGYC 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 263
BseDI CCNNGG 1 cut(s) 77
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 263
BseXI GCAGC 5 cut(s) 181, 193, 196, 199, 244
Bsh1236I CGCG 1 cut(s) 123
Bsp143I GATC 3 cut(s) 54, 101, 291
BspACI CCGC 3 cut(s) 74, 121, 286
BspCNI CTCAG 1 cut(s) 265
BspFNI CGCG 1 cut(s) 123
BspHI TCATGA 1 cut(s) 241
BspPI GGATC 1 cut(s) 49
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 77
BssMI GATC 3 cut(s) 54, 101, 291
BssNI GRCGYC 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 77
BstACI GRCGYC 1 cut(s) 83
BstBAI YACGTR 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 273
BstFNI CGCG 1 cut(s) 123
BstKTI GATC 3 cut(s) 57, 104, 294
BstMBI GATC 3 cut(s) 54, 101, 291
BstMWI GCNNNNNNNGC 3 cut(s) 203, 212, 232
BstSNI TACGTA 1 cut(s) 186
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 5 cut(s) 181, 193, 196, 199, 244
CaiI CAGNNNCTG 1 cut(s) 289
CciI TCATGA 1 cut(s) 241
Csp6I GTAC 2 cut(s) 24, 183
CviAII CATG 3 cut(s) 172, 242, 363
CviJI RGCY 5 cut(s) 194, 206, 226, 262, 289
CviKI_1 RGCY 5 cut(s) 194, 206, 226, 262, 289
CviQI GTAC 2 cut(s) 24, 183
DdeI CTNAG 1 cut(s) 273
DpnI GATC 3 cut(s) 56, 103, 293
DpnII GATC 3 cut(s) 54, 101, 291
Eco105I TACGTA 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 77
FaeI CATG 3 cut(s) 175, 245, 366
FaiI YATR 5 cut(s) 71, 173, 218, 243, 364
FatI CATG 3 cut(s) 171, 241, 362
FauI CCCGC 1 cut(s) 128
FblI GTMKAC 1 cut(s) 298
Fnu4HI GCNGC 7 cut(s) 74, 195, 207, 210, 213, 233, 287
Fsp4HI GCNGC 7 cut(s) 74, 195, 207, 210, 213, 233, 287
FspBI CTAG 1 cut(s) 198
GluI GCNGC 7 cut(s) 74, 195, 207, 210, 213, 233, 287
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 3 cut(s) 175, 245, 366
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HinfI GANTC 1 cut(s) 145
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 2 cut(s) 87, 299
Hpy188I TCNGA 3 cut(s) 108, 274, 333
Hpy188III TCNNGA 3 cut(s) 115, 242, 251
Hpy8I GTNNAC 2 cut(s) 87, 299
HpyAV CCTTC 2 cut(s) 147, 248
HpyCH4IV ACGT 3 cut(s) 45, 83, 185
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 212, 232
HpyF3I CTNAG 1 cut(s) 273
HpySE526I ACGT 3 cut(s) 45, 83, 185
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 3 cut(s) 175, 245, 366
Kzo9I GATC 3 cut(s) 54, 101, 291
LmnI GCTCC 1 cut(s) 203
LpnPI CCDG 6 cut(s) 126, 128, 134, 176, 236, 276
Lsp1109I GCAGC 5 cut(s) 181, 193, 196, 199, 244
MaeI CTAG 1 cut(s) 198
MaeII ACGT 3 cut(s) 45, 83, 185
MaeIII GTNAC 3 cut(s) 37, 124, 265
MalI GATC 3 cut(s) 56, 103, 293
MboI GATC 3 cut(s) 54, 101, 291
MluCI AATT 1 cut(s) 129
MnlI CCTC 3 cut(s) 69, 154, 238
MspA1I CMGCKG 1 cut(s) 286
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 3 cut(s) 203, 212, 232
NdeII GATC 3 cut(s) 54, 101, 291
NlaIII CATG 3 cut(s) 175, 245, 366
PagI TCATGA 1 cut(s) 241
PfeI GAWTC 1 cut(s) 145
PkrI GCNGC 7 cut(s) 75, 196, 208, 211, 214, 234, 288
Ppu21I YACGTR 1 cut(s) 186
PstNI CAGNNNCTG 1 cut(s) 289
RsaI GTAC 2 cut(s) 25, 184
RsaNI GTAC 2 cut(s) 24, 183
SatI GCNGC 7 cut(s) 74, 195, 207, 210, 213, 233, 287
Sau3AI GATC 3 cut(s) 54, 101, 291
SetI ASST 9 cut(s) 48, 86, 139, 165, 188, 208, 228, 249, 304
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
SnaBI TACGTA 1 cut(s) 186
Sse9I AATT 1 cut(s) 129
SsiI CCGC 3 cut(s) 74, 121, 286
SspMI CTAG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 77
TaiI ACGT 3 cut(s) 48, 86, 188
TasI AATT 1 cut(s) 129
TauI GCSGC 2 cut(s) 76, 289
TfiI GAWTC 1 cut(s) 145
TseI GCWGC 5 cut(s) 194, 206, 209, 212, 232
TspDTI ATGAA 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 298
XspI CTAG 1 cut(s) 198
ZraI GACGTC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.